Wall clock time and date at job start Tue Mar 9 2021 13:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86302 * 109.46966 * 2 1 4 4 C 1.50699 * 109.46957 * 119.99227 * 2 1 3 5 5 C 1.34851 * 125.89537 * 244.97477 * 4 2 1 6 6 C 1.40890 * 107.41811 * 180.02562 * 5 4 2 7 7 C 1.34850 * 107.41611 * 0.02562 * 6 5 4 8 8 C 1.50711 * 125.88642 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.46839 * 85.02609 * 8 7 6 10 10 O 1.21283 * 120.00052 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99922 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46845 * 325.00694 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 18 18 C 1.50701 * 109.46958 * 180.02562 * 16 15 14 19 19 N 1.30522 * 126.34675 * 145.02858 * 18 16 15 20 20 N 1.28594 * 109.67407 * 179.97438 * 19 18 16 21 21 C 1.30523 * 109.67479 * 359.97438 * 20 19 18 22 22 N 1.35491 * 126.34604 * 324.71593 * 18 16 15 23 23 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 24 24 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 25 25 N 1.36336 * 108.22126 * 0.26255 * 7 6 5 26 26 H 0.96696 * 114.00021 * 299.99886 * 1 2 3 27 27 H 1.08995 * 109.47401 * 239.99761 * 2 1 3 28 28 H 1.48496 * 109.99985 * 178.68146 * 3 2 1 29 29 H 1.48502 * 109.99711 * 299.99854 * 3 2 1 30 30 H 1.07998 * 126.29105 * 0.02562 * 5 4 2 31 31 H 1.08000 * 126.29232 * 179.97438 * 6 5 4 32 32 H 1.08991 * 109.47128 * 325.02632 * 8 7 6 33 33 H 1.09000 * 109.46620 * 205.02312 * 8 7 6 34 34 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 36 36 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 37 37 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 39 39 H 1.07990 * 126.34833 * 180.02562 * 21 20 19 40 40 H 0.97003 * 126.98437 * 0.03516 * 22 18 16 41 41 H 1.09004 * 109.47368 * 179.97438 * 23 16 15 42 42 H 1.09001 * 109.47372 * 59.99964 * 23 16 15 43 43 H 1.09002 * 109.47153 * 59.99757 * 24 12 11 44 44 H 1.09001 * 109.46832 * 299.99948 * 24 12 11 45 45 H 0.97001 * 125.63545 * 179.74389 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7102 1.2306 5 6 2.6306 -0.1486 2.2376 6 6 2.8984 -1.1604 3.1807 7 6 2.3531 -2.3019 2.7138 8 6 2.3945 -3.6447 3.3970 9 6 1.2629 -3.7393 4.3877 10 8 0.4984 -2.8079 4.5259 11 7 1.1004 -4.8588 5.1202 12 6 0.0000 -4.9510 6.0830 13 1 -0.1726 -3.9730 6.5322 14 6 -1.2692 -5.4130 5.3641 15 6 -2.4186 -5.5087 6.3695 16 6 -2.0568 -6.5155 7.4633 17 1 -1.8845 -7.4935 7.0143 18 6 -3.1892 -6.6102 8.4532 19 7 -3.5730 -7.6835 9.0891 20 7 -4.5676 -7.4012 9.8538 21 6 -4.8631 -6.1349 9.7411 22 7 -3.9936 -5.5957 8.8525 23 6 -0.7877 -6.0534 8.1821 24 6 0.3620 -5.9580 7.1765 25 7 1.7636 -2.0333 1.5142 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 -0.8899 28 1 3.5346 1.7704 0.0321 29 1 1.5615 2.4678 -1.2085 30 1 2.9302 0.8866 2.3082 31 1 3.4414 -1.0434 4.1070 32 1 3.3447 -3.7577 3.9188 33 1 2.2926 -4.4343 2.6525 34 1 1.7120 -5.6036 5.0100 35 1 -1.0967 -6.3910 4.9148 36 1 -1.5272 -4.6956 4.5851 37 1 -3.3227 -5.8383 5.8574 38 1 -2.5910 -4.5306 6.8185 39 1 -5.6517 -5.6128 10.2622 40 1 -3.9561 -4.6715 8.5603 41 1 -0.5302 -6.7704 8.9618 42 1 -0.9601 -5.0753 8.6312 43 1 1.2662 -5.6288 7.6886 44 1 0.5345 -6.9359 6.7271 45 1 1.2988 -2.6764 0.9563 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:17 Heat of formation + Delta-G solvation = 39.629520 kcal Electronic energy + Delta-G solvation = -27813.455636 eV Core-core repulsion = 23833.750508 eV Total energy + Delta-G solvation = -3979.705129 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.15589 -42.31749 -40.92140 -39.22163 -37.69401 -35.66676 -34.57686 -33.30135 -32.19993 -31.90635 -31.87130 -29.98635 -28.85092 -25.42428 -24.52581 -24.00170 -23.29612 -22.25283 -21.64191 -21.34736 -21.14823 -20.74282 -19.31204 -18.93875 -18.05195 -17.52860 -16.86324 -16.80524 -16.40046 -16.34167 -16.25606 -15.82706 -15.32433 -15.12747 -15.08979 -14.78230 -14.63065 -14.32006 -14.13984 -13.98418 -13.86195 -13.71761 -13.45650 -13.27813 -12.83999 -12.71015 -12.39904 -12.26771 -12.20113 -12.10190 -11.99243 -11.84639 -11.65551 -11.51038 -11.29759 -10.88155 -10.63508 -10.25936 -10.02516 -9.78562 -8.94913 -4.93972 0.84898 1.12523 1.28881 1.67570 1.68523 1.83861 1.87926 1.91055 1.92052 2.32611 2.52874 3.16818 3.50926 3.53609 3.66289 3.71771 3.81859 3.87785 3.95545 4.06228 4.15052 4.21515 4.23191 4.33739 4.34401 4.37298 4.39979 4.43382 4.50681 4.51027 4.63529 4.68866 4.80219 4.81352 4.99997 5.02130 5.04321 5.08223 5.16449 5.26209 5.27432 5.30342 5.32963 5.56098 6.01446 6.14898 6.22403 6.57843 6.65404 6.69041 7.31933 7.69581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.054 4.054 3 Si 0.801 3.199 4 C -0.023 4.023 5 C -0.201 4.201 6 C -0.201 4.201 7 C 0.034 3.966 8 C -0.069 4.069 9 C 0.512 3.488 10 O -0.572 6.572 11 N -0.716 5.716 12 C 0.147 3.853 13 H 0.070 0.930 14 C -0.120 4.120 15 C -0.107 4.107 16 C 0.004 3.996 17 H 0.108 0.892 18 C 0.191 3.809 19 N -0.343 5.343 20 N -0.354 5.354 21 C 0.169 3.831 22 N -0.570 5.570 23 C -0.102 4.102 24 C -0.115 4.115 25 N -0.538 5.538 26 H 0.395 0.605 27 H 0.106 0.894 28 H -0.285 1.285 29 H -0.294 1.294 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.261 0.739 40 H 0.445 0.555 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 1.718 0.133 3.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.163 4.163 3 Si 0.706 3.294 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.110 4.110 9 C 0.299 3.701 10 O -0.450 6.450 11 N -0.368 5.368 12 C 0.042 3.958 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.017 4.017 17 H 0.126 0.874 18 C -0.080 4.080 19 N -0.182 5.182 20 N -0.193 5.193 21 C -0.122 4.122 22 N -0.184 5.184 23 C -0.142 4.142 24 C -0.153 4.153 25 N -0.133 5.133 26 H 0.245 0.755 27 H 0.123 0.877 28 H -0.212 1.212 29 H -0.222 1.222 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.277 0.723 40 H 0.288 0.712 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.778 0.937 -0.291 2.946 hybrid contribution -0.147 0.491 -0.872 1.011 sum 2.632 1.428 -1.163 3.212 Atomic orbital electron populations 1.86433 1.17621 1.82269 1.50513 1.24956 0.84879 1.11383 0.95124 0.92943 0.77733 0.74421 0.84340 1.20977 1.07535 0.84797 1.00284 1.20921 1.05726 1.00274 0.95675 1.20847 1.07733 0.92437 1.01508 1.19939 1.02572 0.97014 0.88492 1.20262 0.99541 0.93514 0.97643 1.20910 0.85772 0.81914 0.81474 1.90745 1.47097 1.39163 1.68013 1.45950 1.32176 1.17977 1.40706 1.20936 0.86104 0.99713 0.89007 0.91223 1.21805 0.94133 1.02198 0.97764 1.21531 0.98837 0.98628 0.95639 1.19819 0.88481 1.02417 0.91018 0.87392 1.25224 0.97438 0.84542 1.00772 1.74185 1.09803 1.24924 1.09322 1.74190 1.11118 1.14260 1.19712 1.27295 0.98091 0.91868 0.94906 1.44102 1.25978 1.13897 1.34406 1.21489 0.92661 1.02052 0.97960 1.21737 0.98399 0.99881 0.95315 1.41903 1.44222 1.09124 1.18077 0.75516 0.87650 1.21194 1.22175 0.82974 0.84126 0.84064 0.85669 0.74548 0.90191 0.92810 0.91094 0.90950 0.72312 0.71174 0.91012 0.91311 0.89811 0.89227 0.74494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.10 12.88 -148.98 -1.92 -3.02 16 2 C -0.05 -0.05 3.08 71.24 0.22 0.17 16 3 Si 0.80 -0.76 30.60 68.60 2.10 1.34 16 4 C -0.02 -0.06 6.50 41.08 0.27 0.20 16 5 C -0.20 -0.68 9.37 22.14 0.21 -0.47 16 6 C -0.20 -0.75 10.76 22.14 0.24 -0.51 16 7 C 0.03 0.04 5.66 41.08 0.23 0.27 16 8 C -0.07 0.44 6.24 29.11 0.18 0.62 16 9 C 0.51 -0.82 7.79 87.66 0.68 -0.14 16 10 O -0.57 -4.79 15.70 -3.04 -0.05 -4.84 16 11 N -0.72 5.39 5.08 -442.53 -2.25 3.14 16 12 C 0.15 -0.89 2.45 44.99 0.11 -0.78 16 13 H 0.07 -0.09 7.58 -2.39 -0.02 -0.10 16 14 C -0.12 0.66 5.49 30.60 0.17 0.83 16 15 C -0.11 0.68 4.98 30.59 0.15 0.83 16 16 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 17 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 18 C 0.19 0.29 6.99 137.98 0.96 1.25 16 19 N -0.34 -3.64 12.21 -50.15 -0.61 -4.25 16 20 N -0.35 -3.63 12.21 -59.99 -0.73 -4.36 16 21 C 0.17 -0.10 13.19 180.11 2.38 2.28 16 22 N -0.57 2.19 5.96 -189.86 -1.13 1.06 16 23 C -0.10 0.65 5.19 30.61 0.16 0.81 16 24 C -0.12 1.06 5.39 30.61 0.17 1.23 16 25 N -0.54 -0.83 6.07 -171.11 -1.04 -1.87 16 26 H 0.39 -1.75 8.70 -74.06 -0.64 -2.40 16 27 H 0.11 0.11 7.96 -2.39 -0.02 0.10 16 28 H -0.29 -1.17 7.11 99.48 0.71 -0.46 16 29 H -0.29 -1.59 7.11 99.48 0.71 -0.88 16 30 H 0.15 -0.05 6.24 -2.91 -0.02 -0.07 16 31 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.14 -1.58 8.14 -2.39 -0.02 -1.60 16 33 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 34 H 0.42 -5.75 8.60 -92.70 -0.80 -6.55 16 35 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.07 -0.37 8.14 -2.39 -0.02 -0.38 16 38 H 0.07 -0.55 7.52 -2.39 -0.02 -0.57 16 39 H 0.26 -2.72 8.06 -2.92 -0.02 -2.74 16 40 H 0.45 -4.90 8.29 -92.71 -0.77 -5.67 16 41 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 45 H 0.42 -0.72 8.96 -92.71 -0.83 -1.55 16 Total: 0.00 -32.62 372.06 -1.48 -34.11 By element: Atomic # 1 Polarization: -25.91 SS G_CDS: -1.94 Total: -27.86 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.09 Total: 6.55 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -5.76 Total: -6.28 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -1.97 Total: -7.86 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.10 Total: 1.34 kcal Total: -32.62 -1.48 -34.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.735 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds