Wall clock time and date at job start Tue Mar 9 2021 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.47156 * 2 1 4 4 C 1.86294 * 109.47368 * 240.00117 * 2 1 3 5 5 C 1.86798 * 109.47013 * 120.00008 * 2 1 3 6 6 C 1.38225 * 119.54178 * 89.99836 * 5 2 1 7 7 C 1.38548 * 119.24035 * 180.02562 * 6 5 2 8 8 C 1.39238 * 118.36186 * 359.97438 * 7 6 5 9 9 N 1.39943 * 120.49131 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00206 * 34.96118 * 9 8 7 11 11 O 1.21285 * 119.99562 * 355.32071 * 10 9 8 12 12 C 1.50700 * 120.00163 * 175.32793 * 10 9 8 13 13 O 1.42894 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.35899 * 117.00006 * 179.97438 * 13 12 10 15 15 C 1.38712 * 120.05672 * 359.72713 * 14 13 12 16 16 C 1.38171 * 119.94531 * 179.72215 * 15 14 13 17 17 C 1.38247 * 120.05293 * 0.57539 * 16 15 14 18 18 C 1.38285 * 120.11001 * 359.67703 * 17 16 15 19 19 C 1.50700 * 119.96925 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47477 * 245.02382 * 19 18 17 21 21 Si 1.86305 * 109.47258 * 5.02194 * 19 18 17 22 22 H 1.48508 * 109.46910 * 60.00102 * 21 19 18 23 23 H 1.48498 * 109.47289 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47056 * 300.00433 * 21 19 18 25 25 C 1.38117 * 120.06004 * 0.04971 * 18 17 16 26 26 C 1.38887 * 119.01879 * 0.27966 * 8 7 6 27 27 N 1.31796 * 120.66432 * 359.40194 * 26 8 7 28 28 H 1.08994 * 109.47593 * 300.00170 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00286 * 1 2 3 30 30 H 1.09004 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47376 * 299.99956 * 3 2 1 33 33 H 1.09007 * 109.46815 * 59.99571 * 3 2 1 34 34 H 1.09008 * 109.46994 * 299.99982 * 4 2 1 35 35 H 1.09003 * 109.47382 * 59.99820 * 4 2 1 36 36 H 1.08994 * 109.47134 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.38063 * 359.97438 * 6 5 2 38 38 H 1.08005 * 120.81916 * 179.97438 * 7 6 5 39 39 H 0.96999 * 120.00440 * 214.96242 * 9 8 7 40 40 H 1.08995 * 109.47496 * 59.99536 * 12 10 9 41 41 H 1.09005 * 109.46879 * 299.99476 * 12 10 9 42 42 H 1.08002 * 120.02618 * 359.97438 * 15 14 13 43 43 H 1.07995 * 119.96946 * 180.27134 * 16 15 14 44 44 H 1.07996 * 119.94076 * 179.69986 * 17 16 15 45 45 H 1.09001 * 109.47220 * 125.02220 * 19 18 17 46 46 H 0.96698 * 113.99751 * 59.99346 * 20 19 18 47 47 H 1.08001 * 120.02824 * 180.02562 * 25 18 17 48 48 H 1.08006 * 119.67241 * 179.70486 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7127 -2.2433 1.4804 7 6 3.1740 -2.8902 2.6154 8 6 3.3924 -2.1349 3.7646 9 7 3.8584 -2.7426 4.9359 10 6 4.7269 -3.7706 4.8621 11 8 5.0391 -4.2243 3.7815 12 6 5.3100 -4.3563 6.1223 13 8 6.1953 -5.4260 5.7850 14 6 6.8097 -6.0663 6.8144 15 6 6.5698 -5.6693 8.1217 16 6 7.1913 -6.3256 9.1668 17 6 8.0607 -7.3693 8.9098 18 6 8.3054 -7.7635 7.6071 19 6 9.2533 -8.9020 7.3306 20 8 10.3924 -8.4118 6.6206 21 14 9.8039 -9.6571 8.9423 22 1 8.6201 -10.1666 9.6802 23 1 10.7374 -10.7794 8.6699 24 1 10.4924 -8.6275 9.7616 25 6 7.6824 -7.1144 6.5592 26 6 3.1358 -0.7703 3.7327 27 7 2.7032 -0.1932 2.6296 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1205 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8785 -1.5208 37 1 2.5319 -2.7976 0.5713 38 1 3.3597 -3.9542 2.6091 39 1 3.5564 -2.4240 5.8008 40 1 4.5058 -4.7357 6.7526 41 1 5.8605 -3.5847 6.6607 42 1 5.8948 -4.8506 8.3227 43 1 7.0014 -6.0197 10.1850 44 1 8.5491 -7.8778 9.7278 45 1 8.7479 -9.6577 6.7293 46 1 10.8914 -7.7344 7.0972 47 1 7.8737 -7.4230 5.5420 48 1 3.2969 -0.1751 4.6195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16733946_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:55:35 Heat of formation + Delta-G solvation = -79.513522 kcal Electronic energy + Delta-G solvation = -28080.765491 eV Core-core repulsion = 24031.669468 eV Total energy + Delta-G solvation = -4049.096023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02461 -41.30007 -40.15961 -39.01049 -37.28539 -36.22279 -33.16186 -32.57053 -32.09273 -31.08905 -29.55141 -28.97601 -28.42471 -28.32998 -26.86012 -24.76319 -24.18785 -23.79139 -22.53350 -21.61940 -19.44665 -19.32604 -18.36634 -17.74158 -17.71956 -17.50267 -17.31526 -17.03276 -16.69204 -16.20285 -15.82600 -15.50461 -15.31417 -15.04227 -14.95358 -14.81834 -14.52534 -14.23912 -14.15805 -14.03944 -13.86636 -13.80742 -13.64860 -13.49936 -13.23687 -13.18025 -13.09419 -13.02650 -12.64711 -12.34274 -12.19857 -12.06229 -12.01556 -11.60550 -11.53075 -11.28033 -10.93253 -10.84518 -10.57482 -10.51272 -10.11531 -10.00628 -9.39107 -9.35270 -0.05692 0.11844 0.31572 0.37727 1.05957 1.17969 1.28465 1.39654 1.48603 1.61290 1.87485 1.91489 1.96701 2.34659 2.53834 2.58490 2.91345 3.19322 3.42785 3.56395 3.60852 3.70119 3.70786 3.77626 3.90899 3.93058 4.08450 4.10079 4.28637 4.33169 4.47001 4.59068 4.62636 4.71703 4.74439 4.76163 4.78233 4.80351 4.87943 4.89095 4.91819 5.07857 5.13992 5.20851 5.26442 5.35296 5.47595 5.54855 5.55528 5.67064 5.73875 5.97398 6.21628 6.51169 6.76673 7.02733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.102 2.898 3 C -0.443 4.443 4 C -0.455 4.455 5 C -0.177 4.177 6 C -0.131 4.131 7 C -0.087 4.087 8 C 0.099 3.901 9 N -0.667 5.667 10 C 0.516 3.484 11 O -0.491 6.491 12 C 0.044 3.956 13 O -0.288 6.288 14 C 0.128 3.872 15 C -0.206 4.206 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.080 4.080 19 C -0.083 4.083 20 O -0.536 6.536 21 Si 0.955 3.045 22 H -0.250 1.250 23 H -0.253 1.253 24 H -0.251 1.251 25 C -0.116 4.116 26 C 0.064 3.936 27 N -0.430 5.430 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.415 0.585 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.377 0.623 47 H 0.138 0.862 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 1.503 4.301 5.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.290 2.710 3 C -0.552 4.552 4 C -0.563 4.563 5 C -0.353 4.353 6 C -0.151 4.151 7 C -0.115 4.115 8 C 0.003 3.997 9 N -0.315 5.315 10 C 0.302 3.698 11 O -0.363 6.363 12 C -0.035 4.035 13 O -0.200 6.200 14 C 0.083 3.917 15 C -0.224 4.224 16 C -0.090 4.090 17 C -0.179 4.179 18 C -0.080 4.080 19 C -0.194 4.194 20 O -0.341 6.341 21 Si 0.778 3.222 22 H -0.173 1.173 23 H -0.177 1.177 24 H -0.175 1.175 25 C -0.135 4.135 26 C -0.097 4.097 27 N -0.138 5.138 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.252 0.748 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.224 0.776 47 H 0.156 0.844 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.069 1.133 3.764 4.442 hybrid contribution 0.011 -0.214 1.081 1.102 sum -2.058 0.919 4.845 5.344 Atomic orbital electron populations 1.26123 1.20253 1.04607 1.04814 0.77737 0.66526 0.65996 0.60745 1.26008 1.06296 1.18278 1.04569 1.26215 1.06705 1.08184 1.15179 1.30212 1.00705 0.97030 1.07339 1.22198 0.97951 0.96305 0.98688 1.21810 0.96030 1.01429 0.92255 1.18814 0.99821 0.93178 0.87861 1.43203 1.45166 1.34414 1.08688 1.20253 0.78742 0.79837 0.90999 1.90791 1.58072 1.58093 1.29363 1.22385 0.94821 0.91006 0.95292 1.86159 1.56943 1.45572 1.31375 1.19027 0.93458 0.92951 0.86301 1.21290 1.05399 1.03869 0.91888 1.20892 0.94763 0.94369 0.98961 1.21010 1.01410 0.99570 0.95923 1.20134 0.97722 0.97422 0.92731 1.25063 0.87835 0.97522 1.08960 1.86545 1.39770 1.60654 1.47104 0.85607 0.81161 0.80369 0.75094 1.17341 1.17727 1.17524 1.20277 0.97140 0.95556 1.00505 1.22908 0.98862 0.89707 0.98221 1.68150 1.08972 1.38401 0.98272 0.90935 0.90662 0.91212 0.91287 0.91198 0.90544 0.91054 0.90465 0.90923 0.84359 0.83558 0.74803 0.88295 0.88228 0.85207 0.85108 0.85860 0.86161 0.77590 0.84384 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.54 8.65 101.05 0.87 1.41 16 2 Si 1.10 -1.77 12.77 -169.99 -2.17 -3.94 16 3 C -0.44 0.19 8.65 101.05 0.87 1.06 16 4 C -0.45 0.71 8.52 101.05 0.86 1.57 16 5 C -0.18 -0.23 5.36 -17.53 -0.09 -0.33 16 6 C -0.13 -0.19 9.32 -39.47 -0.37 -0.56 16 7 C -0.09 -0.23 8.81 -39.10 -0.34 -0.57 16 8 C 0.10 0.13 6.32 -83.54 -0.53 -0.40 16 9 N -0.67 0.92 5.35 -9.77 -0.05 0.86 16 10 C 0.52 0.45 7.77 -10.98 -0.09 0.37 16 11 O -0.49 -2.71 13.98 -14.36 -0.20 -2.91 16 12 C 0.04 -0.08 5.22 36.01 0.19 0.11 16 13 O -0.29 -0.65 9.67 -39.33 -0.38 -1.03 16 14 C 0.13 0.18 6.69 -39.21 -0.26 -0.08 16 15 C -0.21 0.16 9.04 -39.43 -0.36 -0.20 16 16 C -0.07 0.07 10.04 -39.60 -0.40 -0.33 16 17 C -0.16 0.03 8.67 -39.56 -0.34 -0.31 16 18 C -0.08 -0.04 5.35 -104.65 -0.56 -0.60 16 19 C -0.08 0.03 2.80 36.01 0.10 0.13 16 20 O -0.54 -0.31 12.83 -35.23 -0.45 -0.77 16 21 Si 0.96 -0.82 25.14 -169.99 -4.27 -5.10 16 22 H -0.25 0.09 7.11 56.52 0.40 0.49 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 24 H -0.25 0.22 7.04 56.52 0.40 0.62 16 25 C -0.12 -0.21 9.62 -39.43 -0.38 -0.59 16 26 C 0.06 0.07 11.12 -17.33 -0.19 -0.12 16 27 N -0.43 -1.03 9.84 20.60 0.20 -0.82 16 28 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 33 H 0.08 0.02 7.96 -51.92 -0.41 -0.40 16 34 H 0.07 -0.14 7.65 -51.92 -0.40 -0.54 16 35 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.14 -0.12 7.38 -52.49 -0.39 -0.51 16 38 H 0.15 0.49 6.32 -52.48 -0.33 0.16 16 39 H 0.42 -2.24 8.83 -40.82 -0.36 -2.60 16 40 H 0.10 -0.45 7.68 -51.93 -0.40 -0.85 16 41 H 0.10 -0.43 7.65 -51.93 -0.40 -0.83 16 42 H 0.13 -0.47 6.30 -52.49 -0.33 -0.80 16 43 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 44 H 0.12 -0.18 4.86 -52.49 -0.26 -0.44 16 45 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 46 H 0.38 -1.02 8.70 45.56 0.40 -0.62 16 47 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 48 H 0.15 -0.27 8.06 -52.48 -0.42 -0.69 16 LS Contribution 403.98 15.07 6.09 6.09 Total: 0.00 -10.27 403.98 -8.50 -18.77 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: -6.25 Total: -11.73 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.01 Total: 0.57 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: 0.15 Total: 0.04 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -1.03 Total: -4.70 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: -6.44 Total: -9.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -10.27 -8.50 -18.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.739 kcal (2) G-P(sol) polarization free energy of solvation -10.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds