Wall clock time and date at job start Tue Mar 9 2021 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99956 * 2 1 4 4 C 1.39152 * 120.07406 * 179.97438 * 3 2 1 5 5 O 1.35990 * 120.07342 * 0.02562 * 4 3 2 6 6 C 1.42905 * 117.00366 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47280 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00562 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00257 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.47104 * 324.99999 * 10 9 7 12 12 C 1.53001 * 109.47224 * 85.00153 * 10 9 7 13 13 C 1.53006 * 109.47149 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46825 * 299.99807 * 13 12 10 15 15 H 1.08993 * 109.47345 * 300.00089 * 14 13 12 16 16 C 1.47195 * 109.47120 * 179.97438 * 14 13 12 17 17 N 9.14928 * 127.30089 * 6.58872 * 6 1 2 18 18 C 1.53001 * 109.47100 * 60.00163 * 14 13 12 19 19 C 1.52998 * 109.47279 * 205.00231 * 10 9 7 20 20 C 1.38567 * 119.85406 * 179.97438 * 4 3 2 21 21 C 1.38233 * 120.00003 * 0.02562 * 20 4 3 22 22 C 1.38250 * 120.14989 * 0.02562 * 21 20 4 23 23 C 1.50700 * 119.93098 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.46801 * 244.97803 * 23 22 21 25 25 Si 1.86295 * 109.47088 * 4.97471 * 23 22 21 26 26 C 1.38245 * 120.14567 * 359.95995 * 22 21 20 27 27 H 1.09004 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46790 * 299.99120 * 1 2 3 29 29 H 1.08998 * 109.47193 * 59.99618 * 1 2 3 30 30 H 1.08993 * 109.47197 * 300.00462 * 6 5 4 31 31 H 1.09003 * 109.46655 * 59.99892 * 6 5 4 32 32 H 0.96996 * 119.99561 * 0.02562 * 9 7 6 33 33 H 1.09005 * 109.47107 * 299.99582 * 12 10 9 34 34 H 1.08993 * 109.47081 * 60.00101 * 12 10 9 35 35 H 1.08997 * 109.47048 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47135 * 59.99506 * 13 12 10 37 37 H 1.09000 * 109.47045 * 179.97438 * 18 14 13 38 38 H 1.08999 * 109.47505 * 59.99906 * 18 14 13 39 39 H 1.09007 * 109.46863 * 299.99916 * 19 10 9 40 40 H 1.08999 * 109.47126 * 59.99539 * 19 10 9 41 41 H 1.08000 * 119.99832 * 179.97438 * 20 4 3 42 42 H 1.08007 * 119.92682 * 180.02562 * 21 20 4 43 43 H 1.08995 * 109.47556 * 124.97722 * 23 22 21 44 44 H 0.96706 * 114.00056 * 60.00125 * 24 23 22 45 45 H 1.48497 * 110.00119 * 180.02562 * 25 23 22 46 46 H 1.48502 * 110.00261 * 301.32374 * 25 23 22 47 47 H 1.07995 * 120.00146 * 179.74376 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6004 0.3007 0.0005 7 6 6.2519 -1.0581 0.0012 8 8 5.5671 -2.0591 0.0011 9 7 7.5958 -1.1611 0.0008 10 6 8.2292 -2.4821 0.0008 11 1 7.6274 -3.1736 0.5906 12 6 8.3359 -2.9966 -1.4361 13 6 8.9969 -4.3765 -1.4360 14 6 10.3964 -4.2715 -0.8266 15 1 10.9985 -3.5803 -1.4162 16 6 11.0321 -5.5991 -0.8259 17 7 11.5245 -6.6200 -0.8470 18 6 10.2897 -3.7570 0.6103 19 6 9.6287 -2.3766 0.6100 20 6 4.0603 2.5234 0.0000 21 6 3.3029 3.6798 -0.0005 22 6 1.9224 3.6058 0.0000 23 6 1.1016 4.8696 0.0000 24 8 0.3647 4.9589 1.2211 25 14 2.2308 6.3434 -0.1531 26 6 1.2932 2.3748 0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 5.9066 0.8505 -0.8893 31 1 5.9065 0.8505 0.8906 32 1 8.1435 -0.3606 0.0004 33 1 7.3388 -3.0718 -1.8701 34 1 8.9377 -2.3052 -2.0258 35 1 9.0733 -4.7428 -2.4597 36 1 8.3948 -5.0677 -0.8463 37 1 11.2866 -3.6827 1.0446 38 1 9.6875 -4.4482 1.2000 39 1 10.2305 -1.6851 0.0202 40 1 9.5527 -2.0100 1.6337 41 1 5.1386 2.5840 0.0008 42 1 3.7908 4.6434 -0.0014 43 1 0.4093 4.8533 -0.8417 44 1 0.9181 4.9781 2.0140 45 1 1.4336 7.5962 -0.1537 46 1 3.2004 6.3594 0.9716 47 1 0.2146 2.3197 0.0048 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:48 Heat of formation + Delta-G solvation = -88.934810 kcal Electronic energy + Delta-G solvation = -29617.671154 eV Core-core repulsion = 25346.842026 eV Total energy + Delta-G solvation = -4270.829128 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79517 -41.08370 -39.83789 -39.12021 -38.86427 -37.37455 -36.98401 -35.20142 -32.15613 -31.79118 -31.53824 -31.16484 -29.03668 -28.39694 -26.19417 -24.50848 -23.75517 -23.37388 -22.50032 -21.50874 -21.08693 -19.76258 -18.72322 -18.62357 -18.31063 -17.95409 -17.45876 -17.20215 -17.01468 -16.64552 -16.11983 -16.03460 -15.81119 -15.78439 -15.43499 -15.32246 -15.16287 -14.76011 -14.66612 -14.49720 -14.31071 -13.92201 -13.76251 -13.66874 -13.53570 -13.42565 -13.23537 -13.01902 -12.60956 -12.57007 -12.27391 -12.17485 -12.12126 -12.10746 -12.06722 -11.96181 -11.59979 -11.42720 -11.24744 -10.87191 -10.59286 -10.05453 -9.76038 -8.89167 -4.86576 0.19579 0.30641 1.35258 1.54992 1.56279 1.64921 1.75398 1.79657 2.01636 2.33051 2.58157 2.62512 2.95958 3.42884 3.60461 3.68210 3.71873 3.75484 3.89489 3.95517 4.04045 4.09307 4.17069 4.17599 4.23181 4.26625 4.31156 4.31533 4.38236 4.41516 4.44709 4.54337 4.58817 4.66900 4.67628 4.72431 4.89085 5.03630 5.06743 5.14270 5.15385 5.20171 5.21976 5.36515 5.38691 5.39795 5.56218 5.62698 6.00694 6.49335 6.50940 6.57696 6.61585 7.26302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.075 3.925 4 C 0.087 3.913 5 O -0.315 6.315 6 C 0.032 3.968 7 C 0.511 3.489 8 O -0.574 6.574 9 N -0.703 5.703 10 C 0.140 3.860 11 H 0.061 0.939 12 C -0.121 4.121 13 C -0.108 4.108 14 C 0.013 3.987 15 H 0.153 0.847 16 C 0.236 3.764 17 N -0.504 5.504 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.159 4.159 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.086 4.086 24 O -0.551 6.551 25 Si 0.778 3.222 26 C -0.153 4.153 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.423 0.577 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.386 0.614 45 H -0.308 1.308 46 H -0.273 1.273 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 10.317 -1.575 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.041 3.959 5 O -0.229 6.229 6 C -0.045 4.045 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.357 5.357 10 C 0.036 3.964 11 H 0.079 0.921 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.008 4.008 15 H 0.170 0.830 16 C -0.081 4.081 17 N -0.181 5.181 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.177 4.177 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.194 4.194 24 O -0.359 6.359 25 Si 0.683 3.317 26 C -0.171 4.171 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.195 0.805 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.235 0.765 45 H -0.237 1.237 46 H -0.199 1.199 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.195 8.371 -1.643 9.989 hybrid contribution -0.972 -0.148 1.209 1.558 sum 4.224 8.223 -0.435 9.255 Atomic orbital electron populations 1.23272 0.76907 1.05141 1.02053 1.86189 1.22903 1.26680 1.89108 1.18686 0.90014 0.85552 1.02764 1.18587 0.88147 0.86616 1.02531 1.86226 1.18440 1.28974 1.89223 1.22824 0.79177 0.95499 1.07040 1.20547 0.83327 0.90647 0.75736 1.90785 1.64246 1.40172 1.50019 1.45695 1.04859 1.10472 1.74670 1.21092 0.94686 0.83884 0.96774 0.92077 1.21845 1.00920 0.96413 0.96776 1.21488 0.93322 0.98015 1.01896 1.19275 0.96103 0.84704 1.00708 0.82996 1.29821 0.91968 0.94998 0.91296 1.81206 1.11825 1.14468 1.10586 1.21536 1.02930 0.97002 0.93276 1.21745 0.92914 0.97310 1.02980 1.21383 1.02307 0.89223 1.04775 1.21047 0.92396 0.99165 1.00260 1.20106 0.94482 0.94633 1.02494 1.25325 1.02231 1.02360 0.89495 1.86574 1.37423 1.95607 1.16338 0.93968 0.77290 0.72279 0.88178 1.21016 1.00458 0.90615 1.05050 0.87172 0.92036 0.91581 0.85225 0.85678 0.73806 0.93286 0.88223 0.90264 0.92355 0.88893 0.91938 0.87390 0.89626 0.80517 0.82500 0.86144 0.76464 1.23708 1.19888 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.49 10.28 -79.60 -0.82 -4.31 16 3 C 0.08 0.54 6.70 22.57 0.15 0.69 16 4 C 0.09 0.36 6.70 22.57 0.15 0.51 16 5 O -0.32 -2.16 9.45 -67.03 -0.63 -2.79 16 6 C 0.03 -0.16 5.22 71.23 0.37 0.21 16 7 C 0.51 0.23 7.87 87.65 0.69 0.91 16 8 O -0.57 -7.74 16.16 15.98 0.26 -7.48 16 9 N -0.70 6.12 5.08 -442.53 -2.25 3.88 16 10 C 0.14 -0.99 2.45 44.99 0.11 -0.88 16 11 H 0.06 0.01 7.58 -2.38 -0.02 -0.01 16 12 C -0.12 0.84 5.49 30.60 0.17 1.01 16 13 C -0.11 0.67 5.16 30.60 0.16 0.83 16 14 C 0.01 -0.12 2.57 -12.60 -0.03 -0.15 16 15 H 0.15 -2.30 8.14 -2.39 -0.02 -2.31 16 16 C 0.24 0.28 14.64 89.47 1.31 1.59 16 17 N -0.50 -5.07 18.52 19.98 0.37 -4.70 16 18 C -0.11 1.12 5.16 30.61 0.16 1.28 16 19 C -0.11 1.50 5.39 30.61 0.17 1.67 16 20 C -0.16 0.65 9.04 22.35 0.20 0.85 16 21 C -0.11 0.49 8.66 22.27 0.19 0.68 16 22 C -0.12 0.09 5.35 -19.86 -0.11 -0.01 16 23 C -0.09 0.17 2.80 71.24 0.20 0.37 16 24 O -0.55 -0.90 12.83 -148.98 -1.91 -2.81 16 25 Si 0.78 -3.74 29.87 68.60 2.05 -1.69 16 26 C -0.15 -0.47 8.67 22.35 0.19 -0.27 16 27 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 28 H 0.06 0.02 7.66 -2.39 -0.02 0.00 16 29 H 0.07 -0.04 7.67 -2.39 -0.02 -0.06 16 30 H 0.13 -1.61 7.66 -2.39 -0.02 -1.63 16 31 H 0.13 -1.48 7.66 -2.39 -0.02 -1.49 16 32 H 0.42 -7.35 8.60 -92.71 -0.80 -8.14 16 33 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 34 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 35 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 38 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.11 -2.02 8.14 -2.38 -0.02 -2.04 16 40 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16 41 H 0.18 -2.25 6.30 -2.91 -0.02 -2.27 16 42 H 0.16 -1.53 4.83 -2.91 -0.01 -1.54 16 43 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 44 H 0.39 -1.57 8.70 -74.05 -0.64 -2.21 16 45 H -0.31 -1.18 7.11 99.48 0.71 -0.47 16 46 H -0.27 0.70 7.01 99.48 0.70 1.40 16 47 H 0.14 0.25 6.30 -2.91 -0.02 0.24 16 Total: 0.00 -36.98 390.34 1.87 -35.12 By element: Atomic # 1 Polarization: -25.27 SS G_CDS: -0.39 Total: -25.66 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.20 Total: 10.45 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -1.88 Total: -0.82 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -3.11 Total: -17.40 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.05 Total: -1.69 kcal Total: -36.98 1.87 -35.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.819 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds