Wall clock time and date at job start Tue Mar 9 2021 13:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99589 * 2 1 4 4 O 1.20820 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99606 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47209 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.84789 * 316.19730 * 6 5 3 8 8 C 1.53962 * 113.74183 * 87.39821 * 6 5 3 9 9 C 1.53786 * 87.01719 * 139.94755 * 8 6 5 10 10 H 1.09002 * 113.61357 * 220.04719 * 9 8 6 11 11 N 1.46497 * 113.61643 * 89.22773 * 9 8 6 12 12 C 1.34780 * 119.99653 * 105.85894 * 11 9 8 13 13 O 1.21270 * 120.00163 * 0.02562 * 12 11 9 14 14 C 1.50711 * 119.99583 * 179.97438 * 12 11 9 15 15 O 1.42904 * 109.46830 * 180.02562 * 14 12 11 16 16 C 1.35899 * 116.99762 * 180.02562 * 15 14 12 17 17 C 1.38733 * 120.05549 * 359.72588 * 16 15 14 18 18 C 1.38148 * 119.93809 * 179.74526 * 17 16 15 19 19 C 1.38260 * 120.05821 * 0.50884 * 18 17 16 20 20 C 1.50697 * 119.94286 * 179.74523 * 19 18 17 21 21 O 1.42901 * 109.47357 * 120.02501 * 20 19 18 22 22 Si 1.86295 * 109.47225 * 0.02562 * 20 19 18 23 23 C 1.38262 * 120.11065 * 359.76803 * 19 18 17 24 24 C 1.38145 * 120.06056 * 359.97438 * 23 19 18 25 25 C 1.53781 * 87.17350 * 334.63802 * 9 8 6 26 26 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47308 * 299.99964 * 1 2 3 28 28 H 1.09005 * 109.46895 * 60.00356 * 1 2 3 29 29 H 1.09004 * 109.47521 * 59.99861 * 5 3 2 30 30 H 1.09000 * 109.47260 * 299.99495 * 5 3 2 31 31 H 1.08993 * 113.61598 * 25.42737 * 8 6 5 32 32 H 1.09000 * 113.66569 * 254.47092 * 8 6 5 33 33 H 0.96995 * 120.00146 * 285.86755 * 11 9 8 34 34 H 1.08992 * 109.47059 * 300.00404 * 14 12 11 35 35 H 1.08997 * 109.46986 * 60.00582 * 14 12 11 36 36 H 1.08000 * 120.02821 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.96844 * 180.22903 * 18 17 16 38 38 H 1.09004 * 109.46917 * 240.02028 * 20 19 18 39 39 H 0.96703 * 113.99237 * 300.00135 * 21 20 19 40 40 H 1.48503 * 110.00068 * 58.68190 * 22 20 19 41 41 H 1.48502 * 110.00318 * 179.97438 * 22 20 19 42 42 H 1.08007 * 119.96865 * 179.97438 * 23 19 18 43 43 H 1.07999 * 120.02992 * 179.97438 * 24 23 19 44 44 H 1.09001 * 113.61695 * 139.93969 * 25 9 8 45 45 H 1.08996 * 113.61580 * 270.76247 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4246 3.3534 -0.6963 8 6 4.1150 3.3551 1.4066 9 6 5.3813 4.0690 0.9048 10 1 6.1875 4.0948 1.6379 11 7 5.1174 5.3783 0.3031 12 6 5.4315 6.5041 0.9744 13 8 5.9330 6.4331 2.0762 14 6 5.1605 7.8511 0.3551 15 8 5.5778 8.8810 1.2536 16 6 5.4016 10.1650 0.8448 17 6 4.8438 10.4282 -0.3979 18 6 4.6609 11.7344 -0.8088 19 6 5.0428 12.7788 0.0128 20 6 4.8474 14.2026 -0.4405 21 8 3.9892 14.8816 0.4786 22 14 4.0750 14.2142 -2.1357 23 6 5.6042 12.5190 1.2493 24 6 5.7844 11.2147 1.6672 25 6 5.5208 2.9349 -0.1244 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.9557 0.7810 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 4.3086 2.6205 2.1882 32 1 3.3002 4.0349 1.6556 33 1 4.7165 5.4351 -0.5783 34 1 5.7137 7.9389 -0.5799 35 1 4.0935 7.9518 0.1569 36 1 4.5495 9.6127 -1.0419 37 1 4.2233 11.9399 -1.7746 38 1 5.8125 14.7079 -0.4774 39 1 3.1109 14.4857 0.5624 40 1 2.7730 13.5005 -2.1056 41 1 3.8764 15.6128 -2.5939 42 1 5.9021 13.3366 1.8891 43 1 6.2233 11.0123 2.6330 44 1 5.8391 3.2760 -1.1095 45 1 6.1006 2.0858 0.2373 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16627170_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:42 Heat of formation + Delta-G solvation = -130.266622 kcal Electronic energy + Delta-G solvation = -27679.603486 eV Core-core repulsion = 23437.489554 eV Total energy + Delta-G solvation = -4242.113932 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85330 -41.47228 -40.89522 -39.65403 -38.79472 -37.44409 -37.19185 -34.78416 -32.46966 -31.86961 -31.66134 -29.60609 -28.41599 -26.88128 -26.26542 -24.83268 -23.95254 -22.52474 -21.91416 -21.86344 -20.37387 -19.52293 -18.65452 -18.44702 -18.22237 -17.70604 -17.53999 -17.48292 -17.09222 -16.84248 -16.37839 -16.15403 -15.80889 -15.66051 -15.55865 -15.15817 -14.94781 -14.76361 -14.65345 -14.31105 -14.16438 -13.83418 -13.72445 -13.50101 -13.48930 -13.40685 -13.05096 -12.85161 -12.28785 -12.23521 -12.16077 -12.10651 -11.82496 -11.76875 -11.63224 -11.42447 -11.38597 -10.93241 -10.58758 -10.19669 -10.04441 -9.22751 -4.97794 0.28274 0.29606 1.18908 1.28824 1.38897 1.44505 1.58105 1.69061 1.96071 2.50655 2.65079 3.26533 3.29844 3.38051 3.42172 3.58949 3.65207 3.68672 3.72711 3.80183 3.85827 3.87330 3.88937 4.12794 4.18827 4.22165 4.26072 4.27061 4.36533 4.43445 4.53473 4.53616 4.56924 4.59524 4.64887 4.69498 4.90662 4.94769 4.96009 5.02929 5.14544 5.24588 5.38282 5.44615 5.49644 5.67609 6.20441 6.34727 6.41735 6.71947 7.05893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.506 6.506 5 C -0.106 4.106 6 C -0.103 4.103 7 H 0.102 0.898 8 C -0.147 4.147 9 C 0.122 3.878 10 H 0.107 0.893 11 N -0.710 5.710 12 C 0.519 3.481 13 O -0.510 6.510 14 C 0.040 3.960 15 O -0.288 6.288 16 C 0.134 3.866 17 C -0.206 4.206 18 C -0.075 4.075 19 C -0.156 4.156 20 C -0.070 4.070 21 O -0.530 6.530 22 Si 0.682 3.318 23 C -0.051 4.051 24 C -0.145 4.145 25 C -0.138 4.138 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.403 0.597 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.376 0.624 40 H -0.261 1.261 41 H -0.257 1.257 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.079 0.921 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -5.148 -5.815 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.393 6.393 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.120 0.880 8 C -0.185 4.185 9 C 0.017 3.983 10 H 0.125 0.875 11 N -0.364 5.364 12 C 0.304 3.696 13 O -0.383 6.383 14 C -0.039 4.039 15 O -0.200 6.200 16 C 0.089 3.911 17 C -0.225 4.225 18 C -0.093 4.093 19 C -0.156 4.156 20 C -0.180 4.180 21 O -0.337 6.337 22 Si 0.583 3.417 23 C -0.069 4.069 24 C -0.164 4.164 25 C -0.176 4.176 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.238 0.762 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.223 0.777 40 H -0.186 1.186 41 H -0.183 1.183 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.098 0.902 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.380 -4.337 -5.232 6.806 hybrid contribution -1.459 -0.085 0.227 1.479 sum -1.079 -4.422 -5.004 6.765 Atomic orbital electron populations 1.23300 0.75941 1.03966 1.02666 1.86513 1.23791 1.33544 1.84032 1.23843 0.92332 0.81372 0.72283 1.90682 1.67276 1.36348 1.44983 1.21450 0.87537 0.99094 1.06221 1.22570 0.96281 0.94042 0.99231 0.87971 1.23559 0.98463 1.00109 0.96413 1.21813 0.98790 0.81157 0.96566 0.87453 1.45468 1.64715 1.04791 1.21415 1.20025 0.78522 0.85124 0.85959 1.90786 1.41276 1.86965 1.19295 1.22469 1.01936 0.85923 0.93552 1.86173 1.78994 1.11853 1.42996 1.19084 0.95317 0.83588 0.93117 1.21173 1.06674 0.98022 0.96645 1.20782 0.97917 0.91895 0.98656 1.20197 1.03660 0.95463 0.96305 1.24957 0.99263 0.90693 1.03076 1.86600 1.27856 1.56168 1.63057 0.95135 0.84473 0.82355 0.79709 1.20861 0.95290 0.95682 0.95070 1.20538 1.04541 0.90426 1.00888 1.23395 0.95652 0.98512 1.00039 0.87892 0.91779 0.91803 0.87200 0.87225 0.88806 0.90529 0.76209 0.88547 0.88679 0.85043 0.85261 0.86426 0.77665 1.18596 1.18256 0.84745 0.84621 0.90204 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.25 10.57 -39.27 -0.41 -0.66 16 3 C 0.46 0.29 7.96 36.00 0.29 0.58 16 4 O -0.51 -1.79 15.51 -18.74 -0.29 -2.08 16 5 C -0.11 0.31 5.65 -27.89 -0.16 0.15 16 6 C -0.10 0.28 3.04 -89.71 -0.27 0.01 16 7 H 0.10 -0.20 7.68 -51.93 -0.40 -0.60 16 8 C -0.15 0.19 7.45 -25.82 -0.19 -0.01 16 9 C 0.12 -0.18 4.29 -67.12 -0.29 -0.47 16 10 H 0.11 0.02 7.50 -51.93 -0.39 -0.37 16 11 N -0.71 1.27 5.27 -53.01 -0.28 1.00 16 12 C 0.52 0.67 7.91 -10.98 -0.09 0.58 16 13 O -0.51 -3.21 16.12 -14.34 -0.23 -3.44 16 14 C 0.04 -0.04 5.22 36.01 0.19 0.15 16 15 O -0.29 -0.81 9.67 -39.33 -0.38 -1.19 16 16 C 0.13 0.23 6.69 -39.22 -0.26 -0.03 16 17 C -0.21 0.07 9.04 -39.43 -0.36 -0.29 16 18 C -0.07 0.04 8.66 -39.61 -0.34 -0.31 16 19 C -0.16 -0.05 5.39 -104.61 -0.56 -0.61 16 20 C -0.07 0.01 2.82 36.00 0.10 0.11 16 21 O -0.53 -0.76 12.77 -35.23 -0.45 -1.21 16 22 Si 0.68 -0.68 29.78 -169.99 -5.06 -5.75 16 23 C -0.05 -0.05 9.60 -39.61 -0.38 -0.43 16 24 C -0.15 -0.26 9.99 -39.43 -0.39 -0.65 16 25 C -0.14 0.55 7.38 -25.92 -0.19 0.36 16 26 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 27 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 28 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 29 H 0.11 -0.51 8.14 -51.93 -0.42 -0.93 16 30 H 0.11 -0.46 7.86 -51.93 -0.41 -0.87 16 31 H 0.09 -0.18 7.91 -51.93 -0.41 -0.59 16 32 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.40 -1.90 8.71 -40.82 -0.36 -2.26 16 34 H 0.10 -0.37 7.65 -51.93 -0.40 -0.76 16 35 H 0.10 -0.31 7.67 -51.93 -0.40 -0.71 16 36 H 0.13 -0.40 6.30 -52.49 -0.33 -0.73 16 37 H 0.13 -0.32 4.87 -52.49 -0.26 -0.58 16 38 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.38 -0.48 8.70 45.56 0.40 -0.09 16 40 H -0.26 -0.24 7.11 56.52 0.40 0.16 16 41 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 42 H 0.13 0.03 8.06 -52.48 -0.42 -0.40 16 43 H 0.14 0.19 8.06 -52.49 -0.42 -0.24 16 44 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 45 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 LS Contribution 381.39 15.07 5.75 5.75 Total: 0.00 -11.32 381.39 -9.57 -20.89 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: -6.36 Total: -13.48 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.85 Total: 0.18 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -0.28 Total: 1.00 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -1.77 Total: -8.58 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.06 Total: -5.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -11.32 -9.57 -20.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.379 kcal (2) G-P(sol) polarization free energy of solvation -11.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds