Wall clock time and date at job start Tue Mar 9 2021 12:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99824 * 2 1 4 4 O 1.20824 * 119.99990 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99914 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.84883 * 311.19658 * 5 3 2 7 7 C 1.54053 * 113.61881 * 82.50498 * 5 3 2 8 8 C 1.53777 * 86.98563 * 139.97747 * 7 5 3 9 9 H 1.08997 * 113.61343 * 219.98246 * 8 7 5 10 10 N 1.46502 * 113.61341 * 89.16403 * 8 7 5 11 11 C 1.35316 * 125.86870 * 345.85605 * 10 8 7 12 12 C 1.35352 * 106.17433 * 180.02562 * 11 10 8 13 13 C 1.50700 * 126.74876 * 180.02562 * 12 11 10 14 14 N 1.46507 * 109.46768 * 95.00279 * 13 12 11 15 15 C 1.34776 * 119.99696 * 180.02562 * 14 13 12 16 16 O 1.21624 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.47260 * 119.99828 * 180.02562 * 15 14 13 18 18 C 1.36774 * 126.94303 * 359.97377 * 17 15 14 19 19 N 1.34657 * 108.39462 * 180.02562 * 18 17 15 20 20 C 1.46504 * 124.84590 * 179.97438 * 19 18 17 21 21 C 1.36445 * 110.30293 * 359.97438 * 19 18 17 22 22 C 1.50699 * 125.57486 * 180.02562 * 21 19 18 23 23 O 1.42907 * 109.46603 * 30.00272 * 22 21 19 24 24 Si 1.86298 * 109.47032 * 149.99575 * 22 21 19 25 25 C 1.34486 * 108.85443 * 0.26315 * 21 19 18 26 26 N 1.33767 * 106.49478 * 0.26603 * 12 11 10 27 27 N 1.28630 * 108.88937 * 359.56282 * 26 12 11 28 28 C 1.53782 * 87.17483 * 334.57141 * 8 7 5 29 29 H 1.08999 * 109.47182 * 59.99980 * 1 2 3 30 30 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46916 * 300.00244 * 1 2 3 32 32 H 1.09003 * 113.60977 * 25.46880 * 7 5 3 33 33 H 1.08997 * 113.69630 * 254.49523 * 7 5 3 34 34 H 1.08004 * 126.90908 * 0.06838 * 11 10 8 35 35 H 1.09004 * 109.47191 * 335.00538 * 13 12 11 36 36 H 1.08990 * 109.46938 * 215.00394 * 13 12 11 37 37 H 0.96999 * 119.99991 * 0.02562 * 14 13 12 38 38 H 1.07996 * 125.80109 * 0.02562 * 18 17 15 39 39 H 1.08997 * 109.46851 * 270.01794 * 20 19 18 40 40 H 1.08994 * 109.47116 * 30.02298 * 20 19 18 41 41 H 1.09003 * 109.46970 * 150.02113 * 20 19 18 42 42 H 1.08996 * 109.47117 * 270.00185 * 22 21 19 43 43 H 0.96697 * 114.00527 * 59.99993 * 23 22 21 44 44 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 45 45 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 46 46 H 1.07997 * 126.83678 * 179.73316 * 25 21 19 47 47 H 1.08992 * 113.61824 * 140.02451 * 28 8 7 48 48 H 1.09003 * 113.61184 * 270.84544 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1929 1.1231 -1.3986 8 6 5.1814 2.2267 -0.9866 9 1 5.3978 2.9386 -1.7831 10 7 6.3906 1.7179 -0.3344 11 6 6.5620 0.4673 0.1531 12 6 7.8145 0.4306 0.6650 13 6 8.4842 -0.7465 1.3260 14 7 9.2872 -1.4701 0.3371 15 6 9.9801 -2.5664 0.7037 16 8 9.9392 -2.9547 1.8556 17 6 10.7877 -3.2935 -0.2902 18 6 10.9352 -2.9845 -1.6144 19 7 11.7536 -3.8953 -2.1746 20 6 12.1556 -3.9050 -3.5834 21 6 12.1551 -4.8076 -1.2429 22 6 13.0744 -5.9743 -1.4975 23 8 13.9835 -5.6435 -2.5494 24 14 14.0326 -6.3597 0.0529 25 6 11.5920 -4.4987 -0.0613 26 7 8.3389 1.6462 0.4734 27 7 7.4722 2.3838 -0.1261 28 6 4.1078 2.7143 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.5258 1.4149 -2.2097 33 1 4.6643 0.1545 -1.5647 34 1 5.8441 -0.3394 0.1365 35 1 7.7255 -1.4131 1.7361 36 1 9.1298 -0.3929 2.1298 37 1 9.3200 -1.1602 -0.5815 38 1 10.4736 -2.1517 -2.1240 39 1 11.4442 -4.4961 -4.1601 40 1 12.1720 -2.8837 -3.9636 41 1 13.1498 -4.3427 -3.6745 42 1 12.4854 -6.8446 -1.7866 43 1 14.5413 -4.8766 -2.3606 44 1 13.0975 -6.6743 1.1629 45 1 14.9435 -7.5082 -0.1852 46 1 11.7101 -5.0308 0.8710 47 1 4.5104 3.0294 0.9631 48 1 3.4183 3.4415 -0.4285 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16723000_13287730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:20 Heat of formation + Delta-G solvation = 41.706927 kcal Electronic energy + Delta-G solvation = -33279.351493 eV Core-core repulsion = 28534.145923 eV Total energy + Delta-G solvation = -4745.205570 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -44.52140 -42.44198 -41.92006 -40.24006 -39.77225 -37.78472 -37.52395 -36.20631 -34.09024 -33.72033 -32.59526 -31.32141 -29.64036 -28.42658 -27.49932 -27.23138 -26.88495 -26.00500 -24.34822 -23.59998 -22.53020 -22.19393 -21.10977 -20.69697 -20.51527 -19.17970 -19.01152 -18.11051 -17.81230 -17.62809 -17.38929 -17.25809 -16.95067 -16.76199 -16.57373 -16.23521 -15.80869 -15.65841 -15.53004 -15.39207 -15.16996 -14.90701 -14.67764 -14.40348 -14.23806 -14.03503 -13.92385 -13.78673 -13.65827 -13.43750 -13.36062 -13.23666 -12.99692 -12.93549 -12.67924 -12.23094 -12.13107 -12.05885 -11.98346 -11.87966 -11.85604 -11.52250 -11.24288 -11.03615 -10.67491 -10.35636 -10.17507 -9.55255 -9.20190 -4.96163 0.47027 0.75257 1.00588 1.05076 1.17324 1.22827 1.41113 1.65576 1.65805 1.91596 2.09575 2.45558 2.56914 2.76988 3.04802 3.17661 3.29341 3.31447 3.57564 3.61621 3.69993 3.90766 3.94024 3.97259 4.00667 4.15350 4.19839 4.25392 4.28622 4.32857 4.42212 4.44492 4.48170 4.50322 4.52457 4.60342 4.65677 4.70082 4.71509 4.84166 4.87358 4.90401 4.96709 4.99623 5.01182 5.30831 5.37559 5.56798 5.64679 5.98349 6.25361 6.59599 6.59878 6.61505 7.31869 7.39746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.117 4.117 6 H 0.144 0.856 7 C -0.104 4.104 8 C 0.111 3.889 9 H 0.149 0.851 10 N -0.267 5.267 11 C -0.009 4.009 12 C -0.049 4.049 13 C 0.215 3.785 14 N -0.711 5.711 15 C 0.592 3.408 16 O -0.592 6.592 17 C -0.258 4.258 18 C 0.074 3.926 19 N -0.421 5.421 20 C 0.045 3.955 21 C -0.015 4.015 22 C -0.033 4.033 23 O -0.545 6.545 24 Si 0.784 3.216 25 C -0.165 4.165 26 N -0.286 5.286 27 N -0.105 5.105 28 C -0.121 4.121 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.410 0.590 38 H 0.204 0.796 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.398 0.602 44 H -0.297 1.297 45 H -0.285 1.285 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -0.667 -9.007 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.135 4.135 6 H 0.162 0.838 7 C -0.142 4.142 8 C 0.010 3.990 9 H 0.166 0.834 10 N -0.060 5.060 11 C -0.162 4.162 12 C -0.188 4.188 13 C 0.089 3.911 14 N -0.363 5.363 15 C 0.382 3.618 16 O -0.474 6.474 17 C -0.268 4.268 18 C -0.064 4.064 19 N -0.094 5.094 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.144 4.144 23 O -0.353 6.353 24 Si 0.689 3.311 25 C -0.189 4.189 26 N -0.153 5.153 27 N -0.084 5.084 28 C -0.160 4.160 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.248 0.752 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.221 0.779 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.249 0.751 44 H -0.224 1.224 45 H -0.212 1.212 46 H 0.152 0.848 47 H 0.098 0.902 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.077 -0.366 -8.414 8.675 hybrid contribution -1.649 -0.622 -0.026 1.763 sum -3.726 -0.988 -8.441 9.279 Atomic orbital electron populations 1.23533 0.74979 1.05628 1.02481 1.86511 1.24727 1.32945 1.83392 1.23848 0.92268 0.81112 0.71169 1.90699 1.67823 1.37487 1.46504 1.22922 0.86703 1.01009 1.02903 0.83819 1.23429 0.95493 1.00211 0.95038 1.22707 0.79796 0.99784 0.96705 0.83385 1.47322 1.12205 1.08817 1.37611 1.23935 1.00002 0.90553 1.01689 1.21890 0.94470 0.94988 1.07434 1.19267 0.94279 0.87757 0.89755 1.45640 1.49048 1.27826 1.13793 1.17602 0.77998 0.79426 0.86751 1.90764 1.66065 1.68896 1.21664 1.20248 1.10083 1.02333 0.94117 1.22348 0.95610 0.96074 0.92322 1.43714 1.35060 1.20640 1.10019 1.22791 1.04694 1.05636 0.76329 1.20760 1.05472 0.97231 0.88980 1.24681 0.92450 0.95103 1.02192 1.86423 1.52867 1.54407 1.41607 0.93194 0.80665 0.84357 0.72880 1.21728 1.01807 0.98053 0.97336 1.75130 1.23701 1.03043 1.13411 1.78386 0.91351 1.21337 1.17295 1.23368 0.96057 0.95771 1.00769 0.91716 0.85415 0.92324 0.85042 0.86161 0.75228 0.88231 0.91393 0.75371 0.77925 0.90626 0.87697 0.86310 0.86675 0.75142 1.22392 1.21173 0.84839 0.90169 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.12 10.56 113.37 1.20 1.07 16 2 O -0.36 0.78 10.57 -51.42 -0.54 0.24 16 3 C 0.47 -0.77 7.49 71.24 0.53 -0.24 16 4 O -0.54 -2.87 15.65 21.97 0.34 -2.52 16 5 C -0.12 1.01 3.83 -10.92 -0.04 0.96 16 6 H 0.14 -1.64 6.88 -2.39 -0.02 -1.66 16 7 C -0.10 1.39 6.90 31.21 0.22 1.60 16 8 C 0.11 -1.03 5.10 45.52 0.23 -0.80 16 9 H 0.15 -1.65 8.14 -2.39 -0.02 -1.67 16 10 N -0.27 0.94 3.52 -324.66 -1.14 -0.20 16 11 C -0.01 0.06 9.61 83.49 0.80 0.86 16 12 C -0.05 -0.02 6.61 41.60 0.28 0.26 16 13 C 0.21 0.29 6.23 85.63 0.53 0.82 16 14 N -0.71 -0.73 5.54 -470.26 -2.60 -3.33 16 15 C 0.59 4.83 7.81 86.62 0.68 5.51 16 16 O -0.59 -10.29 16.97 -4.11 -0.07 -10.36 16 17 C -0.26 -1.25 6.29 -19.04 -0.12 -1.37 16 18 C 0.07 -0.20 10.83 83.92 0.91 0.71 16 19 N -0.42 1.34 3.09 -533.24 -1.65 -0.31 16 20 C 0.05 -0.42 10.71 127.77 1.37 0.95 16 21 C -0.01 -0.01 6.13 40.98 0.25 0.24 16 22 C -0.03 0.07 2.98 71.24 0.21 0.29 16 23 O -0.54 2.89 9.95 -148.98 -1.48 1.40 16 24 Si 0.78 -0.78 31.30 68.60 2.15 1.36 16 25 C -0.16 -1.01 9.49 23.62 0.22 -0.78 16 26 N -0.29 -2.01 12.41 -48.60 -0.60 -2.61 16 27 N -0.11 -0.52 13.16 37.02 0.49 -0.04 16 28 C -0.12 0.84 7.20 31.12 0.22 1.06 16 29 H 0.06 -0.28 8.13 -2.39 -0.02 -0.30 16 30 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 31 H 0.06 -0.18 8.13 -2.39 -0.02 -0.20 16 32 H 0.13 -1.95 8.10 -2.39 -0.02 -1.97 16 33 H 0.12 -2.03 7.06 -2.39 -0.02 -2.04 16 34 H 0.23 -3.33 6.70 -2.91 -0.02 -3.35 16 35 H 0.10 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.41 -1.71 7.41 -92.71 -0.69 -2.39 16 38 H 0.20 -2.15 7.45 -2.91 -0.02 -2.17 16 39 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.10 -1.41 8.13 -2.39 -0.02 -1.42 16 41 H 0.12 -1.18 4.93 -2.39 -0.01 -1.19 16 42 H 0.12 -0.16 7.96 -2.39 -0.02 -0.18 16 43 H 0.40 -4.99 8.38 -74.06 -0.62 -5.61 16 44 H -0.30 -1.96 6.77 99.48 0.67 -1.29 16 45 H -0.28 -1.25 7.11 99.48 0.71 -0.54 16 46 H 0.13 1.19 6.68 -2.91 -0.02 1.17 16 47 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.12 -0.73 7.44 -2.39 -0.02 -0.74 16 Total: 0.00 -34.91 406.06 2.12 -32.79 By element: Atomic # 1 Polarization: -27.31 SS G_CDS: -0.26 Total: -27.58 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 7.49 Total: 11.15 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -5.51 Total: -6.49 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.75 Total: -11.24 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.15 Total: 1.36 kcal Total: -34.91 2.12 -32.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16723000_13287730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.500 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds