Wall clock time and date at job start Tue Mar 9 2021 13:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33820 * 122.45626 * 2 1 4 4 C 1.50704 * 124.51541 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47442 * 329.99618 * 4 3 2 6 6 Si 1.86296 * 109.46724 * 209.99363 * 4 3 2 7 7 S 1.70611 * 110.95787 * 180.02562 * 3 2 1 8 8 C 1.75824 * 91.56638 * 0.02562 * 7 3 2 9 9 C 1.46585 * 125.46226 * 180.02562 * 8 7 3 10 10 O 1.21698 * 119.99967 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99691 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47397 * 325.00275 * 12 11 9 14 14 C 1.53002 * 109.46799 * 85.00174 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 12 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 C 1.47201 * 109.47364 * 180.02562 * 16 15 14 19 19 N 9.86025 * 128.35560 * 6.20746 * 7 1 2 20 20 C 1.52999 * 109.47159 * 59.99536 * 16 15 14 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 16 15 22 22 C 1.36656 * 109.08220 * 0.26054 * 8 7 3 23 23 H 1.08996 * 109.47272 * 89.99123 * 1 2 3 24 24 H 1.08998 * 109.47077 * 209.99725 * 1 2 3 25 25 H 1.09008 * 109.46657 * 329.99108 * 1 2 3 26 26 H 1.09007 * 109.47051 * 90.00061 * 4 3 2 27 27 H 0.96706 * 113.99483 * 300.00032 * 5 4 3 28 28 H 1.48503 * 109.99733 * 180.02562 * 6 4 3 29 29 H 1.48503 * 110.00391 * 301.31756 * 6 4 3 30 30 H 0.97006 * 119.99662 * 0.02562 * 11 9 8 31 31 H 1.08993 * 109.47662 * 299.99952 * 14 12 11 32 32 H 1.09002 * 109.47075 * 60.00457 * 14 12 11 33 33 H 1.09002 * 109.47153 * 60.00231 * 15 14 12 34 34 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.46929 * 179.97438 * 20 16 15 36 36 H 1.09002 * 109.46716 * 60.00455 * 20 16 15 37 37 H 1.09002 * 109.47153 * 299.99641 * 21 20 16 38 38 H 1.09001 * 109.46832 * 179.97438 * 21 20 16 39 39 H 1.07992 * 123.35012 * 179.73593 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5161 0.0006 5 8 0.3752 2.4983 -0.6727 6 14 2.7924 3.6828 -0.8777 7 16 3.8970 0.7891 -0.0007 8 6 3.5937 -0.9428 -0.0018 9 6 4.6231 -1.9864 -0.0023 10 8 4.3000 -3.1597 -0.0035 11 7 5.9273 -1.6465 -0.0013 12 6 6.9560 -2.6895 -0.0024 13 1 6.6117 -3.5401 0.5857 14 6 7.2251 -3.1389 -1.4400 15 6 8.3000 -4.2277 -1.4411 16 6 9.5886 -3.6730 -0.8304 17 1 9.9326 -2.8223 -1.4186 18 6 10.6229 -4.7204 -0.8321 19 7 11.4194 -5.5313 -0.8311 20 6 9.3194 -3.2236 0.6071 21 6 8.2445 -2.1347 0.6083 22 6 2.2445 -1.1601 -0.0074 23 1 -0.3633 0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.4938 2.8503 1.0284 27 1 0.4258 2.2101 -1.5944 28 1 2.2227 5.0542 -0.8834 29 1 4.1168 3.6864 -0.2060 30 1 6.1847 -0.7112 0.0000 31 1 6.3072 -3.5336 -1.8752 32 1 7.5696 -2.2882 -2.0281 33 1 7.9560 -5.0784 -0.8529 34 1 8.4921 -4.5475 -2.4653 35 1 10.2375 -2.8289 1.0423 36 1 8.9754 -4.0743 1.1953 37 1 8.5885 -1.2840 0.0200 38 1 8.0525 -1.8149 1.6324 39 1 1.8019 -2.1451 -0.0133 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16662488_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:09 Heat of formation + Delta-G solvation = -22.041783 kcal Electronic energy + Delta-G solvation = -22332.408743 eV Core-core repulsion = 18946.534564 eV Total energy + Delta-G solvation = -3385.874180 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27507 -40.18683 -39.43807 -37.47729 -37.14464 -35.24120 -32.42617 -32.09203 -30.88225 -30.28043 -26.67928 -24.92335 -24.04121 -23.79431 -21.69911 -21.42811 -20.19546 -19.37532 -18.83147 -17.96608 -17.38221 -17.07061 -16.54663 -16.33382 -15.97743 -15.70697 -15.54143 -15.15961 -14.91295 -14.69190 -14.56545 -14.41458 -14.05662 -13.94507 -13.76209 -13.50295 -13.49186 -13.18857 -13.11571 -12.97256 -12.51675 -12.48323 -12.37456 -12.35026 -12.26142 -11.81667 -11.70197 -11.47519 -11.06686 -10.76954 -10.22655 -9.71651 -9.48432 -5.23751 -0.65784 0.24303 0.66155 1.03291 1.29550 1.40737 1.77582 1.78297 1.80529 1.94341 2.15599 2.84336 3.19178 3.40101 3.47872 3.50717 3.68938 3.78877 3.93638 3.98158 4.06659 4.12741 4.17637 4.21621 4.23141 4.38305 4.43839 4.55206 4.56810 4.75005 4.78356 4.79982 4.86012 4.88510 4.94251 5.00558 5.08242 5.13688 5.34129 5.35979 5.42538 6.31214 6.33257 6.59256 7.06930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.091 4.091 3 C -0.236 4.236 4 C -0.028 4.028 5 O -0.529 6.529 6 Si 0.659 3.341 7 S 0.193 5.807 8 C -0.263 4.263 9 C 0.594 3.406 10 O -0.523 6.523 11 N -0.725 5.725 12 C 0.142 3.858 13 H 0.096 0.904 14 C -0.129 4.129 15 C -0.109 4.109 16 C 0.007 3.993 17 H 0.117 0.883 18 C 0.206 3.794 19 N -0.430 5.430 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.046 4.046 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.381 0.619 28 H -0.234 1.234 29 H -0.237 1.237 30 H 0.398 0.602 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 6.104 -2.014 6.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.356 4.356 4 C -0.141 4.141 5 O -0.335 6.335 6 Si 0.559 3.441 7 S 0.461 5.539 8 C -0.383 4.383 9 C 0.380 3.620 10 O -0.400 6.400 11 N -0.376 5.376 12 C 0.038 3.962 13 H 0.114 0.886 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.015 4.015 17 H 0.135 0.865 18 C -0.112 4.112 19 N -0.105 5.105 20 C -0.147 4.147 21 C -0.164 4.164 22 C -0.079 4.079 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.229 0.771 28 H -0.158 1.158 29 H -0.161 1.161 30 H 0.233 0.767 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.314 5.869 -1.365 6.168 hybrid contribution -1.636 -0.405 0.510 1.761 sum -0.322 5.464 -0.855 5.540 Atomic orbital electron populations 1.20646 0.88533 1.03391 1.02887 1.18729 0.98473 0.90492 1.02647 1.24468 0.98389 1.00942 1.11770 1.24472 0.92246 0.95324 1.02029 1.86536 1.27673 1.90051 1.29255 0.94812 0.78180 0.80757 0.90374 1.82996 1.03333 0.98342 1.69211 1.24579 0.98008 0.97017 1.18668 1.16934 0.81615 0.87408 0.76037 1.90865 1.81561 1.18136 1.49469 1.45918 1.05320 1.10195 1.76131 1.21111 0.86833 0.91109 0.97114 0.88643 1.21932 0.99411 0.98819 0.96569 1.21536 0.92322 0.98885 1.02124 1.18989 0.90081 0.92876 0.99511 0.86549 1.29184 0.94126 0.94395 0.93534 1.81317 1.10705 1.10466 1.08059 1.21506 0.99628 0.99400 0.94199 1.21811 0.93631 0.98635 1.02333 1.20750 0.90950 1.00158 0.96064 0.90891 0.91913 0.89692 0.85902 0.77090 1.15781 1.16114 0.76744 0.90312 0.90894 0.90477 0.90273 0.90051 0.90390 0.90473 0.90195 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.13 8.67 36.00 0.31 0.44 16 2 C -0.09 0.04 5.75 -106.45 -0.61 -0.57 16 3 C -0.24 0.29 5.53 -35.86 -0.20 0.09 16 4 C -0.03 0.06 2.76 36.01 0.10 0.15 16 5 O -0.53 1.06 9.85 -35.23 -0.35 0.71 16 6 Si 0.66 -1.78 31.32 -169.99 -5.32 -7.10 16 7 S 0.19 -0.35 19.78 -107.50 -2.13 -2.48 16 8 C -0.26 -0.09 6.45 -36.79 -0.24 -0.33 16 9 C 0.59 0.78 7.75 -12.89 -0.10 0.68 16 10 O -0.52 -2.57 16.50 5.19 0.09 -2.48 16 11 N -0.72 1.36 5.07 -55.15 -0.28 1.08 16 12 C 0.14 -0.37 2.46 -67.93 -0.17 -0.54 16 13 H 0.10 -0.07 7.57 -51.93 -0.39 -0.46 16 14 C -0.13 0.38 5.49 -26.73 -0.15 0.24 16 15 C -0.11 0.35 5.16 -26.73 -0.14 0.21 16 16 C 0.01 -0.02 2.56 -93.40 -0.24 -0.26 16 17 H 0.12 -0.65 8.14 -51.93 -0.42 -1.07 16 18 C 0.21 0.11 14.65 -20.74 -0.30 -0.20 16 19 N -0.43 -1.89 18.54 42.18 0.78 -1.10 16 20 C -0.11 0.46 5.16 -26.73 -0.14 0.32 16 21 C -0.13 0.60 5.39 -26.73 -0.14 0.46 16 22 C -0.05 -0.03 9.80 -40.43 -0.40 -0.42 16 23 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 24 H 0.06 -0.08 8.13 -51.93 -0.42 -0.50 16 25 H 0.08 -0.05 6.41 -51.92 -0.33 -0.38 16 26 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 27 H 0.38 -2.03 8.66 45.56 0.39 -1.64 16 28 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 29 H -0.24 0.28 7.09 56.52 0.40 0.68 16 30 H 0.40 -1.58 7.72 -40.82 -0.31 -1.90 16 31 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 33 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 35 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 36 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 37 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 38 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 39 H 0.16 0.10 8.06 -52.49 -0.42 -0.32 16 LS Contribution 338.80 15.07 5.11 5.11 Total: 0.00 -8.30 338.80 -9.84 -18.14 By element: Atomic # 1 Polarization: -6.81 SS G_CDS: -5.33 Total: -12.14 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.41 Total: 0.27 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: 0.50 Total: -0.03 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -0.26 Total: -1.77 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -5.32 Total: -7.10 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.13 Total: -2.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -8.30 -9.84 -18.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.900 kcal (2) G-P(sol) polarization free energy of solvation -8.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds