Wall clock time and date at job start Tue Mar 9 2021 13:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99589 * 2 1 4 4 O 1.20820 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99606 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47209 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.84789 * 316.19730 * 6 5 3 8 8 C 1.53962 * 113.74183 * 87.39821 * 6 5 3 9 9 C 1.53786 * 87.01719 * 139.94755 * 8 6 5 10 10 H 1.09002 * 113.61357 * 220.04719 * 9 8 6 11 11 N 1.46497 * 113.61643 * 89.22773 * 9 8 6 12 12 C 1.34780 * 119.99653 * 105.85894 * 11 9 8 13 13 O 1.21270 * 120.00163 * 0.02562 * 12 11 9 14 14 C 1.50711 * 119.99583 * 179.97438 * 12 11 9 15 15 O 1.42904 * 109.46830 * 180.02562 * 14 12 11 16 16 C 1.35899 * 116.99762 * 180.02562 * 15 14 12 17 17 C 1.38733 * 120.05549 * 359.72588 * 16 15 14 18 18 C 1.38148 * 119.93809 * 179.74526 * 17 16 15 19 19 C 1.38260 * 120.05821 * 0.50884 * 18 17 16 20 20 C 1.50697 * 119.94286 * 179.74523 * 19 18 17 21 21 O 1.42901 * 109.47357 * 120.02501 * 20 19 18 22 22 Si 1.86295 * 109.47225 * 0.02562 * 20 19 18 23 23 C 1.38262 * 120.11065 * 359.76803 * 19 18 17 24 24 C 1.38145 * 120.06056 * 359.97438 * 23 19 18 25 25 C 1.53781 * 87.17350 * 334.63802 * 9 8 6 26 26 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47308 * 299.99964 * 1 2 3 28 28 H 1.09005 * 109.46895 * 60.00356 * 1 2 3 29 29 H 1.09004 * 109.47521 * 59.99861 * 5 3 2 30 30 H 1.09000 * 109.47260 * 299.99495 * 5 3 2 31 31 H 1.08993 * 113.61598 * 25.42737 * 8 6 5 32 32 H 1.09000 * 113.66569 * 254.47092 * 8 6 5 33 33 H 0.96995 * 120.00146 * 285.86755 * 11 9 8 34 34 H 1.08992 * 109.47059 * 300.00404 * 14 12 11 35 35 H 1.08997 * 109.46986 * 60.00582 * 14 12 11 36 36 H 1.08000 * 120.02821 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.96844 * 180.22903 * 18 17 16 38 38 H 1.09004 * 109.46917 * 240.02028 * 20 19 18 39 39 H 0.96703 * 113.99237 * 300.00135 * 21 20 19 40 40 H 1.48503 * 110.00068 * 58.68190 * 22 20 19 41 41 H 1.48502 * 110.00318 * 179.97438 * 22 20 19 42 42 H 1.08007 * 119.96865 * 179.97438 * 23 19 18 43 43 H 1.07999 * 120.02992 * 179.97438 * 24 23 19 44 44 H 1.09001 * 113.61695 * 139.93969 * 25 9 8 45 45 H 1.08996 * 113.61580 * 270.76247 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4246 3.3534 -0.6963 8 6 4.1150 3.3551 1.4066 9 6 5.3813 4.0690 0.9048 10 1 6.1875 4.0948 1.6379 11 7 5.1174 5.3783 0.3031 12 6 5.4315 6.5041 0.9744 13 8 5.9330 6.4331 2.0762 14 6 5.1605 7.8511 0.3551 15 8 5.5778 8.8810 1.2536 16 6 5.4016 10.1650 0.8448 17 6 4.8438 10.4282 -0.3979 18 6 4.6609 11.7344 -0.8088 19 6 5.0428 12.7788 0.0128 20 6 4.8474 14.2026 -0.4405 21 8 3.9892 14.8816 0.4786 22 14 4.0750 14.2142 -2.1357 23 6 5.6042 12.5190 1.2493 24 6 5.7844 11.2147 1.6672 25 6 5.5208 2.9349 -0.1244 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.9557 0.7810 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 4.3086 2.6205 2.1882 32 1 3.3002 4.0349 1.6556 33 1 4.7165 5.4351 -0.5783 34 1 5.7137 7.9389 -0.5799 35 1 4.0935 7.9518 0.1569 36 1 4.5495 9.6127 -1.0419 37 1 4.2233 11.9399 -1.7746 38 1 5.8125 14.7079 -0.4774 39 1 3.1109 14.4857 0.5624 40 1 2.7730 13.5005 -2.1056 41 1 3.8764 15.6128 -2.5939 42 1 5.9021 13.3366 1.8891 43 1 6.2233 11.0123 2.6330 44 1 5.8391 3.2760 -1.1095 45 1 6.1006 2.0858 0.2373 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:42 Heat of formation + Delta-G solvation = -131.678237 kcal Electronic energy + Delta-G solvation = -27679.664698 eV Core-core repulsion = 23437.489554 eV Total energy + Delta-G solvation = -4242.175144 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82789 -41.49184 -40.89334 -39.63148 -38.84521 -37.49687 -37.23725 -34.79883 -32.45826 -31.82113 -31.60425 -29.55103 -28.32222 -26.68880 -26.26299 -24.74491 -23.93275 -22.53091 -21.87735 -21.85036 -20.25041 -19.50780 -18.65659 -18.45379 -18.24193 -17.66607 -17.52770 -17.45817 -17.09830 -16.82221 -16.36117 -16.15766 -15.76738 -15.62109 -15.51211 -15.11736 -14.91739 -14.70202 -14.62544 -14.37893 -14.12482 -13.76483 -13.69196 -13.50870 -13.39103 -13.34810 -12.97416 -12.68586 -12.30683 -12.16049 -12.07687 -12.05574 -11.83324 -11.73177 -11.63953 -11.39315 -11.20866 -11.04822 -10.59831 -10.16640 -10.04746 -9.24798 -4.91220 0.26158 0.29864 1.18648 1.33571 1.39217 1.45449 1.61389 1.79720 1.98328 2.56928 2.63940 3.43065 3.45160 3.47616 3.51256 3.72489 3.77813 3.81559 3.84396 3.92641 3.93366 4.01433 4.07996 4.25557 4.27580 4.29913 4.41472 4.42424 4.51001 4.55482 4.61650 4.68497 4.68751 4.76339 4.82043 4.88106 4.96406 5.04337 5.11071 5.14928 5.20051 5.24544 5.42385 5.48309 5.57345 5.69051 6.24335 6.43539 6.49743 6.71876 7.09268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.542 6.542 5 C -0.102 4.102 6 C -0.095 4.095 7 H 0.096 0.904 8 C -0.152 4.152 9 C 0.111 3.889 10 H 0.086 0.914 11 N -0.694 5.694 12 C 0.514 3.486 13 O -0.572 6.572 14 C 0.037 3.963 15 O -0.320 6.320 16 C 0.120 3.880 17 C -0.201 4.201 18 C -0.075 4.075 19 C -0.158 4.158 20 C -0.082 4.082 21 O -0.551 6.551 22 Si 0.772 3.228 23 C -0.060 4.060 24 C -0.166 4.166 25 C -0.116 4.116 26 H 0.126 0.874 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.385 0.615 40 H -0.280 1.280 41 H -0.307 1.307 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.096 0.904 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -6.450 -8.198 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.139 4.139 6 C -0.114 4.114 7 H 0.114 0.886 8 C -0.191 4.191 9 C 0.005 3.995 10 H 0.104 0.896 11 N -0.347 5.347 12 C 0.301 3.699 13 O -0.450 6.450 14 C -0.041 4.041 15 O -0.233 6.233 16 C 0.075 3.925 17 C -0.219 4.219 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.191 4.191 21 O -0.360 6.360 22 Si 0.678 3.322 23 C -0.078 4.078 24 C -0.185 4.185 25 C -0.154 4.154 26 H 0.144 0.856 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.258 0.742 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.181 0.819 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.235 0.765 40 H -0.206 1.206 41 H -0.236 1.236 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.114 0.886 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.408 -5.688 -7.645 9.538 hybrid contribution -1.528 0.318 0.995 1.851 sum -1.121 -5.370 -6.650 8.621 Atomic orbital electron populations 1.23463 0.75387 1.05406 1.02221 1.86518 1.24549 1.33682 1.83817 1.24599 0.93654 0.80783 0.71001 1.90666 1.68328 1.37395 1.46840 1.21595 0.84934 0.99149 1.08179 1.22482 0.97185 0.94120 0.97602 0.88626 1.23596 0.97598 1.00066 0.97850 1.21900 0.98033 0.81993 0.97549 0.89611 1.45381 1.63461 1.04139 1.21738 1.20565 0.77500 0.86587 0.85287 1.90757 1.44412 1.87861 1.22001 1.22740 1.03975 0.83634 0.93749 1.86128 1.79620 1.12754 1.44806 1.19232 0.96087 0.83152 0.94038 1.21499 1.05330 0.99092 0.95961 1.21065 0.97293 0.91572 0.99334 1.20294 1.03501 0.95972 0.96127 1.25246 0.99670 0.90451 1.03690 1.86569 1.28762 1.56863 1.63765 0.94148 0.82243 0.78716 0.77139 1.20909 0.95816 0.95345 0.95723 1.20624 1.05571 0.91227 1.01075 1.23330 0.94651 0.97509 0.99900 0.85560 0.92452 0.92075 0.84640 0.85552 0.88334 0.93207 0.74209 0.85120 0.86067 0.81856 0.82933 0.85997 0.76549 1.20620 1.23572 0.84814 0.85579 0.88577 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.37 -0.40 10.57 -51.45 -0.54 -0.94 16 3 C 0.45 0.52 7.96 71.24 0.57 1.09 16 4 O -0.54 -4.26 15.51 21.98 0.34 -3.92 16 5 C -0.10 0.74 5.65 29.85 0.17 0.91 16 6 C -0.10 0.61 3.04 -10.21 -0.03 0.58 16 7 H 0.10 -0.44 7.68 -2.39 -0.02 -0.46 16 8 C -0.15 0.27 7.45 31.18 0.23 0.50 16 9 C 0.11 -0.29 4.29 45.52 0.20 -0.10 16 10 H 0.09 0.18 7.50 -2.39 -0.02 0.16 16 11 N -0.69 2.52 5.27 -440.03 -2.32 0.20 16 12 C 0.51 1.76 7.91 87.66 0.69 2.45 16 13 O -0.57 -8.67 16.12 16.04 0.26 -8.41 16 14 C 0.04 -0.10 5.22 71.24 0.37 0.28 16 15 O -0.32 -2.09 9.67 -73.38 -0.71 -2.80 16 16 C 0.12 0.47 6.69 22.51 0.15 0.62 16 17 C -0.20 0.43 9.04 22.37 0.20 0.64 16 18 C -0.08 0.19 8.66 22.25 0.19 0.38 16 19 C -0.16 -0.06 5.39 -19.85 -0.11 -0.17 16 20 C -0.08 0.04 2.82 71.23 0.20 0.24 16 21 O -0.55 -1.79 12.77 -148.98 -1.90 -3.69 16 22 Si 0.77 -2.19 29.78 68.60 2.04 -0.14 16 23 C -0.06 -0.19 9.60 22.25 0.21 0.03 16 24 C -0.17 -0.88 9.99 22.37 0.22 -0.66 16 25 C -0.12 1.12 7.38 31.12 0.23 1.35 16 26 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 28 H 0.06 -0.09 8.13 -2.38 -0.02 -0.11 16 29 H 0.14 -1.63 8.14 -2.38 -0.02 -1.65 16 30 H 0.13 -1.30 7.86 -2.39 -0.02 -1.32 16 31 H 0.10 -0.31 7.91 -2.39 -0.02 -0.33 16 32 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.42 -4.49 8.71 -92.71 -0.81 -5.29 16 34 H 0.13 -1.29 7.65 -2.39 -0.02 -1.31 16 35 H 0.12 -0.99 7.67 -2.39 -0.02 -1.01 16 36 H 0.16 -1.53 6.30 -2.91 -0.02 -1.55 16 37 H 0.15 -1.16 4.87 -2.91 -0.01 -1.17 16 38 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.39 -0.87 8.70 -74.06 -0.64 -1.52 16 40 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 41 H -0.31 -1.70 7.11 99.48 0.71 -1.00 16 42 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 43 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 45 H 0.12 -1.46 8.10 -2.39 -0.02 -1.48 16 Total: 0.00 -30.58 381.39 1.49 -29.09 By element: Atomic # 1 Polarization: -18.28 SS G_CDS: -0.38 Total: -18.66 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.70 Total: 9.27 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -2.32 Total: 0.20 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -2.56 Total: -19.76 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: 2.04 Total: -0.14 kcal Total: -30.58 1.49 -29.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.584 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds