Wall clock time and date at job start Tue Mar 9 2021 13:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 117.00003 * 2 1 4 4 O 1.20820 * 120.00492 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99750 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84305 * 50.33431 * 5 3 2 7 7 C 1.53779 * 113.61130 * 181.52457 * 5 3 2 8 8 C 1.53780 * 87.07817 * 139.98363 * 7 5 3 9 9 H 1.09006 * 113.61888 * 220.02068 * 8 7 5 10 10 N 1.46500 * 113.61543 * 89.20081 * 8 7 5 11 11 C 1.35313 * 125.86705 * 274.71517 * 10 8 7 12 12 C 1.35351 * 106.17448 * 179.90227 * 11 10 8 13 13 C 1.50704 * 126.74986 * 180.12615 * 12 11 10 14 14 N 1.46496 * 109.47066 * 95.25035 * 13 12 11 15 15 C 1.34780 * 120.00068 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99707 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99926 * 180.02562 * 15 14 13 18 18 C 1.53009 * 109.47036 * 294.99775 * 17 15 14 19 19 O 1.42898 * 109.47012 * 174.99993 * 17 15 14 20 20 C 1.35905 * 116.99988 * 204.94897 * 19 17 15 21 21 C 1.38732 * 120.05327 * 174.27680 * 20 19 17 22 22 C 1.38147 * 119.94182 * 179.74261 * 21 20 19 23 23 C 1.38269 * 120.05427 * 0.50729 * 22 21 20 24 24 C 1.50695 * 119.94568 * 179.74573 * 23 22 21 25 25 O 1.42896 * 109.47189 * 245.02193 * 24 23 22 26 26 Si 1.86303 * 109.46982 * 5.01844 * 24 23 22 27 27 C 1.38268 * 120.11155 * 359.76646 * 23 22 21 28 28 C 1.38141 * 120.05566 * 359.97438 * 27 23 22 29 29 N 1.33764 * 106.49877 * 0.35499 * 12 11 10 30 30 N 1.28644 * 108.88432 * 359.77237 * 29 12 11 31 31 C 1.53775 * 113.61522 * 279.13258 * 5 3 2 32 32 H 1.09000 * 109.47047 * 300.00778 * 1 2 3 33 33 H 1.09004 * 109.46646 * 60.00112 * 1 2 3 34 34 H 1.08992 * 109.47357 * 180.02562 * 1 2 3 35 35 H 1.08997 * 113.62001 * 254.52975 * 7 5 3 36 36 H 1.09001 * 113.61559 * 25.44123 * 7 5 3 37 37 H 1.08004 * 126.91300 * 0.02562 * 11 10 8 38 38 H 1.09006 * 109.47033 * 215.24733 * 13 12 11 39 39 H 1.09000 * 109.47222 * 335.24861 * 13 12 11 40 40 H 0.97007 * 119.99978 * 359.97438 * 14 13 12 41 41 H 1.08993 * 109.47440 * 54.99651 * 17 15 14 42 42 H 1.08992 * 109.47140 * 60.00126 * 18 17 15 43 43 H 1.08996 * 109.46817 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.46627 * 300.00361 * 18 17 15 45 45 H 1.07997 * 120.03346 * 359.97438 * 21 20 19 46 46 H 1.07999 * 119.97471 * 180.22952 * 22 21 20 47 47 H 1.08999 * 109.47526 * 125.01989 * 24 23 22 48 48 H 0.96696 * 114.00305 * 59.99978 * 25 24 23 49 49 H 1.48506 * 109.99840 * 179.97438 * 26 24 23 50 50 H 1.48493 * 110.00236 * 301.32158 * 26 24 23 51 51 H 1.08005 * 119.97343 * 179.97438 * 27 23 22 52 52 H 1.07999 * 120.02789 * 179.97438 * 28 27 23 53 53 H 1.08997 * 113.61642 * 334.57341 * 31 5 3 54 54 H 1.09008 * 113.60836 * 105.46815 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2747 0.0006 6 1 4.0229 0.6564 -0.7724 7 6 4.1079 2.7136 0.0380 8 6 5.1822 2.2003 1.0113 9 1 5.3981 2.8904 1.8269 10 7 6.3916 1.7105 0.3453 11 6 6.5766 0.4632 -0.1455 12 6 7.8232 0.4464 -0.6726 13 6 8.5019 -0.7187 -1.3457 14 7 8.3174 -0.6202 -2.7956 15 6 8.8425 -1.5594 -3.6072 16 8 9.4682 -2.4859 -3.1370 17 6 8.6531 -1.4578 -5.0987 18 6 7.1679 -1.6055 -5.4355 19 8 9.3935 -2.4953 -5.7447 20 6 9.7716 -2.2743 -7.0313 21 6 10.5925 -3.1850 -7.6804 22 6 10.9711 -2.9608 -8.9899 23 6 10.5411 -1.8246 -9.6502 24 6 10.9602 -1.5795 -11.0767 25 8 11.7842 -0.4137 -11.1376 26 14 11.9172 -3.0497 -11.7041 27 6 9.7274 -0.9126 -9.0035 28 6 9.3417 -1.1349 -7.6958 29 7 8.3360 1.6658 -0.4741 30 7 7.4629 2.3911 0.1313 31 6 4.1928 1.0839 1.3920 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 4.5100 3.0538 -0.9162 36 1 3.4179 3.4282 0.4867 37 1 5.8708 -0.3540 -0.1231 38 1 9.5668 -0.7027 -1.1130 39 1 8.0655 -1.6506 -0.9863 40 1 7.8172 0.1211 -3.1716 41 1 9.0093 -0.4876 -5.4450 42 1 6.6031 -0.8141 -4.9428 43 1 7.0310 -1.5324 -6.5144 44 1 6.8117 -2.5757 -5.0892 45 1 10.9324 -4.0704 -7.1637 46 1 11.6072 -3.6712 -9.4969 47 1 10.0750 -1.4314 -11.6953 48 1 12.5919 -0.4749 -10.6094 49 1 12.3358 -2.8208 -13.1104 50 1 13.1096 -3.2817 -10.8500 51 1 9.3931 -0.0256 -9.5213 52 1 8.7065 -0.4221 -7.1911 53 1 3.5260 1.3521 2.2115 54 1 4.6632 0.1102 1.5291 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16723000_10157680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:59 Heat of formation + Delta-G solvation = -17.428743 kcal Electronic energy + Delta-G solvation = -38864.672342 eV Core-core repulsion = 33579.882417 eV Total energy + Delta-G solvation = -5284.789926 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.182 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -44.54284 -41.91754 -41.76473 -40.60532 -39.79261 -39.09651 -37.51285 -37.28842 -36.36248 -34.22352 -33.48207 -32.32119 -32.02117 -31.35423 -29.62668 -28.18087 -27.42787 -26.99112 -26.62630 -25.19323 -24.36208 -24.07116 -22.71161 -22.36713 -22.19619 -21.42331 -20.71316 -19.49896 -19.13214 -18.77044 -18.34247 -18.02459 -17.80295 -17.60256 -17.42614 -17.04681 -16.90507 -16.55609 -16.34094 -16.17648 -16.05228 -15.86215 -15.60523 -15.45560 -15.17848 -14.99124 -14.75786 -14.59587 -14.33512 -14.28502 -14.21656 -13.99362 -13.83650 -13.64879 -13.59465 -13.36477 -13.31841 -13.25928 -12.94089 -12.90123 -12.70962 -12.24797 -12.22694 -12.14478 -12.05804 -12.00275 -11.86585 -11.84118 -11.57627 -11.51606 -11.17879 -11.01162 -10.57855 -10.38240 -10.27849 -10.03186 -9.22386 -4.91044 0.25155 0.33542 0.45256 1.02412 1.06993 1.18752 1.33666 1.40547 1.60590 1.66691 1.71743 1.96416 2.56264 2.65201 2.75319 3.05790 3.15052 3.28521 3.45738 3.46879 3.61969 3.67014 3.68320 3.73838 3.83427 3.87008 3.93334 3.94499 3.98999 4.15428 4.19699 4.27114 4.27339 4.30232 4.36320 4.43456 4.48824 4.55033 4.58018 4.61250 4.61829 4.67213 4.71368 4.71793 4.72330 4.84423 4.89568 4.97309 5.00300 5.11438 5.17620 5.20936 5.29938 5.32793 5.48977 5.55219 5.68402 6.23565 6.40481 6.49678 6.61612 7.03383 7.37605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.112 4.112 6 H 0.149 0.851 7 C -0.118 4.118 8 C 0.109 3.891 9 H 0.144 0.856 10 N -0.267 5.267 11 C -0.006 4.006 12 C -0.052 4.052 13 C 0.214 3.786 14 N -0.705 5.705 15 C 0.521 3.479 16 O -0.563 6.563 17 C 0.064 3.936 18 C -0.170 4.170 19 O -0.309 6.309 20 C 0.121 3.879 21 C -0.158 4.158 22 C -0.078 4.078 23 C -0.158 4.158 24 C -0.074 4.074 25 O -0.549 6.549 26 Si 0.760 3.240 27 C -0.057 4.057 28 C -0.209 4.209 29 N -0.288 5.288 30 N -0.107 5.107 31 C -0.107 4.107 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.235 0.765 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.415 0.585 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.147 0.853 47 H 0.127 0.873 48 H 0.385 0.615 49 H -0.303 1.303 50 H -0.285 1.285 51 H 0.139 0.861 52 H 0.152 0.848 53 H 0.129 0.871 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 -2.059 2.135 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.131 4.131 6 H 0.166 0.834 7 C -0.157 4.157 8 C 0.007 3.993 9 H 0.162 0.838 10 N -0.059 5.059 11 C -0.159 4.159 12 C -0.191 4.191 13 C 0.089 3.911 14 N -0.359 5.359 15 C 0.307 3.693 16 O -0.440 6.440 17 C 0.005 3.995 18 C -0.228 4.228 19 O -0.223 6.223 20 C 0.076 3.924 21 C -0.177 4.177 22 C -0.096 4.096 23 C -0.159 4.159 24 C -0.183 4.183 25 O -0.357 6.357 26 Si 0.666 3.334 27 C -0.075 4.075 28 C -0.227 4.227 29 N -0.154 5.154 30 N -0.085 5.085 31 C -0.145 4.145 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.252 0.748 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.154 0.846 46 H 0.164 0.836 47 H 0.145 0.855 48 H 0.234 0.766 49 H -0.232 1.232 50 H -0.212 1.212 51 H 0.157 0.843 52 H 0.170 0.830 53 H 0.147 0.853 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.266 -1.290 2.115 8.629 hybrid contribution -0.194 0.696 0.253 0.766 sum -8.460 -0.594 2.368 8.805 Atomic orbital electron populations 1.23529 0.75005 1.05624 1.02450 1.86509 1.24678 1.32922 1.83385 1.23863 0.92297 0.81112 0.71184 1.90705 1.67853 1.37517 1.46479 1.22849 0.86614 1.00868 1.02768 0.83382 1.23346 0.95777 0.95708 1.00840 1.22756 0.79848 0.99931 0.96730 0.83839 1.47326 1.12523 1.08755 1.37292 1.23978 0.99735 0.90784 1.01382 1.21881 0.94569 0.95103 1.07562 1.19334 1.00094 0.93467 0.78167 1.45711 1.56221 1.27542 1.06416 1.20399 0.78407 0.81871 0.88610 1.90764 1.41295 1.34484 1.77488 1.22383 0.95036 0.92824 0.89277 1.22352 0.90993 1.04832 1.04593 1.86183 1.69855 1.42348 1.23864 1.19260 0.94586 0.95117 0.83435 1.20585 1.00671 1.01049 0.95386 1.21011 0.98477 0.96737 0.93332 1.20253 1.01796 0.96514 0.97289 1.25086 1.00193 0.97331 0.95703 1.86563 1.37617 1.38471 1.73086 0.94126 0.81691 0.82055 0.75519 1.20996 0.94554 0.98427 0.93493 1.21519 1.05968 0.98523 0.96678 1.75140 1.23158 1.03623 1.13501 1.78409 0.91489 1.21250 1.17401 1.23420 0.95524 1.00030 0.95509 0.91897 0.92223 0.85408 0.89729 0.86113 0.74913 0.91222 0.87521 0.74784 0.86380 0.87543 0.89690 0.91393 0.84601 0.83622 0.85528 0.76581 1.23174 1.21218 0.84343 0.83022 0.85263 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.16 10.56 113.37 1.20 1.03 16 2 O -0.36 1.45 10.57 -51.36 -0.54 0.91 16 3 C 0.47 -1.67 7.48 71.24 0.53 -1.14 16 4 O -0.54 -2.00 15.66 21.98 0.34 -1.66 16 5 C -0.11 1.22 3.84 -11.01 -0.04 1.17 16 6 H 0.15 -2.18 7.01 -2.39 -0.02 -2.20 16 7 C -0.12 1.05 7.20 31.12 0.22 1.27 16 8 C 0.11 -1.11 5.11 45.58 0.23 -0.87 16 9 H 0.14 -1.61 8.14 -2.38 -0.02 -1.63 16 10 N -0.27 1.30 3.52 -324.38 -1.14 0.16 16 11 C -0.01 0.05 9.62 83.49 0.80 0.85 16 12 C -0.05 0.10 6.61 41.60 0.28 0.38 16 13 C 0.21 -0.44 6.23 85.63 0.53 0.09 16 14 N -0.70 2.36 5.51 -466.78 -2.57 -0.22 16 15 C 0.52 1.54 7.18 87.66 0.63 2.17 16 16 O -0.56 -7.42 16.51 15.96 0.26 -7.16 16 17 C 0.06 -0.07 2.64 29.85 0.08 0.01 16 18 C -0.17 1.16 9.13 71.99 0.66 1.82 16 19 O -0.31 -1.90 9.34 -73.49 -0.69 -2.58 16 20 C 0.12 0.46 6.60 22.51 0.15 0.61 16 21 C -0.16 -0.54 9.99 22.37 0.22 -0.32 16 22 C -0.08 -0.04 8.66 22.26 0.19 0.15 16 23 C -0.16 -0.04 5.35 -19.85 -0.11 -0.15 16 24 C -0.07 0.05 2.80 71.23 0.20 0.25 16 25 O -0.55 -1.48 12.83 -148.98 -1.91 -3.39 16 26 Si 0.76 -0.97 29.88 68.60 2.05 1.08 16 27 C -0.06 0.00 9.68 22.25 0.22 0.22 16 28 C -0.21 0.06 8.24 22.36 0.18 0.25 16 29 N -0.29 -1.59 12.41 -48.60 -0.60 -2.19 16 30 N -0.11 -0.42 13.17 37.02 0.49 0.07 16 31 C -0.11 1.53 6.89 31.18 0.21 1.74 16 32 H 0.06 -0.34 8.13 -2.39 -0.02 -0.36 16 33 H 0.06 -0.28 8.13 -2.39 -0.02 -0.30 16 34 H 0.13 -1.41 8.14 -2.39 -0.02 -1.43 16 35 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.12 -0.89 7.45 -2.39 -0.02 -0.90 16 37 H 0.23 -4.00 6.75 -2.91 -0.02 -4.02 16 38 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.42 -3.45 8.25 -92.70 -0.76 -4.21 16 41 H 0.12 -0.63 6.31 -2.39 -0.02 -0.64 16 42 H 0.11 -1.35 7.92 -2.39 -0.02 -1.37 16 43 H 0.08 -0.63 6.91 -2.39 -0.02 -0.65 16 44 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.15 -0.43 4.83 -2.91 -0.01 -0.44 16 47 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 48 H 0.39 -0.89 8.70 -74.06 -0.64 -1.53 16 49 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 50 H -0.29 -0.81 7.00 99.48 0.70 -0.12 16 51 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 52 H 0.15 -0.83 5.43 -2.91 -0.02 -0.85 16 53 H 0.13 -1.97 8.09 -2.39 -0.02 -1.99 16 54 H 0.12 -2.11 6.97 -2.38 -0.02 -2.13 16 Total: 0.00 -34.77 451.13 1.68 -33.08 By element: Atomic # 1 Polarization: -27.24 SS G_CDS: -0.40 Total: -27.64 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.39 Total: 9.54 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -3.83 Total: -2.18 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -2.53 Total: -13.88 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.05 Total: 1.08 kcal Total: -34.77 1.68 -33.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16723000_10157680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.652 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds