Wall clock time and date at job start Tue Mar 9 2021 13:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.47156 * 2 1 4 4 C 1.86294 * 109.47368 * 240.00117 * 2 1 3 5 5 C 1.86798 * 109.47013 * 120.00008 * 2 1 3 6 6 C 1.38225 * 119.54178 * 89.99836 * 5 2 1 7 7 C 1.38548 * 119.24035 * 180.02562 * 6 5 2 8 8 C 1.39238 * 118.36186 * 359.97438 * 7 6 5 9 9 N 1.39943 * 120.49131 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00206 * 34.96118 * 9 8 7 11 11 O 1.21285 * 119.99562 * 355.32071 * 10 9 8 12 12 C 1.50700 * 120.00163 * 175.32793 * 10 9 8 13 13 O 1.42894 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.35899 * 117.00006 * 179.97438 * 13 12 10 15 15 C 1.38712 * 120.05672 * 359.72713 * 14 13 12 16 16 C 1.38171 * 119.94531 * 179.72215 * 15 14 13 17 17 C 1.38247 * 120.05293 * 0.57539 * 16 15 14 18 18 C 1.38285 * 120.11001 * 359.67703 * 17 16 15 19 19 C 1.50700 * 119.96925 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47477 * 245.02382 * 19 18 17 21 21 Si 1.86305 * 109.47258 * 5.02194 * 19 18 17 22 22 H 1.48508 * 109.46910 * 60.00102 * 21 19 18 23 23 H 1.48498 * 109.47289 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47056 * 300.00433 * 21 19 18 25 25 C 1.38117 * 120.06004 * 0.04971 * 18 17 16 26 26 C 1.38887 * 119.01879 * 0.27966 * 8 7 6 27 27 N 1.31796 * 120.66432 * 359.40194 * 26 8 7 28 28 H 1.08994 * 109.47593 * 300.00170 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00286 * 1 2 3 30 30 H 1.09004 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47376 * 299.99956 * 3 2 1 33 33 H 1.09007 * 109.46815 * 59.99571 * 3 2 1 34 34 H 1.09008 * 109.46994 * 299.99982 * 4 2 1 35 35 H 1.09003 * 109.47382 * 59.99820 * 4 2 1 36 36 H 1.08994 * 109.47134 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.38063 * 359.97438 * 6 5 2 38 38 H 1.08005 * 120.81916 * 179.97438 * 7 6 5 39 39 H 0.96999 * 120.00440 * 214.96242 * 9 8 7 40 40 H 1.08995 * 109.47496 * 59.99536 * 12 10 9 41 41 H 1.09005 * 109.46879 * 299.99476 * 12 10 9 42 42 H 1.08002 * 120.02618 * 359.97438 * 15 14 13 43 43 H 1.07995 * 119.96946 * 180.27134 * 16 15 14 44 44 H 1.07996 * 119.94076 * 179.69986 * 17 16 15 45 45 H 1.09001 * 109.47220 * 125.02220 * 19 18 17 46 46 H 0.96698 * 113.99751 * 59.99346 * 20 19 18 47 47 H 1.08001 * 120.02824 * 180.02562 * 25 18 17 48 48 H 1.08006 * 119.67241 * 179.70486 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7127 -2.2433 1.4804 7 6 3.1740 -2.8902 2.6154 8 6 3.3924 -2.1349 3.7646 9 7 3.8584 -2.7426 4.9359 10 6 4.7269 -3.7706 4.8621 11 8 5.0391 -4.2243 3.7815 12 6 5.3100 -4.3563 6.1223 13 8 6.1953 -5.4260 5.7850 14 6 6.8097 -6.0663 6.8144 15 6 6.5698 -5.6693 8.1217 16 6 7.1913 -6.3256 9.1668 17 6 8.0607 -7.3693 8.9098 18 6 8.3054 -7.7635 7.6071 19 6 9.2533 -8.9020 7.3306 20 8 10.3924 -8.4118 6.6206 21 14 9.8039 -9.6571 8.9423 22 1 8.6201 -10.1666 9.6802 23 1 10.7374 -10.7794 8.6699 24 1 10.4924 -8.6275 9.7616 25 6 7.6824 -7.1144 6.5592 26 6 3.1358 -0.7703 3.7327 27 7 2.7032 -0.1932 2.6296 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1205 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8785 -1.5208 37 1 2.5319 -2.7976 0.5713 38 1 3.3597 -3.9542 2.6091 39 1 3.5564 -2.4240 5.8008 40 1 4.5058 -4.7357 6.7526 41 1 5.8605 -3.5847 6.6607 42 1 5.8948 -4.8506 8.3227 43 1 7.0014 -6.0197 10.1850 44 1 8.5491 -7.8778 9.7278 45 1 8.7479 -9.6577 6.7293 46 1 10.8914 -7.7344 7.0972 47 1 7.8737 -7.4230 5.5420 48 1 3.2969 -0.1751 4.6195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16733946_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:55:34 Heat of formation + Delta-G solvation = -76.863046 kcal Electronic energy + Delta-G solvation = -28080.650558 eV Core-core repulsion = 24031.669468 eV Total energy + Delta-G solvation = -4048.981090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05987 -41.28873 -40.21697 -39.01575 -37.26950 -36.30782 -33.24377 -32.51585 -32.07641 -31.09845 -29.45926 -28.91194 -28.30408 -28.25834 -26.82385 -24.84421 -24.22251 -23.74393 -22.53018 -21.62819 -19.40585 -19.32169 -18.37817 -17.75680 -17.69860 -17.52230 -17.27218 -17.02222 -16.70481 -16.18530 -15.84308 -15.56743 -15.31383 -14.97757 -14.95106 -14.90505 -14.45280 -14.27854 -14.10204 -14.03565 -13.77455 -13.75044 -13.57271 -13.46120 -13.10667 -13.10021 -13.02257 -12.95191 -12.63126 -12.24741 -12.15402 -12.09463 -11.98691 -11.58106 -11.52919 -11.36842 -10.85057 -10.76578 -10.67666 -10.48390 -10.19582 -9.96101 -9.42713 -9.33275 -0.12318 0.17154 0.26075 0.34115 1.11174 1.19847 1.31008 1.46436 1.53225 1.68839 1.91025 2.03658 2.07446 2.42572 2.61297 2.63079 2.85674 3.27244 3.51264 3.67010 3.70191 3.78973 3.83531 3.93484 3.96533 4.04691 4.05850 4.18664 4.28343 4.33680 4.53018 4.61577 4.64412 4.74624 4.85004 4.85944 4.89124 4.90787 4.91791 4.95163 4.95581 4.99843 5.14471 5.19280 5.31720 5.40551 5.59669 5.61867 5.66768 5.68878 5.73034 6.07983 6.29559 6.66834 6.81696 6.95466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.156 2.844 3 C -0.456 4.456 4 C -0.462 4.462 5 C -0.193 4.193 6 C -0.141 4.141 7 C -0.110 4.110 8 C 0.091 3.909 9 N -0.648 5.648 10 C 0.513 3.487 11 O -0.548 6.548 12 C 0.043 3.957 13 O -0.321 6.321 14 C 0.115 3.885 15 C -0.201 4.201 16 C -0.072 4.072 17 C -0.170 4.170 18 C -0.084 4.084 19 C -0.090 4.090 20 O -0.555 6.555 21 Si 0.996 3.004 22 H -0.253 1.253 23 H -0.278 1.278 24 H -0.245 1.245 25 C -0.143 4.143 26 C 0.059 3.941 27 N -0.450 5.450 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.436 0.564 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.389 0.611 47 H 0.118 0.882 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 2.611 6.170 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.340 2.660 3 C -0.563 4.563 4 C -0.570 4.570 5 C -0.367 4.367 6 C -0.161 4.161 7 C -0.138 4.138 8 C -0.005 4.005 9 N -0.297 5.297 10 C 0.301 3.699 11 O -0.424 6.424 12 C -0.035 4.035 13 O -0.235 6.235 14 C 0.070 3.930 15 C -0.220 4.220 16 C -0.090 4.090 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.200 4.200 20 O -0.362 6.362 21 Si 0.819 3.181 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.168 1.168 25 C -0.162 4.162 26 C -0.102 4.102 27 N -0.158 5.158 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.277 0.723 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.180 0.820 43 H 0.177 0.823 44 H 0.154 0.846 45 H 0.136 0.864 46 H 0.238 0.762 47 H 0.136 0.864 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.845 2.284 5.692 6.761 hybrid contribution 0.242 -0.537 0.493 0.768 sum -2.603 1.747 6.185 6.934 Atomic orbital electron populations 1.26197 1.20553 1.04791 1.04930 0.76963 0.65620 0.64242 0.59139 1.26176 1.05881 1.19638 1.04625 1.26280 1.06419 1.08716 1.15564 1.30944 1.00332 0.97160 1.08226 1.22465 0.97800 0.96727 0.99094 1.21896 0.97222 1.01084 0.93635 1.18919 0.99717 0.93468 0.88397 1.43063 1.44176 1.33486 1.08997 1.20855 0.78276 0.79524 0.91262 1.90773 1.60115 1.59928 1.31558 1.22665 0.95675 0.91084 0.94065 1.86107 1.57859 1.46810 1.32697 1.19171 0.93655 0.93044 0.87151 1.21629 1.05363 1.04354 0.90637 1.21294 0.93767 0.93579 1.00317 1.21250 1.01795 1.00068 0.95681 1.20206 0.97751 0.97513 0.92975 1.25242 0.87630 0.97460 1.09645 1.86503 1.40240 1.61279 1.48166 0.85036 0.80009 0.79086 0.74010 1.17715 1.20373 1.16847 1.20316 0.98804 0.97032 1.00082 1.23341 0.98173 0.89783 0.98872 1.68164 1.09647 1.39022 0.98958 0.91550 0.89808 0.91009 0.92044 0.90309 0.91306 0.90504 0.89665 0.91448 0.82716 0.85101 0.72327 0.84904 0.85003 0.81950 0.82296 0.84607 0.86368 0.76169 0.86385 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.24 8.65 113.37 0.98 2.22 16 2 Si 1.16 -3.60 12.77 68.60 0.88 -2.73 16 3 C -0.46 0.25 8.65 113.37 0.98 1.23 16 4 C -0.46 1.53 8.52 113.37 0.97 2.50 16 5 C -0.19 -0.65 5.36 84.68 0.45 -0.19 16 6 C -0.14 -0.59 9.32 22.34 0.21 -0.38 16 7 C -0.11 -0.78 8.81 22.58 0.20 -0.58 16 8 C 0.09 0.30 6.32 38.24 0.24 0.55 16 9 N -0.65 1.92 5.35 -303.20 -1.62 0.30 16 10 C 0.51 1.18 7.77 87.66 0.68 1.86 16 11 O -0.55 -7.36 13.98 15.99 0.22 -7.14 16 12 C 0.04 -0.19 5.22 71.24 0.37 0.18 16 13 O -0.32 -1.72 9.67 -73.37 -0.71 -2.43 16 14 C 0.11 0.37 6.69 22.51 0.15 0.52 16 15 C -0.20 0.67 9.04 22.37 0.20 0.87 16 16 C -0.07 0.28 10.04 22.26 0.22 0.50 16 17 C -0.17 0.21 8.67 22.28 0.19 0.40 16 18 C -0.08 -0.16 5.35 -19.88 -0.11 -0.27 16 19 C -0.09 -0.05 2.80 71.24 0.20 0.15 16 20 O -0.55 -1.49 12.83 -148.98 -1.91 -3.40 16 21 Si 1.00 -1.63 25.14 68.60 1.72 0.09 16 22 H -0.25 0.30 7.11 99.48 0.71 1.01 16 23 H -0.28 -0.64 7.11 99.48 0.71 0.06 16 24 H -0.25 0.69 7.04 99.48 0.70 1.39 16 25 C -0.14 -0.79 9.62 22.37 0.22 -0.57 16 26 C 0.06 0.13 11.12 84.85 0.94 1.07 16 27 N -0.45 -2.34 9.84 -88.74 -0.87 -3.22 16 28 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 30 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 31 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 32 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 33 H 0.07 0.07 7.96 -2.38 -0.02 0.05 16 34 H 0.08 -0.33 7.65 -2.38 -0.02 -0.34 16 35 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 36 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 37 H 0.16 -0.10 7.38 -2.91 -0.02 -0.12 16 38 H 0.13 1.28 6.32 -2.91 -0.02 1.26 16 39 H 0.44 -5.35 8.83 -92.71 -0.82 -6.17 16 40 H 0.13 -1.53 7.68 -2.39 -0.02 -1.55 16 41 H 0.13 -1.47 7.65 -2.38 -0.02 -1.49 16 42 H 0.16 -1.75 6.30 -2.91 -0.02 -1.77 16 43 H 0.16 -1.55 8.06 -2.91 -0.02 -1.57 16 44 H 0.14 -0.59 4.86 -2.91 -0.01 -0.60 16 45 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 46 H 0.39 -1.66 8.70 -74.06 -0.64 -2.31 16 47 H 0.12 0.97 8.06 -2.91 -0.02 0.94 16 48 H 0.18 -0.84 8.06 -2.91 -0.02 -0.86 16 Total: 0.00 -27.08 403.98 5.10 -21.98 By element: Atomic # 1 Polarization: -13.81 SS G_CDS: 0.28 Total: -13.53 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 7.10 Total: 10.06 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -2.50 Total: -2.92 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -2.40 Total: -12.97 kcal Atomic # 14 Polarization: -5.23 SS G_CDS: 2.60 Total: -2.63 kcal Total: -27.08 5.10 -21.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.878 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds