Wall clock time and date at job start Tue Mar 9 2021 13:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47824 * 331.79036 * 3 2 1 5 5 H 1.09007 * 112.84733 * 316.20379 * 4 3 2 6 6 C 1.53780 * 113.62018 * 184.99875 * 4 3 2 7 7 C 1.53775 * 87.08390 * 220.02217 * 6 4 3 8 8 H 1.09006 * 113.61778 * 270.80301 * 7 6 4 9 9 N 1.46499 * 113.61462 * 139.98289 * 7 6 4 10 10 C 1.34784 * 119.99971 * 154.99913 * 9 7 6 11 11 O 1.21274 * 119.99897 * 359.72827 * 10 9 7 12 12 C 1.50695 * 119.99635 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46874 * 180.02562 * 12 10 9 14 14 C 1.36837 * 125.05793 * 265.02558 * 13 12 10 15 15 C 1.34238 * 109.93276 * 179.97438 * 14 13 12 16 16 C 1.50705 * 126.49801 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.46828 * 104.97925 * 16 15 14 18 18 Si 1.86299 * 109.47111 * 344.98057 * 16 15 14 19 19 C 1.46493 * 107.00322 * 0.02562 * 15 14 13 20 20 C 1.39587 * 134.03727 * 180.02562 * 19 15 14 21 21 C 1.36669 * 119.75916 * 179.97438 * 20 19 15 22 22 C 1.38790 * 120.53320 * 0.02562 * 21 20 19 23 23 C 1.37792 * 120.66301 * 359.97438 * 22 21 20 24 24 C 1.37687 * 125.06175 * 84.72163 * 13 12 10 25 25 C 1.53784 * 87.08300 * 25.43287 * 7 6 4 26 26 H 1.09005 * 109.47133 * 211.78910 * 3 2 1 27 27 H 1.09004 * 109.47062 * 91.80012 * 3 2 1 28 28 H 1.09005 * 113.61262 * 105.47247 * 6 4 3 29 29 H 1.08999 * 113.69144 * 334.58223 * 6 4 3 30 30 H 0.96999 * 119.99984 * 334.99761 * 9 7 6 31 31 H 1.09005 * 109.47403 * 300.00056 * 12 10 9 32 32 H 1.09002 * 109.47422 * 60.00295 * 12 10 9 33 33 H 1.08001 * 125.03275 * 359.96524 * 14 13 12 34 34 H 1.08996 * 109.47071 * 224.97898 * 16 15 14 35 35 H 0.96711 * 113.99804 * 299.99635 * 17 16 15 36 36 H 1.48505 * 109.99955 * 179.97438 * 18 16 15 37 37 H 1.48501 * 109.99712 * 301.31548 * 18 16 15 38 38 H 1.07990 * 120.12371 * 359.97438 * 20 19 15 39 39 H 1.08001 * 119.73200 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.66858 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.11090 * 180.02562 * 23 22 21 42 42 H 1.08996 * 113.60949 * 89.11592 * 25 7 6 43 43 H 1.09001 * 113.61595 * 220.01845 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.2702 0.6818 5 1 2.5763 -1.5065 1.5974 6 6 4.6474 -1.3109 0.8433 7 6 4.5681 -2.8012 0.4726 8 1 4.4236 -3.4576 1.3307 9 7 5.6520 -3.2454 -0.4072 10 6 6.0229 -4.5412 -0.4181 11 8 5.4627 -5.3384 0.3040 12 6 7.1374 -4.9982 -1.3236 13 7 7.3474 -6.4379 -1.1512 14 6 8.2723 -7.0029 -0.3160 15 6 8.2036 -8.3411 -0.3954 16 6 9.0509 -9.3289 0.3646 17 8 8.2749 -9.9161 1.4111 18 14 10.5204 -8.4505 1.0992 19 6 7.1488 -8.6594 -1.3608 20 6 6.6171 -9.8497 -1.8598 21 6 5.6070 -9.8084 -2.7795 22 6 5.1056 -8.5923 -3.2221 23 6 5.6159 -7.4055 -2.7428 24 6 6.6393 -7.4238 -1.8011 25 6 3.2666 -2.4653 -0.2746 26 1 2.9709 0.8744 0.5414 27 1 2.9712 0.0331 -1.0272 28 1 4.9834 -1.1323 1.8648 29 1 5.1815 -0.7064 0.1103 30 1 6.1027 -2.6071 -0.9820 31 1 6.8712 -4.7918 -2.3603 32 1 8.0534 -4.4643 -1.0705 33 1 8.9564 -6.4535 0.3138 34 1 9.3958 -10.1093 -0.3137 35 1 7.9344 -9.2784 2.0535 36 1 11.3638 -9.4137 1.8519 37 1 11.3182 -7.8086 0.0237 38 1 7.0024 -10.7997 -1.5204 39 1 5.1956 -10.7296 -3.1650 40 1 4.3075 -8.5759 -3.9496 41 1 5.2188 -6.4642 -3.0930 42 1 3.4221 -2.1762 -1.3139 43 1 2.4880 -3.2188 -0.1557 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16663504_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:18 Heat of formation + Delta-G solvation = 51.900762 kcal Electronic energy + Delta-G solvation = -26599.443574 eV Core-core repulsion = 22805.745345 eV Total energy + Delta-G solvation = -3793.698229 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50645 -41.07100 -39.56689 -38.08877 -37.62204 -37.42357 -34.79838 -33.98045 -31.63110 -30.92970 -30.22518 -28.83734 -26.58183 -25.92989 -24.28806 -23.58945 -22.57151 -21.61003 -20.75569 -20.47250 -18.78681 -18.43268 -18.29989 -17.69694 -17.27388 -16.79092 -16.41333 -16.32004 -16.20914 -15.94612 -15.50187 -15.43347 -15.20172 -14.88043 -14.70022 -14.58018 -14.28155 -14.03969 -13.86063 -13.72731 -13.55786 -13.27927 -13.09824 -12.87218 -12.72217 -12.56137 -12.49533 -12.22446 -12.10825 -11.99008 -11.80338 -11.51373 -11.24280 -11.00669 -10.52825 -10.28875 -9.98431 -9.15074 -8.61160 -4.98020 0.14398 0.63381 1.38640 1.45052 1.54846 1.71372 1.74123 1.83581 1.88876 2.02295 2.33845 2.94387 3.11373 3.56663 3.60543 3.69967 3.72074 3.74592 3.81233 3.90031 3.93000 3.98438 4.07579 4.20294 4.23302 4.31285 4.41433 4.48720 4.56055 4.59883 4.72379 4.79149 4.82683 4.88191 4.89410 4.95009 4.98961 5.12078 5.13373 5.23137 5.36077 5.49951 5.65401 5.68231 5.73339 5.75863 6.21519 6.27178 6.60139 6.68927 6.83260 7.27244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.232 3.768 3 C -0.010 4.010 4 C -0.103 4.103 5 H 0.087 0.913 6 C -0.112 4.112 7 C 0.113 3.887 8 H 0.084 0.916 9 N -0.698 5.698 10 C 0.491 3.509 11 O -0.575 6.575 12 C 0.086 3.914 13 N -0.466 5.466 14 C 0.082 3.918 15 C -0.228 4.228 16 C -0.049 4.049 17 O -0.565 6.565 18 Si 0.798 3.202 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.155 4.155 22 C -0.110 4.110 23 C -0.132 4.132 24 C 0.091 3.909 25 C -0.155 4.155 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.424 0.576 31 H 0.141 0.859 32 H 0.168 0.832 33 H 0.211 0.789 34 H 0.090 0.910 35 H 0.390 0.610 36 H -0.303 1.303 37 H -0.273 1.273 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.534 11.082 -1.565 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.084 4.084 3 C -0.050 4.050 4 C -0.124 4.124 5 H 0.105 0.895 6 C -0.150 4.150 7 C 0.008 3.992 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.276 3.724 11 O -0.453 6.453 12 C -0.039 4.039 13 N -0.148 5.148 14 C -0.043 4.043 15 C -0.235 4.235 16 C -0.158 4.158 17 O -0.373 6.373 18 Si 0.702 3.298 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.174 4.174 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.014 4.014 25 C -0.194 4.194 26 H 0.163 0.837 27 H 0.160 0.840 28 H 0.105 0.895 29 H 0.146 0.854 30 H 0.262 0.738 31 H 0.159 0.841 32 H 0.186 0.814 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.240 0.760 36 H -0.231 1.231 37 H -0.199 1.199 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.407 10.392 -1.390 12.287 hybrid contribution -0.423 -0.905 -0.623 1.177 sum 5.984 9.487 -2.013 11.396 Atomic orbital electron populations 1.81321 1.16072 1.11149 1.11412 1.30219 0.96294 0.90954 0.90961 1.19711 0.78015 1.00868 1.06359 1.22255 0.97703 0.93393 0.99004 0.89455 1.23339 0.93914 0.93097 1.04621 1.22447 0.86579 0.96714 0.93442 0.89775 1.45774 1.37058 1.08536 1.43718 1.21438 0.84568 0.83057 0.83322 1.90809 1.56583 1.54608 1.43315 1.22047 1.00885 0.78566 1.02361 1.43477 1.30101 1.04996 1.36251 1.22098 0.94466 0.92534 0.95239 1.20801 1.03329 0.94252 1.05102 1.24733 1.01878 0.98329 0.90828 1.86444 1.72705 1.38765 1.39355 0.93968 0.73089 0.81989 0.80767 1.19398 0.99511 0.92947 1.00484 1.20437 0.96870 0.96753 0.97046 1.20901 0.98287 0.98942 0.99297 1.21119 1.00117 0.91459 1.00250 1.20247 0.96977 0.99554 0.98476 1.18377 0.96954 0.87934 0.98164 1.23698 0.97184 0.97793 1.00679 0.83699 0.84047 0.89531 0.85391 0.73773 0.84124 0.81450 0.77266 0.89245 0.76041 1.23080 1.19892 0.86754 0.84833 0.83809 0.84767 0.87241 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.69 18.54 20.00 0.37 -4.31 16 2 C 0.23 -0.33 15.42 89.44 1.38 1.05 16 3 C -0.01 0.15 5.54 28.79 0.16 0.31 16 4 C -0.10 1.26 3.62 -10.27 -0.04 1.22 16 5 H 0.09 -0.75 8.12 -2.38 -0.02 -0.77 16 6 C -0.11 1.80 7.39 31.12 0.23 2.03 16 7 C 0.11 -1.00 4.24 45.52 0.19 -0.81 16 8 H 0.08 -0.12 7.46 -2.38 -0.02 -0.14 16 9 N -0.70 8.20 5.35 -440.04 -2.36 5.85 16 10 C 0.49 -2.10 7.90 87.65 0.69 -1.41 16 11 O -0.57 -4.82 16.02 -3.01 -0.05 -4.87 16 12 C 0.09 -0.84 6.48 85.63 0.55 -0.29 16 13 N -0.47 -0.07 2.27 -519.97 -1.18 -1.25 16 14 C 0.08 -0.05 9.89 83.00 0.82 0.77 16 15 C -0.23 -1.23 5.57 -18.62 -0.10 -1.33 16 16 C -0.05 -0.20 3.06 71.24 0.22 0.01 16 17 O -0.57 -3.66 12.88 -148.98 -1.92 -5.57 16 18 Si 0.80 -1.54 30.75 68.60 2.11 0.57 16 19 C -0.12 -1.23 6.35 -20.20 -0.13 -1.36 16 20 C -0.09 -0.99 10.05 22.23 0.22 -0.77 16 21 C -0.16 -1.21 9.97 22.03 0.22 -0.99 16 22 C -0.11 -0.61 10.01 22.30 0.22 -0.39 16 23 C -0.13 -0.69 10.00 22.37 0.22 -0.47 16 24 C 0.09 0.63 6.80 39.03 0.27 0.90 16 25 C -0.15 1.33 7.43 31.12 0.23 1.56 16 26 H 0.15 -2.85 8.14 -2.38 -0.02 -2.87 16 27 H 0.14 -2.81 7.84 -2.39 -0.02 -2.83 16 28 H 0.09 -1.34 8.14 -2.38 -0.02 -1.36 16 29 H 0.13 -2.85 8.08 -2.39 -0.02 -2.87 16 30 H 0.42 -8.54 8.73 -92.71 -0.81 -9.35 16 31 H 0.14 -2.02 8.14 -2.38 -0.02 -2.04 16 32 H 0.17 -3.14 8.12 -2.39 -0.02 -3.16 16 33 H 0.21 -2.09 6.35 -2.91 -0.02 -2.11 16 34 H 0.09 0.61 7.96 -2.39 -0.02 0.59 16 35 H 0.39 -0.43 8.70 -74.05 -0.64 -1.08 16 36 H -0.30 -1.81 7.11 99.48 0.71 -1.11 16 37 H -0.27 -0.25 7.11 99.48 0.71 0.45 16 38 H 0.11 1.17 8.06 -2.92 -0.02 1.15 16 39 H 0.13 0.52 8.06 -2.91 -0.02 0.49 16 40 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.11 -1.36 7.90 -2.39 -0.02 -1.37 16 43 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -39.96 373.79 1.98 -37.98 By element: Atomic # 1 Polarization: -28.06 SS G_CDS: -0.36 Total: -28.42 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.36 Total: 0.04 kcal Atomic # 7 Polarization: 3.45 SS G_CDS: -3.17 Total: 0.28 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.97 Total: -10.45 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.11 Total: 0.57 kcal Total: -39.96 1.98 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.879 kcal (2) G-P(sol) polarization free energy of solvation -39.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds