Wall clock time and date at job start Tue Mar 9 2021 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99675 * 2 1 4 4 O 1.20821 * 120.00056 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99815 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84923 * 311.19469 * 5 3 2 7 7 C 1.53962 * 113.66451 * 82.43806 * 5 3 2 8 8 C 1.53786 * 87.01719 * 139.93336 * 7 5 3 9 9 H 1.09002 * 113.61357 * 220.04719 * 8 7 5 10 10 N 1.46497 * 113.61643 * 89.22773 * 8 7 5 11 11 C 1.35320 * 125.86824 * 345.86626 * 10 8 7 12 12 C 1.35348 * 106.17582 * 179.97438 * 11 10 8 13 13 C 1.50695 * 126.75338 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.47184 * 94.99881 * 13 12 11 15 15 C 1.34777 * 119.99997 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99897 * 180.02562 * 15 14 13 18 18 N 1.46496 * 109.47070 * 180.02562 * 17 15 14 19 19 C 1.36834 * 125.05998 * 265.02436 * 18 17 15 20 20 C 1.34239 * 109.94023 * 179.97438 * 19 18 17 21 21 C 1.50696 * 126.50258 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47002 * 254.96599 * 21 20 19 23 23 Si 1.86299 * 109.47330 * 14.96915 * 21 20 19 24 24 C 1.46496 * 106.99690 * 359.97438 * 20 19 18 25 25 C 1.39593 * 134.04022 * 180.02562 * 24 20 19 26 26 C 1.36660 * 119.76511 * 179.97438 * 25 24 20 27 27 C 1.38788 * 120.52843 * 359.97438 * 26 25 24 28 28 C 1.37785 * 120.66839 * 0.02562 * 27 26 25 29 29 C 1.37690 * 125.06493 * 84.71652 * 18 17 15 30 30 N 1.33772 * 106.49851 * 359.97438 * 12 11 10 31 31 N 1.28640 * 108.88327 * 359.73564 * 30 12 11 32 32 C 1.53781 * 87.17350 * 334.63802 * 8 7 5 33 33 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46981 * 299.99806 * 1 2 3 35 35 H 1.08997 * 109.47334 * 60.00477 * 1 2 3 36 36 H 1.08993 * 113.61598 * 25.41318 * 7 5 3 37 37 H 1.09000 * 113.66569 * 254.45673 * 7 5 3 38 38 H 1.07999 * 126.90834 * 0.02562 * 11 10 8 39 39 H 1.08999 * 109.47402 * 214.99850 * 13 12 11 40 40 H 1.09000 * 109.47122 * 335.00441 * 13 12 11 41 41 H 0.97003 * 120.00027 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46733 * 299.99778 * 17 15 14 43 43 H 1.09000 * 109.46927 * 59.99840 * 17 15 14 44 44 H 1.07998 * 125.03489 * 359.96022 * 19 18 17 45 45 H 1.09000 * 109.47130 * 134.97231 * 21 20 19 46 46 H 0.96707 * 113.99325 * 59.99950 * 22 21 20 47 47 H 1.48498 * 110.00008 * 180.02562 * 23 21 20 48 48 H 1.48499 * 109.99818 * 301.32322 * 23 21 20 49 49 H 1.08004 * 120.11313 * 359.95591 * 25 24 20 50 50 H 1.08000 * 119.73656 * 180.02562 * 26 25 24 51 51 H 1.07997 * 119.66409 * 179.97438 * 27 26 25 52 52 H 1.07998 * 120.11569 * 179.97438 * 28 27 26 53 53 H 1.09001 * 113.61695 * 139.93969 * 32 8 7 54 54 H 1.08996 * 113.61580 * 270.76247 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1937 1.1217 -1.3970 8 6 5.1814 2.2267 -0.9866 9 1 5.3967 2.9380 -1.7840 10 7 6.3912 1.7198 -0.3344 11 6 6.5641 0.4698 0.1543 12 6 7.8172 0.4345 0.6647 13 6 8.4886 -0.7413 1.3262 14 7 9.2908 -1.4655 0.3371 15 6 9.9850 -2.5609 0.7041 16 8 9.9459 -2.9468 1.8533 17 6 10.8107 -3.3055 -0.3132 18 7 11.4623 -4.4494 0.3296 19 6 12.7335 -4.4473 0.8361 20 6 13.0216 -5.6515 1.3546 21 6 14.3166 -6.0593 2.0086 22 8 15.0579 -6.8949 1.1172 23 14 15.3156 -4.5389 2.4099 24 6 11.8380 -6.4936 1.1654 25 6 11.5268 -7.8163 1.4854 26 6 10.2977 -8.3206 1.1652 27 6 9.3555 -7.5281 0.5245 28 6 9.6416 -6.2200 0.1995 29 6 10.8848 -5.6848 0.5195 30 7 8.3429 1.6484 0.4655 31 7 7.4749 2.3847 -0.1339 32 6 4.1077 2.7143 0.0004 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3634 0.5137 -0.8900 36 1 3.5270 1.4116 -2.2091 37 1 4.6657 0.1530 -1.5609 38 1 5.8468 -0.3374 0.1392 39 1 9.1350 -0.3864 2.1288 40 1 7.7308 -1.4080 1.7378 41 1 9.3224 -1.1566 -0.5819 42 1 10.1646 -3.6600 -1.1163 43 1 11.5688 -2.6387 -0.7241 44 1 13.4057 -3.6021 0.8207 45 1 14.1034 -6.6067 2.9267 46 1 15.2832 -6.4716 0.2774 47 1 16.5955 -4.9276 3.0547 48 1 15.5857 -3.7670 1.1703 49 1 12.2550 -8.4388 1.9840 50 1 10.0573 -9.3438 1.4133 51 1 8.3887 -7.9410 0.2776 52 1 8.9019 -5.6114 -0.2994 53 1 4.5103 3.0295 0.9631 54 1 3.4182 3.4415 -0.4285 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16723000_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:14 Heat of formation + Delta-G solvation = 60.411019 kcal Electronic energy + Delta-G solvation = -39925.212003 eV Core-core repulsion = 34640.601463 eV Total energy + Delta-G solvation = -5284.610540 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.178 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -44.52960 -42.49648 -41.92259 -40.57357 -39.79354 -38.12398 -37.70981 -37.52236 -36.28636 -34.20205 -33.96642 -32.56963 -31.38777 -30.20520 -29.68141 -29.27839 -27.75181 -27.37661 -26.90831 -25.54475 -24.35839 -23.70850 -22.81474 -22.48112 -22.20159 -21.64448 -20.76410 -20.61217 -19.13302 -18.77864 -18.47620 -18.07856 -17.81021 -17.73718 -17.58890 -17.38304 -17.18183 -16.50405 -16.49037 -16.36560 -16.14699 -15.89652 -15.69312 -15.47715 -15.34130 -15.18169 -14.79420 -14.70353 -14.51437 -14.30617 -14.26635 -14.07132 -13.96899 -13.84218 -13.66988 -13.54932 -13.41266 -13.09037 -12.94448 -12.69981 -12.68334 -12.53012 -12.37545 -12.23579 -11.99605 -11.96840 -11.88165 -11.85599 -11.71256 -11.52530 -11.28608 -11.06712 -10.55897 -10.43497 -10.34791 -10.19845 -9.11880 -8.59818 -4.85261 0.18299 0.46085 0.68220 1.00807 1.13170 1.20552 1.36526 1.50752 1.52688 1.59628 1.65683 1.73487 1.98035 2.38006 2.76131 2.99903 3.04459 3.16774 3.28691 3.55687 3.61010 3.64338 3.69183 3.71078 3.78740 3.87216 3.93489 3.99227 4.07234 4.14802 4.18131 4.19270 4.25971 4.26048 4.29124 4.34447 4.45241 4.48048 4.53099 4.59444 4.62137 4.63012 4.70517 4.71199 4.75543 4.82816 4.85868 4.89699 4.93597 4.99271 5.18079 5.26886 5.31233 5.55359 5.55661 5.70849 5.77916 5.79141 6.20853 6.27526 6.46902 6.60074 6.61437 7.13177 7.38930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.115 4.115 6 H 0.145 0.855 7 C -0.103 4.103 8 C 0.111 3.889 9 H 0.147 0.853 10 N -0.267 5.267 11 C -0.010 4.010 12 C -0.050 4.050 13 C 0.216 3.784 14 N -0.708 5.708 15 C 0.497 3.503 16 O -0.563 6.563 17 C 0.088 3.912 18 N -0.465 5.465 19 C 0.073 3.927 20 C -0.215 4.215 21 C -0.048 4.048 22 O -0.553 6.553 23 Si 0.761 3.239 24 C -0.116 4.116 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.106 4.106 28 C -0.131 4.131 29 C 0.093 3.907 30 N -0.286 5.286 31 N -0.108 5.108 32 C -0.122 4.122 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.232 0.768 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.416 0.584 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.194 0.806 45 H 0.105 0.895 46 H 0.383 0.617 47 H -0.301 1.301 48 H -0.262 1.262 49 H 0.117 0.883 50 H 0.135 0.865 51 H 0.147 0.853 52 H 0.137 0.863 53 H 0.079 0.921 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 1.331 -7.004 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.134 4.134 6 H 0.163 0.837 7 C -0.141 4.141 8 C 0.010 3.990 9 H 0.165 0.835 10 N -0.060 5.060 11 C -0.162 4.162 12 C -0.189 4.189 13 C 0.090 3.910 14 N -0.362 5.362 15 C 0.282 3.718 16 O -0.441 6.441 17 C -0.036 4.036 18 N -0.148 5.148 19 C -0.053 4.053 20 C -0.223 4.223 21 C -0.157 4.157 22 O -0.361 6.361 23 Si 0.665 3.335 24 C -0.120 4.120 25 C -0.107 4.107 26 C -0.173 4.173 27 C -0.125 4.125 28 C -0.152 4.152 29 C -0.012 4.012 30 N -0.153 5.153 31 N -0.086 5.086 32 C -0.160 4.160 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.253 0.747 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.211 0.789 45 H 0.122 0.878 46 H 0.232 0.768 47 H -0.229 1.229 48 H -0.187 1.187 49 H 0.135 0.865 50 H 0.153 0.847 51 H 0.165 0.835 52 H 0.155 0.845 53 H 0.098 0.902 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.442 3.047 -6.173 9.428 hybrid contribution -0.690 -1.051 -0.810 1.495 sum -7.132 1.996 -6.983 10.179 Atomic orbital electron populations 1.23534 0.74986 1.05656 1.02449 1.86508 1.24707 1.32906 1.83388 1.23861 0.92299 0.81122 0.71178 1.90702 1.67843 1.37528 1.46494 1.22898 0.86666 1.00924 1.02925 0.83711 1.23410 0.95453 1.00201 0.95043 1.22703 0.79812 0.99843 0.96682 0.83535 1.47323 1.12075 1.08975 1.37595 1.23970 1.00087 0.90506 1.01629 1.21931 0.94437 0.95107 1.07467 1.19258 0.94314 0.87691 0.89691 1.45805 1.48533 1.27693 1.14157 1.21290 0.80037 0.80802 0.89632 1.90821 1.64083 1.67558 1.21601 1.21945 0.99739 0.87754 0.94191 1.43421 1.11733 1.08790 1.50828 1.21985 0.86473 0.98828 0.97995 1.20691 0.96792 0.94244 1.10543 1.24533 0.91743 1.05043 0.94372 1.86564 1.74688 1.43160 1.31664 0.94055 0.78442 0.77673 0.83363 1.19322 0.94530 0.94666 1.03516 1.20439 0.97225 0.93576 0.99488 1.20918 0.93730 1.01030 1.01624 1.21138 1.00126 0.93040 0.98215 1.20268 0.93938 0.96426 1.04549 1.18411 0.95464 0.85620 1.01738 1.75135 1.23728 1.03143 1.13277 1.78409 0.91248 1.21446 1.17500 1.23368 0.96081 0.95844 1.00755 0.85355 0.92357 0.91765 0.85154 0.86001 0.75164 0.91268 0.88231 0.74725 0.83606 0.82629 0.78941 0.87753 0.76770 1.22927 1.18734 0.86524 0.84694 0.83527 0.84470 0.90178 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.15 10.56 113.37 1.20 1.05 16 2 O -0.36 1.24 10.57 -51.45 -0.54 0.70 16 3 C 0.47 -1.34 7.49 71.24 0.53 -0.81 16 4 O -0.54 -2.36 15.65 21.98 0.34 -2.01 16 5 C -0.12 1.17 3.83 -10.95 -0.04 1.13 16 6 H 0.15 -1.92 6.88 -2.39 -0.02 -1.94 16 7 C -0.10 1.53 6.90 31.18 0.22 1.75 16 8 C 0.11 -1.18 5.10 45.52 0.23 -0.95 16 9 H 0.15 -1.79 8.14 -2.39 -0.02 -1.81 16 10 N -0.27 1.48 3.52 -324.66 -1.14 0.33 16 11 C -0.01 0.08 9.61 83.49 0.80 0.89 16 12 C -0.05 0.17 6.61 41.59 0.28 0.44 16 13 C 0.22 -0.87 6.23 85.63 0.53 -0.34 16 14 N -0.71 4.94 5.55 -466.78 -2.59 2.35 16 15 C 0.50 -1.17 7.90 87.66 0.69 -0.48 16 16 O -0.56 -4.70 16.42 -3.05 -0.05 -4.75 16 17 C 0.09 -0.67 6.48 85.63 0.55 -0.11 16 18 N -0.47 -0.53 2.27 -519.99 -1.18 -1.71 16 19 C 0.07 0.11 9.89 83.00 0.82 0.93 16 20 C -0.22 -1.23 5.58 -18.63 -0.10 -1.34 16 21 C -0.05 -0.22 3.06 71.23 0.22 0.00 16 22 O -0.55 -3.82 12.88 -148.98 -1.92 -5.74 16 23 Si 0.76 0.38 30.82 68.60 2.11 2.50 16 24 C -0.12 -1.07 6.35 -20.20 -0.13 -1.20 16 25 C -0.09 -0.79 10.05 22.23 0.22 -0.56 16 26 C -0.15 -0.86 9.97 22.03 0.22 -0.64 16 27 C -0.11 -0.34 10.01 22.29 0.22 -0.12 16 28 C -0.13 -0.43 10.00 22.37 0.22 -0.21 16 29 C 0.09 0.56 6.80 39.03 0.27 0.83 16 30 N -0.29 -1.20 12.41 -48.61 -0.60 -1.80 16 31 N -0.11 -0.32 13.17 37.02 0.49 0.16 16 32 C -0.12 0.99 7.20 31.12 0.22 1.21 16 33 H 0.13 -1.37 8.14 -2.38 -0.02 -1.39 16 34 H 0.06 -0.23 8.13 -2.38 -0.02 -0.25 16 35 H 0.06 -0.33 8.13 -2.39 -0.02 -0.35 16 36 H 0.13 -2.09 8.10 -2.39 -0.02 -2.11 16 37 H 0.12 -2.29 7.05 -2.39 -0.02 -2.31 16 38 H 0.23 -4.04 6.70 -2.91 -0.02 -4.05 16 39 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.42 -4.93 8.46 -92.71 -0.78 -5.71 16 42 H 0.15 -1.91 8.14 -2.39 -0.02 -1.93 16 43 H 0.16 -2.20 8.12 -2.39 -0.02 -2.22 16 44 H 0.19 -0.89 6.27 -2.91 -0.02 -0.91 16 45 H 0.10 0.56 7.96 -2.39 -0.02 0.54 16 46 H 0.38 0.13 8.70 -74.05 -0.64 -0.51 16 47 H -0.30 -2.44 7.11 99.48 0.71 -1.73 16 48 H -0.26 -0.21 7.00 99.48 0.70 0.49 16 49 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 50 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 51 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 52 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 53 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 54 H 0.12 -0.83 7.44 -2.39 -0.02 -0.85 16 Total: 0.00 -37.79 460.00 1.67 -36.12 By element: Atomic # 1 Polarization: -27.20 SS G_CDS: -0.42 Total: -27.62 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 7.18 Total: 1.47 kcal Atomic # 7 Polarization: 4.37 SS G_CDS: -5.03 Total: -0.66 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -2.17 Total: -11.81 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.11 Total: 2.50 kcal Total: -37.79 1.67 -36.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16723000_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.531 kcal (2) G-P(sol) polarization free energy of solvation -37.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds