Wall clock time and date at job start Tue Mar 9 2021 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86295 * 109.47341 * 2 1 4 4 C 1.86299 * 109.47416 * 239.99754 * 2 1 3 5 5 C 1.86806 * 109.47119 * 119.99991 * 2 1 3 6 6 C 1.38223 * 119.54228 * 89.99480 * 5 2 1 7 7 C 1.38546 * 119.23731 * 179.97438 * 6 5 2 8 8 C 1.39231 * 118.36244 * 0.02562 * 7 6 5 9 9 N 1.39957 * 120.49001 * 179.97438 * 8 7 6 10 10 C 1.34784 * 120.00045 * 34.97103 * 9 8 7 11 11 O 1.21288 * 119.99674 * 355.04885 * 10 9 8 12 12 C 1.50689 * 120.00080 * 175.32080 * 10 9 8 13 13 N 1.46497 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.36838 * 125.06277 * 265.02371 * 13 12 10 15 15 C 1.34232 * 109.93879 * 179.97438 * 14 13 12 16 16 C 1.50704 * 126.50155 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.46864 * 104.97316 * 16 15 14 18 18 Si 1.86296 * 109.46715 * 344.97296 * 16 15 14 19 19 H 1.48502 * 109.47254 * 180.02562 * 18 16 15 20 20 H 1.48498 * 109.47300 * 300.00165 * 18 16 15 21 21 H 1.48503 * 109.47165 * 60.00066 * 18 16 15 22 22 C 1.46492 * 107.00059 * 0.02562 * 15 14 13 23 23 C 1.39592 * 134.03843 * 180.02562 * 22 15 14 24 24 C 1.36663 * 119.76201 * 179.97438 * 23 22 15 25 25 C 1.38787 * 120.53078 * 0.02562 * 24 23 22 26 26 C 1.37779 * 120.66612 * 359.97438 * 25 24 23 27 27 C 1.37696 * 125.06485 * 84.72145 * 13 12 10 28 28 C 1.38889 * 119.02345 * 0.26696 * 8 7 6 29 29 N 1.31790 * 120.65713 * 359.41437 * 28 8 7 30 30 H 1.08996 * 109.47057 * 300.00132 * 1 2 3 31 31 H 1.08995 * 109.46770 * 60.00532 * 1 2 3 32 32 H 1.09002 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47556 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46936 * 299.99904 * 3 2 1 35 35 H 1.09002 * 109.47322 * 59.99523 * 3 2 1 36 36 H 1.09002 * 109.47178 * 300.00029 * 4 2 1 37 37 H 1.09001 * 109.46945 * 60.00044 * 4 2 1 38 38 H 1.09000 * 109.47284 * 180.02562 * 4 2 1 39 39 H 1.08004 * 120.38008 * 359.97438 * 6 5 2 40 40 H 1.08005 * 120.81539 * 179.97438 * 7 6 5 41 41 H 0.96993 * 120.00262 * 214.96984 * 9 8 7 42 42 H 1.09005 * 109.46924 * 300.00015 * 12 10 9 43 43 H 1.09001 * 109.47257 * 59.99974 * 12 10 9 44 44 H 1.07997 * 125.02923 * 359.96428 * 14 13 12 45 45 H 1.08997 * 109.46724 * 224.97362 * 16 15 14 46 46 H 0.96700 * 113.99356 * 180.02562 * 17 16 15 47 47 H 1.07996 * 120.12183 * 359.97438 * 23 22 15 48 48 H 1.08000 * 119.73327 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.66246 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.11339 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.67015 * 179.71014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7128 -2.2433 1.4805 7 6 3.1751 -2.8899 2.6152 8 6 3.3935 -2.1346 3.7643 9 7 3.8596 -2.7423 4.9357 10 6 4.7282 -3.7702 4.8619 11 8 5.0367 -4.2272 3.7816 12 6 5.3114 -4.3557 6.1220 13 7 6.2201 -5.4516 5.7763 14 6 5.8775 -6.7759 5.7424 15 6 6.9408 -7.5149 5.3885 16 6 6.9799 -9.0137 5.2356 17 8 6.9947 -9.3505 3.8470 18 14 5.4740 -9.7594 6.0397 19 1 5.5127 -11.2363 5.8897 20 1 5.4586 -9.4092 7.4827 21 1 4.2502 -9.2271 5.3882 22 6 8.0559 -6.5883 5.1792 23 6 9.3921 -6.7462 4.8074 24 6 10.1995 -5.6492 4.6959 25 6 9.7018 -4.3788 4.9500 26 6 8.3862 -4.2001 5.3183 27 6 7.5447 -5.3018 5.4312 28 6 3.1361 -0.7701 3.7327 29 7 2.7026 -0.1934 2.6298 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1207 2.2703 0.8899 36 1 2.1208 -1.9060 -1.5210 37 1 2.1208 -0.3645 -2.4111 38 1 3.5741 -0.8787 -1.5208 39 1 2.5319 -2.7976 0.5714 40 1 3.3607 -3.9539 2.6088 41 1 3.5575 -2.4238 5.8006 42 1 5.8617 -3.5840 6.6604 43 1 4.5072 -4.7353 6.7524 44 1 4.8968 -7.1685 5.9672 45 1 7.8782 -9.4042 5.7139 46 1 7.0195 -10.3015 3.6733 47 1 9.7864 -7.7317 4.6085 48 1 11.2331 -5.7719 4.4078 49 1 10.3522 -3.5216 4.8573 50 1 8.0084 -3.2075 5.5143 51 1 3.2974 -0.1750 4.6194 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16733946_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:05:11 Heat of formation + Delta-G solvation = -1.534005 kcal Electronic energy + Delta-G solvation = -32104.862011 eV Core-core repulsion = 27900.413815 eV Total energy + Delta-G solvation = -4204.448196 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.158 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.58677 -41.67743 -40.10400 -37.98919 -37.58739 -36.22792 -34.27551 -33.08877 -31.76992 -30.79961 -30.19305 -29.51055 -28.80023 -28.42710 -28.33429 -25.85559 -24.71494 -24.16104 -23.52764 -22.52803 -21.66094 -20.50302 -19.34846 -18.54419 -18.33323 -17.90791 -17.68088 -17.40926 -17.06331 -16.36557 -16.25137 -15.91592 -15.81714 -15.19028 -15.04470 -14.90160 -14.71311 -14.65066 -14.50608 -14.47064 -14.21615 -14.09408 -13.87324 -13.81193 -13.61345 -13.56844 -13.46157 -13.23837 -13.18367 -13.02952 -12.68465 -12.47735 -12.40777 -12.16532 -12.07179 -11.94944 -11.61971 -11.53404 -11.37096 -10.93616 -10.84800 -10.57386 -10.46933 -10.16559 -10.11330 -9.37647 -9.04434 -8.55745 -0.05512 0.25256 0.37820 0.76272 1.17669 1.20120 1.29243 1.43208 1.49214 1.60302 1.69829 1.90176 1.91098 1.94115 1.97576 2.53314 2.91384 3.06542 3.26069 3.38417 3.64052 3.68879 3.70467 3.74755 3.84057 3.93038 4.06238 4.10092 4.30489 4.33250 4.34053 4.42449 4.62326 4.68765 4.71610 4.74279 4.75955 4.76386 4.77800 4.80663 4.87586 4.88482 4.91458 4.97218 5.07981 5.21387 5.23861 5.47378 5.55168 5.62942 5.66679 5.73484 5.78118 5.83308 5.87727 5.95929 6.22429 6.33280 6.74124 6.75840 7.02846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.102 2.898 3 C -0.443 4.443 4 C -0.455 4.455 5 C -0.177 4.177 6 C -0.132 4.132 7 C -0.087 4.087 8 C 0.098 3.902 9 N -0.668 5.668 10 C 0.489 3.511 11 O -0.491 6.491 12 C 0.096 3.904 13 N -0.468 5.468 14 C 0.063 3.937 15 C -0.150 4.150 16 C -0.044 4.044 17 O -0.544 6.544 18 Si 0.941 3.059 19 H -0.252 1.252 20 H -0.249 1.249 21 H -0.250 1.250 22 C -0.084 4.084 23 C -0.064 4.064 24 C -0.145 4.145 25 C -0.096 4.096 26 C -0.128 4.128 27 C 0.109 3.891 28 C 0.063 3.937 29 N -0.430 5.430 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.415 0.585 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.166 0.834 45 H 0.072 0.928 46 H 0.376 0.624 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.114 0.886 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 0.009 3.820 4.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.290 2.710 3 C -0.551 4.551 4 C -0.563 4.563 5 C -0.353 4.353 6 C -0.152 4.152 7 C -0.115 4.115 8 C 0.003 3.997 9 N -0.316 5.316 10 C 0.274 3.726 11 O -0.363 6.363 12 C -0.030 4.030 13 N -0.152 5.152 14 C -0.062 4.062 15 C -0.158 4.158 16 C -0.155 4.155 17 O -0.349 6.349 18 Si 0.762 3.238 19 H -0.176 1.176 20 H -0.172 1.172 21 H -0.174 1.174 22 C -0.088 4.088 23 C -0.082 4.082 24 C -0.164 4.164 25 C -0.115 4.115 26 C -0.149 4.149 27 C 0.005 3.995 28 C -0.098 4.098 29 N -0.138 5.138 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.251 0.749 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.183 0.817 45 H 0.090 0.910 46 H 0.223 0.777 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.143 0.857 50 H 0.132 0.868 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.894 0.992 3.590 4.716 hybrid contribution 0.439 -1.275 0.604 1.478 sum -2.455 -0.283 4.194 4.868 Atomic orbital electron populations 1.26119 1.20251 1.04594 1.04812 0.77743 0.66531 0.66001 0.60759 1.26005 1.06292 1.18267 1.04569 1.26216 1.06703 1.08176 1.15188 1.30201 1.00757 0.96989 1.07326 1.22195 0.97958 0.96331 0.98679 1.21783 0.96059 1.01349 0.92297 1.18839 0.99717 0.93179 0.88016 1.43391 1.45142 1.34540 1.08522 1.21317 0.78923 0.80031 0.92311 1.90828 1.58174 1.58037 1.29242 1.21535 0.95475 0.91315 0.94725 1.43132 1.07587 1.04799 1.59672 1.21469 0.98844 0.81943 1.03910 1.19462 0.92829 0.93086 1.10400 1.23965 1.09288 0.94263 0.87940 1.86588 1.97562 1.28463 1.22303 0.85893 0.77992 0.80093 0.79773 1.17595 1.17245 1.17377 1.18919 0.93988 0.91314 1.04565 1.20287 0.91360 0.99099 0.97473 1.20675 1.00067 0.92334 1.03326 1.20827 0.94259 0.97543 0.98863 1.19950 0.93424 0.95772 1.05725 1.18160 0.83446 0.95709 1.02229 1.22901 0.98936 0.89766 0.98205 1.68139 1.08958 1.38421 0.98276 0.90940 0.90651 0.91228 0.91293 0.91191 0.90544 0.91073 0.90459 0.90935 0.84447 0.83722 0.74884 0.85871 0.85538 0.81667 0.90984 0.77748 0.85884 0.85848 0.85678 0.86753 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.45 8.65 101.05 0.87 1.33 16 2 Si 1.10 -1.51 12.77 -169.99 -2.17 -3.68 16 3 C -0.44 0.10 8.65 101.05 0.87 0.98 16 4 C -0.45 0.58 8.52 101.05 0.86 1.44 16 5 C -0.18 -0.28 5.36 -17.53 -0.09 -0.37 16 6 C -0.13 -0.24 9.32 -39.47 -0.37 -0.61 16 7 C -0.09 -0.25 8.81 -39.10 -0.34 -0.60 16 8 C 0.10 0.14 6.32 -83.54 -0.53 -0.39 16 9 N -0.67 1.03 5.35 -9.77 -0.05 0.97 16 10 C 0.49 0.25 7.76 -10.99 -0.09 0.16 16 11 O -0.49 -2.66 13.89 5.55 0.08 -2.58 16 12 C 0.10 -0.23 6.48 -5.20 -0.03 -0.26 16 13 N -0.47 -0.84 2.27 -115.71 -0.26 -1.10 16 14 C 0.06 0.13 9.89 -16.73 -0.17 -0.04 16 15 C -0.15 -0.51 5.61 -102.71 -0.58 -1.08 16 16 C -0.04 -0.05 3.05 36.01 0.11 0.06 16 17 O -0.54 -1.09 12.86 -35.23 -0.45 -1.55 16 18 Si 0.94 -0.32 26.08 -169.99 -4.43 -4.75 16 19 H -0.25 0.06 7.11 56.52 0.40 0.46 16 20 H -0.25 0.02 7.11 56.52 0.40 0.43 16 21 H -0.25 -0.18 7.03 56.52 0.40 0.21 16 22 C -0.08 -0.38 6.35 -105.14 -0.67 -1.05 16 23 C -0.06 -0.23 10.05 -39.65 -0.40 -0.63 16 24 C -0.14 -0.38 9.97 -39.95 -0.40 -0.78 16 25 C -0.10 -0.23 10.01 -39.55 -0.40 -0.62 16 26 C -0.13 -0.36 10.00 -39.43 -0.39 -0.76 16 27 C 0.11 0.42 6.80 -83.98 -0.57 -0.15 16 28 C 0.06 0.08 11.12 -17.33 -0.19 -0.11 16 29 N -0.43 -1.11 9.84 20.60 0.20 -0.90 16 30 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 34 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 35 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 36 H 0.07 -0.12 7.65 -51.93 -0.40 -0.51 16 37 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 39 H 0.14 -0.05 7.38 -52.48 -0.39 -0.44 16 40 H 0.15 0.56 6.31 -52.48 -0.33 0.23 16 41 H 0.41 -2.29 8.82 -40.82 -0.36 -2.65 16 42 H 0.12 -0.59 8.14 -51.93 -0.42 -1.01 16 43 H 0.13 -0.75 8.12 -51.93 -0.42 -1.17 16 44 H 0.17 -0.10 6.29 -52.49 -0.33 -0.43 16 45 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 46 H 0.38 -1.05 8.74 45.56 0.40 -0.65 16 47 H 0.12 0.26 8.06 -52.49 -0.42 -0.16 16 48 H 0.12 0.07 8.06 -52.49 -0.42 -0.36 16 49 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 50 H 0.11 0.10 8.06 -52.49 -0.42 -0.32 16 51 H 0.15 -0.24 8.06 -52.49 -0.42 -0.66 16 LS Contribution 430.46 15.07 6.49 6.49 Total: 0.00 -12.19 430.46 -9.99 -22.18 By element: Atomic # 1 Polarization: -4.72 SS G_CDS: -6.89 Total: -11.61 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.49 Total: -3.48 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -0.11 Total: -1.03 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.38 Total: -4.13 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: -6.60 Total: -8.43 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -12.19 -9.99 -22.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.649 kcal (2) G-P(sol) polarization free energy of solvation -12.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds