Wall clock time and date at job start Tue Mar 9 2021 13:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 125.56516 * 2 1 4 4 C 1.50699 * 126.06525 * 359.97078 * 3 2 1 5 5 O 1.42901 * 109.47586 * 128.47416 * 4 3 2 6 6 Si 1.86303 * 109.47075 * 248.47268 * 4 3 2 7 7 H 1.48506 * 109.46956 * 65.24524 * 6 4 3 8 8 H 1.48500 * 109.47320 * 185.24384 * 6 4 3 9 9 H 1.48498 * 109.47258 * 305.24573 * 6 4 3 10 10 C 1.39834 * 107.86883 * 179.97438 * 3 2 1 11 11 C 1.50701 * 126.45648 * 179.97438 * 10 3 2 12 12 C 1.37890 * 107.08414 * 0.02562 * 10 3 2 13 13 C 1.46643 * 126.23672 * 179.97438 * 12 10 3 14 14 O 1.21705 * 119.99545 * 0.02562 * 13 12 10 15 15 N 1.34777 * 120.00076 * 179.97438 * 13 12 10 16 16 C 1.39861 * 119.99804 * 185.16816 * 15 13 12 17 17 C 1.39266 * 120.49296 * 31.74352 * 16 15 13 18 18 C 1.38538 * 118.35998 * 179.97438 * 17 16 15 19 19 C 1.38227 * 119.24005 * 359.97438 * 18 17 16 20 20 Si 1.86803 * 119.53722 * 179.97438 * 19 18 17 21 21 C 1.86310 * 109.47046 * 90.00464 * 20 19 18 22 22 C 1.86295 * 109.47528 * 210.00427 * 20 19 18 23 23 C 1.86305 * 109.47245 * 330.00762 * 20 19 18 24 24 N 1.31886 * 120.93058 * 0.02562 * 19 18 17 25 25 C 1.31786 * 121.79383 * 359.72545 * 24 19 18 26 26 N 1.35548 * 125.55878 * 179.69869 * 2 1 3 27 27 H 1.09006 * 109.47511 * 84.61157 * 1 2 3 28 28 H 1.09001 * 109.47208 * 324.61674 * 1 2 3 29 29 H 1.09000 * 109.47535 * 204.61145 * 1 2 3 30 30 H 1.09001 * 109.47267 * 8.46954 * 4 3 2 31 31 H 0.96699 * 113.99905 * 59.99112 * 5 4 3 32 32 H 1.09001 * 109.46939 * 87.74157 * 11 10 3 33 33 H 1.09000 * 109.46518 * 207.73882 * 11 10 3 34 34 H 1.08996 * 109.47031 * 327.74203 * 11 10 3 35 35 H 0.97000 * 120.00237 * 5.17554 * 15 13 12 36 36 H 1.07997 * 120.81650 * 359.97438 * 17 16 15 37 37 H 1.08004 * 120.37860 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46496 * 60.00061 * 21 20 19 39 39 H 1.08989 * 109.46979 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46962 * 300.00334 * 21 20 19 41 41 H 1.09005 * 109.47175 * 59.99925 * 22 20 19 42 42 H 1.09002 * 109.47370 * 180.02562 * 22 20 19 43 43 H 1.08997 * 109.47006 * 300.00333 * 22 20 19 44 44 H 1.08998 * 109.47111 * 59.99452 * 23 20 19 45 45 H 1.09002 * 109.47100 * 179.97438 * 23 20 19 46 46 H 1.09005 * 109.46698 * 299.99610 * 23 20 19 47 47 H 1.08001 * 119.67413 * 180.26707 * 25 24 19 48 48 H 0.96994 * 125.67987 * 0.03213 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5320 -0.0006 5 8 2.4648 3.2487 1.0542 6 14 2.2366 3.3240 -1.6346 7 1 1.4673 2.6595 -2.7172 8 1 1.8840 4.7659 -1.5901 9 1 3.6905 3.1779 -1.8991 10 6 3.6270 0.6768 0.0006 11 6 4.8486 1.5593 0.0003 12 6 3.6123 -0.7020 0.0004 13 6 4.7857 -1.5815 0.0003 14 8 5.9047 -1.1029 0.0009 15 7 4.6250 -2.9196 0.0006 16 6 5.7394 -3.7577 0.1096 17 6 6.8560 -3.3573 0.8392 18 6 7.9351 -4.2225 0.9185 19 6 7.8689 -5.4451 0.2769 20 14 9.3194 -6.6179 0.3779 21 6 9.1167 -7.7303 1.8587 22 6 9.3912 -7.6517 -1.1702 23 6 10.8971 -5.6413 0.5463 24 7 6.7965 -5.7949 -0.4064 25 6 5.7465 -5.0043 -0.5033 26 7 2.2953 -1.1027 0.0058 27 1 -0.3634 0.0965 -1.0231 28 1 -0.3634 0.8379 0.5951 29 1 -0.3634 -0.9343 0.4280 30 1 0.7407 2.5566 0.1503 31 1 3.4291 3.2681 0.9843 32 1 5.1191 1.8056 1.0271 33 1 5.6758 1.0344 -0.4775 34 1 4.6342 2.4761 -0.5489 35 1 3.7365 -3.3014 -0.0750 36 1 6.8801 -2.3961 1.3309 37 1 8.8176 -3.9453 1.4761 38 1 8.1936 -8.3016 1.7601 39 1 9.9628 -8.4148 1.9173 40 1 9.0747 -7.1254 2.7644 41 1 9.5098 -7.0009 -2.0365 42 1 10.2373 -8.3363 -1.1110 43 1 8.4682 -8.2230 -1.2686 44 1 10.8551 -5.0365 1.4520 45 1 11.7434 -6.3257 0.6056 46 1 11.0157 -4.9905 -0.3201 47 1 4.8845 -5.3271 -1.0683 48 1 1.9833 -2.0211 0.0102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16733946_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:47 Heat of formation + Delta-G solvation = -39.006567 kcal Electronic energy + Delta-G solvation = -27799.650121 eV Core-core repulsion = 23978.255414 eV Total energy + Delta-G solvation = -3821.394707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.85714 -41.60757 -39.97971 -37.83565 -36.40260 -33.81963 -33.36295 -32.96768 -31.02166 -29.39628 -29.35453 -28.30152 -28.26544 -27.56713 -26.46704 -24.83985 -24.11647 -22.37634 -20.96343 -20.49820 -19.67085 -18.60139 -17.86951 -17.59447 -17.28623 -16.85922 -16.30613 -16.08764 -15.82966 -15.40888 -15.16312 -14.91516 -14.88649 -14.49551 -14.28268 -14.20968 -14.10437 -14.05105 -13.77224 -13.75595 -13.62176 -13.50758 -13.44459 -13.18773 -13.11217 -13.09559 -12.95337 -12.65758 -12.54220 -12.20883 -12.13129 -11.74529 -11.54550 -11.27853 -10.85650 -10.76625 -10.67200 -10.65629 -10.22135 -9.61653 -9.44056 -9.02413 -0.22668 0.22850 0.36808 1.08276 1.42483 1.47968 1.59113 1.65734 1.74892 1.93069 1.98077 2.03780 2.05930 2.14896 2.60982 2.86311 3.47990 3.61488 3.71195 3.78386 3.81474 3.89611 4.00151 4.10748 4.24711 4.34458 4.44149 4.53185 4.59222 4.71917 4.74281 4.76900 4.84529 4.86351 4.88975 4.89518 4.90859 4.91838 4.94546 4.99263 5.03264 5.10341 5.14241 5.24587 5.58352 5.59891 5.65787 5.68673 5.72519 5.76648 6.11047 6.40257 6.64875 6.78120 6.94498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.098 3.902 3 C -0.230 4.230 4 C -0.036 4.036 5 O -0.555 6.555 6 Si 0.960 3.040 7 H -0.259 1.259 8 H -0.266 1.266 9 H -0.256 1.256 10 C -0.068 4.068 11 C -0.112 4.112 12 C -0.082 4.082 13 C 0.591 3.409 14 O -0.540 6.540 15 N -0.658 5.658 16 C 0.097 3.903 17 C -0.108 4.108 18 C -0.136 4.136 19 C -0.195 4.195 20 Si 1.158 2.842 21 C -0.458 4.458 22 C -0.457 4.457 23 C -0.460 4.460 24 N -0.447 5.447 25 C 0.051 3.949 26 N -0.523 5.523 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.423 0.577 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.175 0.825 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -2.616 0.637 4.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.022 4.022 3 C -0.236 4.236 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.785 3.215 7 H -0.182 1.182 8 H -0.191 1.191 9 H -0.180 1.180 10 C -0.077 4.077 11 C -0.169 4.169 12 C -0.193 4.193 13 C 0.382 3.618 14 O -0.417 6.417 15 N -0.304 5.304 16 C 0.000 4.000 17 C -0.136 4.136 18 C -0.156 4.156 19 C -0.369 4.369 20 Si 1.342 2.658 21 C -0.565 4.565 22 C -0.564 4.564 23 C -0.568 4.568 24 N -0.155 5.155 25 C -0.109 4.109 26 N -0.121 5.121 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.149 0.851 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.261 0.739 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.192 0.808 48 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.939 -2.699 -0.382 4.790 hybrid contribution -0.288 0.247 0.467 0.602 sum -4.227 -2.452 0.086 4.888 Atomic orbital electron populations 1.20717 0.84670 1.05458 1.04935 1.20785 0.95033 0.84848 1.01512 1.19662 0.92235 0.96171 1.15538 1.24274 1.01407 0.88571 1.00477 1.86473 1.24974 1.75235 1.49472 0.85629 0.80918 0.78990 0.75962 1.18248 1.19078 1.18042 1.19934 0.95369 0.91533 1.00826 1.20689 0.94533 0.98495 1.03178 1.19596 0.83295 0.93484 1.22974 1.17293 0.87860 0.81214 0.75419 1.90826 1.25403 1.75288 1.50188 1.43165 1.09425 1.04987 1.72833 1.18906 0.89733 0.92894 0.98449 1.21798 0.93915 1.00744 0.97178 1.22469 0.99106 0.94481 0.99546 1.30964 1.06930 1.03663 0.95351 0.76941 0.59915 0.62620 0.66325 1.26206 1.05026 1.10543 1.14756 1.26194 1.04563 1.09708 1.15968 1.26258 1.16112 1.09438 1.05026 1.68144 0.99727 1.32928 1.14749 1.23231 0.99136 0.90432 0.98083 1.41780 1.04120 1.09393 1.56854 0.88512 0.88474 0.89276 0.85053 0.77182 0.89952 0.91324 0.90429 0.73910 0.84924 0.82381 0.91687 0.89812 0.90961 0.92051 0.90316 0.91447 0.90371 0.89683 0.91362 0.80757 0.72715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.99 10.00 71.24 0.71 1.70 16 2 C 0.10 -0.31 7.13 41.34 0.29 -0.02 16 3 C -0.23 -0.24 4.44 -20.12 -0.09 -0.33 16 4 C -0.04 0.01 2.85 71.24 0.20 0.22 16 5 O -0.55 -1.48 12.87 -148.98 -1.92 -3.39 16 6 Si 0.96 0.68 26.86 68.60 1.84 2.53 16 7 H -0.26 -0.42 7.11 99.48 0.71 0.29 16 8 H -0.27 -0.84 7.11 99.48 0.71 -0.13 16 9 H -0.26 -0.65 5.58 99.48 0.56 -0.10 16 10 C -0.07 -0.30 5.87 -19.56 -0.11 -0.41 16 11 C -0.11 -0.47 8.17 71.24 0.58 0.11 16 12 C -0.08 -0.24 7.05 40.34 0.28 0.05 16 13 C 0.59 3.38 7.56 86.44 0.65 4.03 16 14 O -0.54 -6.72 12.37 -4.36 -0.05 -6.78 16 15 N -0.66 -0.33 5.35 -306.78 -1.64 -1.97 16 16 C 0.10 0.46 6.33 38.27 0.24 0.70 16 17 C -0.11 -0.76 8.77 22.59 0.20 -0.56 16 18 C -0.14 -0.52 9.32 22.34 0.21 -0.31 16 19 C -0.20 -0.67 5.36 84.68 0.45 -0.21 16 20 Si 1.16 -3.71 12.77 68.60 0.88 -2.84 16 21 C -0.46 1.22 8.65 113.37 0.98 2.20 16 22 C -0.46 0.17 8.65 113.37 0.98 1.15 16 23 C -0.46 1.75 8.52 113.37 0.97 2.72 16 24 N -0.45 -2.62 9.84 -88.72 -0.87 -3.50 16 25 C 0.05 0.19 11.12 84.86 0.94 1.13 16 26 N -0.52 2.19 6.00 -171.93 -1.03 1.16 16 27 H 0.10 -1.12 8.14 -2.38 -0.02 -1.14 16 28 H 0.10 -1.00 7.23 -2.39 -0.02 -1.02 16 29 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 30 H 0.13 -0.60 6.66 -2.39 -0.02 -0.62 16 31 H 0.38 -0.41 6.28 -74.06 -0.47 -0.87 16 32 H 0.08 0.19 7.99 -2.39 -0.02 0.17 16 33 H 0.07 0.57 6.36 -2.39 -0.02 0.56 16 34 H 0.08 0.13 4.42 -2.39 -0.01 0.12 16 35 H 0.42 -3.08 7.96 -92.71 -0.74 -3.82 16 36 H 0.13 1.19 6.40 -2.91 -0.02 1.17 16 37 H 0.16 -0.24 7.38 -2.91 -0.02 -0.26 16 38 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 39 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.06 0.07 7.96 -2.38 -0.02 0.05 16 42 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 43 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 44 H 0.08 -0.38 7.65 -2.39 -0.02 -0.40 16 45 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 46 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 47 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 48 H 0.43 -4.91 8.20 -92.71 -0.76 -5.67 16 Total: 0.00 -21.72 390.23 4.36 -17.36 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: -0.35 Total: -14.74 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.50 Total: 12.16 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -3.55 Total: -4.30 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.97 Total: -10.17 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.72 Total: -0.31 kcal Total: -21.72 4.36 -17.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.643 kcal (2) G-P(sol) polarization free energy of solvation -21.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds