Wall clock time and date at job start Tue Mar 9 2021 13:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 125.56516 * 2 1 4 4 C 1.50699 * 126.06525 * 359.97078 * 3 2 1 5 5 O 1.42901 * 109.47586 * 128.47416 * 4 3 2 6 6 Si 1.86303 * 109.47075 * 248.47268 * 4 3 2 7 7 H 1.48506 * 109.46956 * 65.24524 * 6 4 3 8 8 H 1.48500 * 109.47320 * 185.24384 * 6 4 3 9 9 H 1.48498 * 109.47258 * 305.24573 * 6 4 3 10 10 C 1.39834 * 107.86883 * 179.97438 * 3 2 1 11 11 C 1.50701 * 126.45648 * 179.97438 * 10 3 2 12 12 C 1.37890 * 107.08414 * 0.02562 * 10 3 2 13 13 C 1.46643 * 126.23672 * 179.97438 * 12 10 3 14 14 O 1.21705 * 119.99545 * 0.02562 * 13 12 10 15 15 N 1.34777 * 120.00076 * 179.97438 * 13 12 10 16 16 C 1.39861 * 119.99804 * 185.16816 * 15 13 12 17 17 C 1.39266 * 120.49296 * 31.74352 * 16 15 13 18 18 C 1.38538 * 118.35998 * 179.97438 * 17 16 15 19 19 C 1.38227 * 119.24005 * 359.97438 * 18 17 16 20 20 Si 1.86803 * 119.53722 * 179.97438 * 19 18 17 21 21 C 1.86310 * 109.47046 * 90.00464 * 20 19 18 22 22 C 1.86295 * 109.47528 * 210.00427 * 20 19 18 23 23 C 1.86305 * 109.47245 * 330.00762 * 20 19 18 24 24 N 1.31886 * 120.93058 * 0.02562 * 19 18 17 25 25 C 1.31786 * 121.79383 * 359.72545 * 24 19 18 26 26 N 1.35548 * 125.55878 * 179.69869 * 2 1 3 27 27 H 1.09006 * 109.47511 * 84.61157 * 1 2 3 28 28 H 1.09001 * 109.47208 * 324.61674 * 1 2 3 29 29 H 1.09000 * 109.47535 * 204.61145 * 1 2 3 30 30 H 1.09001 * 109.47267 * 8.46954 * 4 3 2 31 31 H 0.96699 * 113.99905 * 59.99112 * 5 4 3 32 32 H 1.09001 * 109.46939 * 87.74157 * 11 10 3 33 33 H 1.09000 * 109.46518 * 207.73882 * 11 10 3 34 34 H 1.08996 * 109.47031 * 327.74203 * 11 10 3 35 35 H 0.97000 * 120.00237 * 5.17554 * 15 13 12 36 36 H 1.07997 * 120.81650 * 359.97438 * 17 16 15 37 37 H 1.08004 * 120.37860 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46496 * 60.00061 * 21 20 19 39 39 H 1.08989 * 109.46979 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46962 * 300.00334 * 21 20 19 41 41 H 1.09005 * 109.47175 * 59.99925 * 22 20 19 42 42 H 1.09002 * 109.47370 * 180.02562 * 22 20 19 43 43 H 1.08997 * 109.47006 * 300.00333 * 22 20 19 44 44 H 1.08998 * 109.47111 * 59.99452 * 23 20 19 45 45 H 1.09002 * 109.47100 * 179.97438 * 23 20 19 46 46 H 1.09005 * 109.46698 * 299.99610 * 23 20 19 47 47 H 1.08001 * 119.67413 * 180.26707 * 25 24 19 48 48 H 0.96994 * 125.67987 * 0.03213 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5320 -0.0006 5 8 2.4648 3.2487 1.0542 6 14 2.2366 3.3240 -1.6346 7 1 1.4673 2.6595 -2.7172 8 1 1.8840 4.7659 -1.5901 9 1 3.6905 3.1779 -1.8991 10 6 3.6270 0.6768 0.0006 11 6 4.8486 1.5593 0.0003 12 6 3.6123 -0.7020 0.0004 13 6 4.7857 -1.5815 0.0003 14 8 5.9047 -1.1029 0.0009 15 7 4.6250 -2.9196 0.0006 16 6 5.7394 -3.7577 0.1096 17 6 6.8560 -3.3573 0.8392 18 6 7.9351 -4.2225 0.9185 19 6 7.8689 -5.4451 0.2769 20 14 9.3194 -6.6179 0.3779 21 6 9.1167 -7.7303 1.8587 22 6 9.3912 -7.6517 -1.1702 23 6 10.8971 -5.6413 0.5463 24 7 6.7965 -5.7949 -0.4064 25 6 5.7465 -5.0043 -0.5033 26 7 2.2953 -1.1027 0.0058 27 1 -0.3634 0.0965 -1.0231 28 1 -0.3634 0.8379 0.5951 29 1 -0.3634 -0.9343 0.4280 30 1 0.7407 2.5566 0.1503 31 1 3.4291 3.2681 0.9843 32 1 5.1191 1.8056 1.0271 33 1 5.6758 1.0344 -0.4775 34 1 4.6342 2.4761 -0.5489 35 1 3.7365 -3.3014 -0.0750 36 1 6.8801 -2.3961 1.3309 37 1 8.8176 -3.9453 1.4761 38 1 8.1936 -8.3016 1.7601 39 1 9.9628 -8.4148 1.9173 40 1 9.0747 -7.1254 2.7644 41 1 9.5098 -7.0009 -2.0365 42 1 10.2373 -8.3363 -1.1110 43 1 8.4682 -8.2230 -1.2686 44 1 10.8551 -5.0365 1.4520 45 1 11.7434 -6.3257 0.6056 46 1 11.0157 -4.9905 -0.3201 47 1 4.8845 -5.3271 -1.0683 48 1 1.9833 -2.0211 0.0102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16733946_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:48 Heat of formation + Delta-G solvation = -42.509329 kcal Electronic energy + Delta-G solvation = -27799.802012 eV Core-core repulsion = 23978.255414 eV Total energy + Delta-G solvation = -3821.546598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.86691 -41.53149 -39.85958 -37.81955 -36.28207 -33.83363 -33.33981 -32.95303 -30.96447 -29.48851 -29.43328 -28.42590 -28.33218 -27.56918 -26.46856 -24.73597 -24.06806 -22.32415 -20.96500 -20.47460 -19.67632 -18.53215 -17.85805 -17.52307 -17.19729 -16.83272 -16.28531 -16.03409 -15.78772 -15.40069 -15.17527 -14.89351 -14.80063 -14.48447 -14.24657 -14.21084 -14.15286 -14.05613 -13.85515 -13.82881 -13.80662 -13.52367 -13.46121 -13.34546 -13.23596 -13.18049 -13.02792 -12.75659 -12.51017 -12.09300 -12.07815 -11.64931 -11.52246 -11.16447 -10.93180 -10.84558 -10.64759 -10.55145 -10.11734 -9.60150 -9.37503 -9.04509 -0.13437 0.32528 0.44405 1.07206 1.44383 1.50569 1.56618 1.66845 1.75277 1.85422 1.91990 1.93823 2.03908 2.19616 2.53932 2.95274 3.47410 3.56638 3.61773 3.72020 3.87531 3.92316 3.95094 4.11300 4.23829 4.32594 4.33388 4.42277 4.46434 4.62192 4.71490 4.73702 4.74328 4.76383 4.78049 4.80675 4.82527 4.87704 4.91062 4.91692 5.05175 5.10609 5.19548 5.29180 5.47421 5.55357 5.56328 5.67066 5.75726 5.78635 6.07185 6.23354 6.59701 6.85720 7.04441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.086 3.914 3 C -0.210 4.210 4 C -0.040 4.040 5 O -0.540 6.540 6 Si 0.936 3.064 7 H -0.252 1.252 8 H -0.250 1.250 9 H -0.242 1.242 10 C -0.049 4.049 11 C -0.115 4.115 12 C -0.066 4.066 13 C 0.593 3.407 14 O -0.504 6.504 15 N -0.673 5.673 16 C 0.105 3.895 17 C -0.088 4.088 18 C -0.129 4.129 19 C -0.179 4.179 20 Si 1.103 2.897 21 C -0.450 4.450 22 C -0.443 4.443 23 C -0.454 4.454 24 N -0.428 5.428 25 C 0.058 3.942 26 N -0.537 5.537 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.373 0.627 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.152 0.848 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -1.762 0.325 3.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.032 4.032 3 C -0.216 4.216 4 C -0.151 4.151 5 O -0.346 6.346 6 Si 0.758 3.242 7 H -0.176 1.176 8 H -0.174 1.174 9 H -0.166 1.166 10 C -0.058 4.058 11 C -0.171 4.171 12 C -0.177 4.177 13 C 0.383 3.617 14 O -0.378 6.378 15 N -0.317 5.317 16 C 0.009 3.991 17 C -0.116 4.116 18 C -0.149 4.149 19 C -0.356 4.356 20 Si 1.290 2.710 21 C -0.558 4.558 22 C -0.552 4.552 23 C -0.562 4.562 24 N -0.136 5.136 25 C -0.103 4.103 26 N -0.135 5.135 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.221 0.779 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.170 0.830 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.784 -1.805 -0.680 3.387 hybrid contribution -0.608 -0.023 0.589 0.846 sum -3.392 -1.828 -0.091 3.854 Atomic orbital electron populations 1.20558 0.87036 1.04211 1.03834 1.20310 0.93719 0.85327 1.03841 1.19542 0.92492 0.95350 1.14242 1.24255 1.00496 0.89064 1.01289 1.86507 1.24210 1.74942 1.48897 0.85971 0.82086 0.80297 0.75867 1.17576 1.17355 1.16611 1.19722 0.94733 0.91003 1.00309 1.20737 0.95018 0.98359 1.02997 1.19759 0.82569 0.93727 1.21665 1.17100 0.87987 0.80645 0.75934 1.90847 1.24024 1.74571 1.48345 1.43325 1.08939 1.05774 1.73697 1.18809 0.89374 0.92503 0.98391 1.21696 0.92789 1.00795 0.96365 1.22175 0.98709 0.94593 0.99424 1.30182 1.06268 1.03107 0.96029 0.77725 0.61361 0.64161 0.67710 1.26125 1.05019 1.10260 1.14407 1.26011 1.04632 1.09301 1.15222 1.26211 1.15955 1.09222 1.04851 1.68124 0.99076 1.32323 1.14087 1.22851 0.98546 0.90693 0.98160 1.41818 1.05244 1.08471 1.57926 0.89799 0.89064 0.91008 0.86879 0.77926 0.90410 0.89293 0.91221 0.75851 0.83738 0.84369 0.90970 0.90678 0.91219 0.91293 0.91218 0.90574 0.91055 0.90488 0.90923 0.83047 0.74605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.38 10.00 36.01 0.36 0.74 16 2 C 0.09 -0.09 7.13 -81.95 -0.58 -0.67 16 3 C -0.21 -0.13 4.44 -105.02 -0.47 -0.59 16 4 C -0.04 0.00 2.85 36.01 0.10 0.11 16 5 O -0.54 -0.65 12.87 -35.23 -0.45 -1.11 16 6 Si 0.94 0.08 26.86 -169.99 -4.57 -4.48 16 7 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 8 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 9 H -0.24 -0.14 5.58 56.52 0.32 0.17 16 10 C -0.05 -0.08 5.87 -104.15 -0.61 -0.69 16 11 C -0.11 -0.13 8.17 36.01 0.29 0.17 16 12 C -0.07 -0.07 7.05 -81.98 -0.58 -0.65 16 13 C 0.59 1.27 7.56 -12.87 -0.10 1.18 16 14 O -0.50 -2.51 12.37 5.18 0.06 -2.44 16 15 N -0.67 0.07 5.35 -10.95 -0.06 0.01 16 16 C 0.11 0.20 6.33 -83.56 -0.53 -0.33 16 17 C -0.09 -0.24 8.77 -39.09 -0.34 -0.58 16 18 C -0.13 -0.19 9.32 -39.47 -0.37 -0.56 16 19 C -0.18 -0.26 5.36 -17.53 -0.09 -0.35 16 20 Si 1.10 -1.70 12.77 -169.99 -2.17 -3.87 16 21 C -0.45 0.50 8.65 101.05 0.87 1.37 16 22 C -0.44 0.14 8.65 101.05 0.87 1.02 16 23 C -0.45 0.73 8.52 101.05 0.86 1.59 16 24 N -0.43 -1.13 9.84 20.61 0.20 -0.93 16 25 C 0.06 0.09 11.12 -17.32 -0.19 -0.10 16 26 N -0.54 0.93 6.00 -5.70 -0.03 0.90 16 27 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 28 H 0.09 -0.37 7.23 -51.93 -0.38 -0.74 16 29 H 0.07 -0.36 8.14 -51.93 -0.42 -0.78 16 30 H 0.11 -0.19 6.66 -51.93 -0.35 -0.54 16 31 H 0.37 -0.37 6.28 45.56 0.29 -0.08 16 32 H 0.08 0.01 7.99 -51.93 -0.42 -0.40 16 33 H 0.09 0.24 6.36 -51.93 -0.33 -0.09 16 34 H 0.07 0.00 4.42 -51.93 -0.23 -0.23 16 35 H 0.41 -1.45 7.96 -40.82 -0.32 -1.77 16 36 H 0.14 0.46 6.40 -52.49 -0.34 0.13 16 37 H 0.14 -0.13 7.38 -52.48 -0.39 -0.52 16 38 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 43 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 44 H 0.07 -0.14 7.65 -51.93 -0.40 -0.54 16 45 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 46 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 47 H 0.15 -0.16 8.06 -52.49 -0.42 -0.58 16 48 H 0.42 -2.09 8.20 -40.82 -0.33 -2.43 16 LS Contribution 390.23 15.07 5.88 5.88 Total: 0.00 -8.85 390.23 -8.28 -17.13 By element: Atomic # 1 Polarization: -6.07 SS G_CDS: -6.65 Total: -12.72 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.50 Total: 1.63 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: 0.11 Total: -0.02 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.39 Total: -3.55 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -6.74 Total: -8.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -8.85 -8.28 -17.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -8.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds