Wall clock time and date at job start Tue Mar 9 2021 13:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33820 * 122.45626 * 2 1 4 4 C 1.50704 * 124.51541 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47442 * 329.99618 * 4 3 2 6 6 Si 1.86296 * 109.46724 * 209.99363 * 4 3 2 7 7 S 1.70611 * 110.95787 * 180.02562 * 3 2 1 8 8 C 1.75824 * 91.56638 * 0.02562 * 7 3 2 9 9 C 1.46585 * 125.46226 * 180.02562 * 8 7 3 10 10 O 1.21698 * 119.99967 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99691 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47397 * 325.00275 * 12 11 9 14 14 C 1.53002 * 109.46799 * 85.00174 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 12 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 C 1.47201 * 109.47364 * 180.02562 * 16 15 14 19 19 N 9.86025 * 128.35560 * 6.20746 * 7 1 2 20 20 C 1.52999 * 109.47159 * 59.99536 * 16 15 14 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 16 15 22 22 C 1.36656 * 109.08220 * 0.26054 * 8 7 3 23 23 H 1.08996 * 109.47272 * 89.99123 * 1 2 3 24 24 H 1.08998 * 109.47077 * 209.99725 * 1 2 3 25 25 H 1.09008 * 109.46657 * 329.99108 * 1 2 3 26 26 H 1.09007 * 109.47051 * 90.00061 * 4 3 2 27 27 H 0.96706 * 113.99483 * 300.00032 * 5 4 3 28 28 H 1.48503 * 109.99733 * 180.02562 * 6 4 3 29 29 H 1.48503 * 110.00391 * 301.31756 * 6 4 3 30 30 H 0.97006 * 119.99662 * 0.02562 * 11 9 8 31 31 H 1.08993 * 109.47662 * 299.99952 * 14 12 11 32 32 H 1.09002 * 109.47075 * 60.00457 * 14 12 11 33 33 H 1.09002 * 109.47153 * 60.00231 * 15 14 12 34 34 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.46929 * 179.97438 * 20 16 15 36 36 H 1.09002 * 109.46716 * 60.00455 * 20 16 15 37 37 H 1.09002 * 109.47153 * 299.99641 * 21 20 16 38 38 H 1.09001 * 109.46832 * 179.97438 * 21 20 16 39 39 H 1.07992 * 123.35012 * 179.73593 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5161 0.0006 5 8 0.3752 2.4983 -0.6727 6 14 2.7924 3.6828 -0.8777 7 16 3.8970 0.7891 -0.0007 8 6 3.5937 -0.9428 -0.0018 9 6 4.6231 -1.9864 -0.0023 10 8 4.3000 -3.1597 -0.0035 11 7 5.9273 -1.6465 -0.0013 12 6 6.9560 -2.6895 -0.0024 13 1 6.6117 -3.5401 0.5857 14 6 7.2251 -3.1389 -1.4400 15 6 8.3000 -4.2277 -1.4411 16 6 9.5886 -3.6730 -0.8304 17 1 9.9326 -2.8223 -1.4186 18 6 10.6229 -4.7204 -0.8321 19 7 11.4194 -5.5313 -0.8311 20 6 9.3194 -3.2236 0.6071 21 6 8.2445 -2.1347 0.6083 22 6 2.2445 -1.1601 -0.0074 23 1 -0.3633 0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.4938 2.8503 1.0284 27 1 0.4258 2.2101 -1.5944 28 1 2.2227 5.0542 -0.8834 29 1 4.1168 3.6864 -0.2060 30 1 6.1847 -0.7112 0.0000 31 1 6.3072 -3.5336 -1.8752 32 1 7.5696 -2.2882 -2.0281 33 1 7.9560 -5.0784 -0.8529 34 1 8.4921 -4.5475 -2.4653 35 1 10.2375 -2.8289 1.0423 36 1 8.9754 -4.0743 1.1953 37 1 8.5885 -1.2840 0.0200 38 1 8.0525 -1.8149 1.6324 39 1 1.8019 -2.1451 -0.0133 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:09 Heat of formation + Delta-G solvation = -20.107454 kcal Electronic energy + Delta-G solvation = -22332.324865 eV Core-core repulsion = 18946.534564 eV Total energy + Delta-G solvation = -3385.790301 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23382 -40.06944 -39.37801 -37.43435 -37.15599 -35.24073 -32.36652 -31.81613 -30.75131 -30.17123 -26.60532 -24.80706 -23.77624 -23.68216 -21.67766 -21.22258 -20.10345 -19.29350 -18.71188 -17.85927 -17.28739 -16.99686 -16.45530 -16.20485 -15.92700 -15.61637 -15.33250 -15.14544 -14.80525 -14.61143 -14.50498 -14.36457 -13.95823 -13.88674 -13.73612 -13.40735 -13.26011 -13.10199 -13.04107 -12.90046 -12.41210 -12.37062 -12.18102 -12.14315 -12.08465 -11.73162 -11.45286 -11.28874 -11.13307 -10.63267 -10.17012 -9.63301 -9.37631 -5.03092 -0.63077 0.31829 0.73106 1.15105 1.36343 1.57336 1.74081 1.77670 1.93687 2.02702 2.11903 2.93910 3.40098 3.62259 3.67413 3.73916 3.79940 4.01406 4.13512 4.20666 4.22711 4.30024 4.39236 4.42416 4.47952 4.52845 4.62312 4.67912 4.85341 4.86872 4.92917 5.04415 5.05968 5.13161 5.18027 5.19860 5.33082 5.34086 5.43177 5.50332 5.51557 6.40481 6.57886 6.69467 7.08583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.101 4.101 3 C -0.237 4.237 4 C -0.033 4.033 5 O -0.541 6.541 6 Si 0.731 3.269 7 S 0.244 5.756 8 C -0.281 4.281 9 C 0.590 3.410 10 O -0.570 6.570 11 N -0.709 5.709 12 C 0.139 3.861 13 H 0.070 0.930 14 C -0.121 4.121 15 C -0.106 4.106 16 C 0.013 3.987 17 H 0.151 0.849 18 C 0.236 3.764 19 N -0.504 5.504 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.059 4.059 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.396 0.604 28 H -0.277 1.277 29 H -0.250 1.250 30 H 0.411 0.589 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 8.247 -2.459 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.357 4.357 4 C -0.145 4.145 5 O -0.349 6.349 6 Si 0.634 3.366 7 S 0.512 5.488 8 C -0.401 4.401 9 C 0.377 3.623 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.035 3.965 13 H 0.088 0.912 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.008 4.008 17 H 0.168 0.832 18 C -0.080 4.080 19 N -0.180 5.180 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.093 4.093 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.138 0.862 27 H 0.246 0.754 28 H -0.203 1.203 29 H -0.175 1.175 30 H 0.248 0.752 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.985 8.022 -1.817 8.461 hybrid contribution -1.901 -0.993 0.661 2.244 sum 0.084 7.029 -1.156 7.124 Atomic orbital electron populations 1.20619 0.88131 1.02853 1.03486 1.18757 0.98876 0.90360 1.03301 1.24671 0.99008 1.01107 1.10885 1.24627 0.92638 0.94960 1.02276 1.86509 1.27701 1.90101 1.30560 0.93975 0.76059 0.77559 0.89055 1.82721 1.02292 0.95813 1.67958 1.24608 0.97748 0.98441 1.19327 1.17156 0.82655 0.86957 0.75537 1.90837 1.82369 1.19998 1.51873 1.45835 1.04439 1.11134 1.74588 1.21188 0.87569 0.90445 0.97303 0.91188 1.21846 0.98329 0.99445 0.96337 1.21481 0.92465 0.98483 1.02105 1.19261 0.88496 0.92506 1.00545 0.83151 1.29903 0.93278 0.93590 0.91275 1.81340 1.13282 1.12784 1.10612 1.21503 1.00263 0.99294 0.93465 1.21766 0.91794 0.98967 1.02848 1.20790 0.91470 1.00209 0.96848 0.89768 0.92313 0.90257 0.86231 0.75401 1.20282 1.17540 0.75196 0.92745 0.88561 0.91969 0.89973 0.88930 0.91602 0.87783 0.89831 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.21 8.67 71.23 0.62 0.83 16 2 C -0.10 0.06 5.75 -21.05 -0.12 -0.06 16 3 C -0.24 0.73 5.53 24.68 0.14 0.87 16 4 C -0.03 0.16 2.76 71.24 0.20 0.35 16 5 O -0.54 2.50 9.85 -148.98 -1.47 1.04 16 6 Si 0.73 -4.70 31.32 68.60 2.15 -2.55 16 7 S 0.24 -1.16 19.78 -56.49 -1.12 -2.28 16 8 C -0.28 -0.31 6.45 24.08 0.16 -0.16 16 9 C 0.59 2.11 7.75 86.42 0.67 2.78 16 10 O -0.57 -6.93 16.50 -4.34 -0.07 -7.00 16 11 N -0.71 2.95 5.07 -446.60 -2.27 0.69 16 12 C 0.14 -0.76 2.46 44.99 0.11 -0.65 16 13 H 0.07 0.01 7.57 -2.39 -0.02 -0.01 16 14 C -0.12 0.77 5.49 30.59 0.17 0.94 16 15 C -0.11 0.70 5.16 30.60 0.16 0.85 16 16 C 0.01 -0.11 2.56 -12.60 -0.03 -0.14 16 17 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 18 C 0.24 0.25 14.65 89.43 1.31 1.56 16 19 N -0.50 -4.97 18.54 20.01 0.37 -4.60 16 20 C -0.11 1.03 5.16 30.59 0.16 1.19 16 21 C -0.12 1.33 5.39 30.59 0.16 1.49 16 22 C -0.06 -0.14 9.80 21.72 0.21 0.07 16 23 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 25 H 0.08 -0.07 6.41 -2.38 -0.02 -0.09 16 26 H 0.12 -0.47 7.96 -2.38 -0.02 -0.49 16 27 H 0.40 -4.60 8.66 -74.05 -0.64 -5.24 16 28 H -0.28 -0.21 7.11 99.48 0.71 0.49 16 29 H -0.25 1.04 7.09 99.48 0.71 1.75 16 30 H 0.41 -3.97 7.72 -92.70 -0.72 -4.69 16 31 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 36 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.10 -1.67 8.14 -2.39 -0.02 -1.69 16 38 H 0.08 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.14 0.54 8.06 -2.91 -0.02 0.52 16 Total: 0.00 -22.64 338.80 1.27 -21.37 By element: Atomic # 1 Polarization: -16.36 SS G_CDS: -0.23 Total: -16.60 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 3.90 Total: 9.93 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -1.89 Total: -3.91 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -1.54 Total: -5.96 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.15 Total: -2.55 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -1.12 Total: -2.28 kcal Total: -22.64 1.27 -21.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -22.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds