Wall clock time and date at job start Tue Mar 9 2021 14:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20830 * 119.99496 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00409 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46647 * 299.99509 * 5 3 2 7 7 C 1.53002 * 109.47306 * 59.99165 * 5 3 2 8 8 C 1.52996 * 109.46972 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47165 * 300.00293 * 8 7 5 10 10 F 1.39903 * 109.47485 * 299.99877 * 9 8 7 11 11 C 1.53006 * 109.46974 * 180.02562 * 9 8 7 12 12 N 1.46498 * 109.47099 * 64.99742 * 11 9 8 13 13 C 1.34777 * 119.99649 * 180.02562 * 12 11 9 14 14 O 1.21593 * 120.00171 * 0.02562 * 13 12 11 15 15 C 1.47541 * 120.00005 * 180.02562 * 13 12 11 16 16 C 1.40132 * 120.18917 * 179.72435 * 15 13 12 17 17 O 1.35648 * 120.15732 * 359.97438 * 16 15 13 18 18 C 1.38719 * 119.69532 * 179.74638 * 16 15 13 19 19 C 1.50701 * 119.95780 * 180.25030 * 18 16 15 20 20 O 1.42902 * 109.46999 * 75.27549 * 19 18 16 21 21 Si 1.86299 * 109.47136 * 195.27674 * 19 18 16 22 22 C 1.38058 * 120.08104 * 0.52783 * 18 16 15 23 23 C 1.38539 * 120.39179 * 359.74539 * 22 18 16 24 24 C 1.50706 * 119.85059 * 180.02562 * 23 22 18 25 25 C 1.37786 * 120.30354 * 359.97438 * 23 22 18 26 26 C 1.52999 * 109.47592 * 60.00300 * 9 8 7 27 27 C 1.52997 * 109.47238 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47571 * 300.00511 * 1 2 3 30 30 H 1.08999 * 109.47130 * 60.00419 * 1 2 3 31 31 H 1.08992 * 109.46974 * 300.00616 * 7 5 3 32 32 H 1.08996 * 109.46550 * 60.00722 * 7 5 3 33 33 H 1.09000 * 109.47054 * 60.00300 * 8 7 5 34 34 H 1.09001 * 109.46997 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47001 * 185.00183 * 11 9 8 36 36 H 1.08998 * 109.47136 * 304.99640 * 11 9 8 37 37 H 0.96998 * 120.00310 * 0.02562 * 12 11 9 38 38 H 0.96701 * 113.99950 * 89.99921 * 17 16 15 39 39 H 1.09006 * 109.47055 * 315.27904 * 19 18 16 40 40 H 0.96699 * 113.99531 * 179.97438 * 20 19 18 41 41 H 1.48498 * 109.99842 * 300.00191 * 21 19 18 42 42 H 1.48508 * 109.99767 * 61.31685 * 21 19 18 43 43 H 1.08001 * 119.80205 * 179.76448 * 22 18 16 44 44 H 1.09006 * 109.46979 * 269.97712 * 24 23 22 45 45 H 1.08994 * 109.46846 * 29.97353 * 24 23 22 46 46 H 1.08994 * 109.47277 * 149.97606 * 24 23 22 47 47 H 1.08000 * 120.05274 * 180.02562 * 25 23 22 48 48 H 1.08993 * 109.47839 * 180.02562 * 26 9 8 49 49 H 1.09000 * 109.47160 * 59.99666 * 26 9 8 50 50 H 1.09001 * 109.46922 * 59.99800 * 27 5 3 51 51 H 1.09000 * 109.47140 * 299.99500 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1129 0.5814 -1.2501 8 6 5.6408 0.6610 -1.2503 9 6 6.0751 2.1281 -1.2499 10 9 5.5749 2.7628 -2.3920 11 6 7.6031 2.2077 -1.2508 12 7 8.1204 1.6506 -2.5031 13 6 9.4490 1.6152 -2.7267 14 8 10.2182 2.0452 -1.8890 15 6 9.9700 1.0547 -3.9881 16 6 11.3504 1.0212 -4.2273 17 8 12.2145 1.5046 -3.3002 18 6 11.8294 0.4871 -5.4146 19 6 13.3130 0.4430 -5.6754 20 8 13.9023 -0.6019 -4.8989 21 14 13.6160 0.1185 -7.4848 22 6 10.9483 0.0011 -6.3599 23 6 9.5827 0.0377 -6.1295 24 6 8.6320 -0.4967 -7.1696 25 6 9.0898 0.5594 -4.9534 26 6 5.5285 2.8216 -0.0004 27 6 4.0001 2.7421 -0.0011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.8039 -0.4638 -1.2501 32 1 3.7229 1.0757 -2.1398 33 1 6.0305 0.1666 -0.3605 34 1 6.0302 0.1674 -2.1407 35 1 7.9127 3.2490 -1.1609 36 1 7.9970 1.6376 -0.4094 37 1 7.5067 1.3072 -3.1712 38 1 12.5106 0.8458 -2.6571 39 1 13.7593 1.3979 -5.3978 40 1 14.8580 -0.6888 -5.0174 41 1 13.0123 -1.1807 -7.8758 42 1 13.0354 1.2146 -8.3015 43 1 11.3260 -0.4103 -7.2843 44 1 8.3542 0.3050 -7.8540 45 1 9.1164 -1.2985 -7.7268 46 1 7.7379 -0.8829 -6.6804 47 1 8.0244 0.5856 -4.7779 48 1 5.8375 3.8668 -0.0004 49 1 5.9182 2.3271 0.8894 50 1 3.6106 3.2364 0.8889 51 1 3.6101 3.2360 -0.8911 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16738318_13422088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:15:17 Heat of formation + Delta-G solvation = -223.396977 kcal Electronic energy + Delta-G solvation = -36111.502973 eV Core-core repulsion = 31084.821392 eV Total energy + Delta-G solvation = -5026.681581 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.172 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -48.86070 -41.84376 -41.74456 -40.17330 -38.90457 -38.16118 -37.60990 -37.52408 -36.01750 -33.56690 -33.21060 -32.32665 -31.89336 -29.07781 -27.73004 -27.48390 -26.80497 -25.10155 -24.07378 -23.55315 -21.96909 -21.68126 -21.53662 -20.73176 -19.67470 -18.74088 -18.65322 -18.37562 -17.92493 -17.84690 -17.68204 -17.04621 -16.84280 -16.79700 -16.42198 -16.14732 -16.07796 -15.68685 -15.20159 -15.13998 -15.04547 -14.84468 -14.79968 -14.61629 -14.52630 -14.31579 -14.13844 -13.92103 -13.78636 -13.60291 -13.29136 -13.15225 -13.10495 -13.08223 -13.04514 -12.79454 -12.68094 -12.51975 -12.17979 -12.06088 -11.96484 -11.88427 -11.81901 -11.69724 -11.32199 -11.18666 -11.00299 -10.43851 -10.32356 -10.16347 -9.64548 -4.97981 -0.50637 -0.06751 1.07227 1.23841 1.55380 1.63195 1.67937 1.86676 1.91290 2.41098 3.07157 3.14041 3.24469 3.27650 3.41247 3.45517 3.50524 3.55443 3.64141 3.79523 3.86721 3.88829 3.97230 4.04278 4.14635 4.17864 4.21911 4.25896 4.27254 4.35876 4.42713 4.43249 4.48734 4.52689 4.64863 4.66280 4.67028 4.71507 4.71765 4.82837 4.88378 4.96018 4.99933 5.03363 5.05271 5.06651 5.14715 5.16755 5.24568 5.28898 5.36063 5.50515 6.27994 6.62822 6.62893 6.84413 7.00918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.077 4.077 6 H 0.140 0.860 7 C -0.107 4.107 8 C -0.134 4.134 9 C 0.112 3.888 10 F -0.215 7.215 11 C 0.102 3.898 12 N -0.712 5.712 13 C 0.561 3.439 14 O -0.555 6.555 15 C -0.177 4.177 16 C 0.169 3.831 17 O -0.486 6.486 18 C -0.124 4.124 19 C -0.080 4.080 20 O -0.561 6.561 21 Si 0.781 3.219 22 C -0.095 4.095 23 C -0.097 4.097 24 C -0.117 4.117 25 C -0.061 4.061 26 C -0.133 4.133 27 C -0.102 4.102 28 H 0.130 0.870 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.411 0.589 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.404 0.596 41 H -0.278 1.278 42 H -0.291 1.291 43 H 0.133 0.867 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.162 0.838 48 H 0.084 0.916 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -6.726 -1.680 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.432 6.432 5 C -0.096 4.096 6 H 0.158 0.842 7 C -0.145 4.145 8 C -0.171 4.171 9 C 0.094 3.906 10 F -0.196 7.196 11 C -0.022 4.022 12 N -0.366 5.366 13 C 0.349 3.651 14 O -0.434 6.434 15 C -0.180 4.180 16 C 0.122 3.878 17 O -0.298 6.298 18 C -0.125 4.125 19 C -0.189 4.189 20 O -0.371 6.371 21 Si 0.685 3.315 22 C -0.113 4.113 23 C -0.097 4.097 24 C -0.174 4.174 25 C -0.080 4.080 26 C -0.171 4.171 27 C -0.140 4.140 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.249 0.751 38 H 0.265 0.735 39 H 0.097 0.903 40 H 0.255 0.745 41 H -0.205 1.205 42 H -0.218 1.218 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.179 0.821 48 H 0.102 0.898 49 H 0.133 0.867 50 H 0.095 0.905 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.101 -5.799 -1.956 6.121 hybrid contribution -0.939 0.274 0.341 1.036 sum -1.040 -5.526 -1.615 5.850 Atomic orbital electron populations 1.23516 0.75173 1.05628 1.02299 1.86499 1.24610 1.32978 1.83552 1.24365 0.93046 0.81007 0.70951 1.90682 1.68197 1.37606 1.46731 1.21269 0.85211 0.99399 1.03722 0.84228 1.21481 0.95421 1.02155 0.95432 1.22189 0.95468 0.93225 1.06261 1.21344 0.91334 0.94293 0.83648 1.92859 1.89024 1.84230 1.53444 1.22012 0.92149 1.00518 0.87520 1.45669 1.06314 1.63380 1.21251 1.18109 0.82530 0.78392 0.86074 1.90815 1.57616 1.47944 1.47070 1.20446 0.94010 1.06827 0.96749 1.18422 0.87629 0.92229 0.89525 1.84638 1.62262 1.39674 1.43273 1.19988 0.95940 1.01165 0.95382 1.24823 0.90080 0.94308 1.09671 1.86394 1.28536 1.53215 1.68942 0.94061 0.89415 0.76931 0.71075 1.21233 0.93779 0.97859 0.98434 1.20104 0.93856 0.99139 0.96589 1.20925 0.98193 1.01570 0.96692 1.21407 1.00292 0.94655 0.91603 1.22102 0.94777 1.02750 0.97421 1.21363 0.95400 0.93829 1.03427 0.85168 0.92152 0.92314 0.88396 0.92048 0.86924 0.89121 0.91304 0.88093 0.75062 0.73455 0.90316 0.74496 1.20476 1.21792 0.84929 0.89796 0.90840 0.88974 0.82073 0.89781 0.86683 0.90478 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.54 10.47 -51.40 -0.54 -1.08 16 3 C 0.46 1.56 7.26 71.23 0.52 2.07 16 4 O -0.54 -5.84 15.73 21.95 0.35 -5.49 16 5 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 6 H 0.14 -1.23 8.14 -2.39 -0.02 -1.25 16 7 C -0.11 0.63 5.01 30.59 0.15 0.78 16 8 C -0.13 1.13 4.87 30.59 0.15 1.28 16 9 C 0.11 -0.50 0.84 -10.79 -0.01 -0.51 16 10 F -0.21 -0.27 15.42 44.97 0.69 0.42 16 11 C 0.10 -0.18 4.85 86.38 0.42 0.23 16 12 N -0.71 0.04 5.12 -466.25 -2.39 -2.35 16 13 C 0.56 4.03 7.76 86.70 0.67 4.71 16 14 O -0.56 -8.06 15.16 16.91 0.26 -7.80 16 15 C -0.18 -1.06 5.89 -20.01 -0.12 -1.18 16 16 C 0.17 1.45 6.69 22.85 0.15 1.61 16 17 O -0.49 -4.82 10.90 -68.71 -0.75 -5.57 16 18 C -0.12 -0.78 5.30 -19.79 -0.10 -0.89 16 19 C -0.08 -0.13 2.37 71.24 0.17 0.04 16 20 O -0.56 -0.13 12.86 -148.98 -1.92 -2.05 16 21 Si 0.78 -1.60 30.19 68.60 2.07 0.47 16 22 C -0.10 -0.39 8.30 22.30 0.19 -0.20 16 23 C -0.10 -0.07 5.87 -19.90 -0.12 -0.19 16 24 C -0.12 0.57 10.00 71.24 0.71 1.29 16 25 C -0.06 -0.01 9.18 22.52 0.21 0.19 16 26 C -0.13 0.73 5.00 30.61 0.15 0.88 16 27 C -0.10 0.17 4.37 30.61 0.13 0.30 16 28 H 0.13 -0.97 8.14 -2.39 -0.02 -0.98 16 29 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 30 H 0.06 -0.03 8.13 -2.39 -0.02 -0.04 16 31 H 0.10 -0.75 8.11 -2.39 -0.02 -0.77 16 32 H 0.06 -0.14 7.80 -2.39 -0.02 -0.16 16 33 H 0.11 -1.35 8.14 -2.39 -0.02 -1.37 16 34 H 0.09 -0.89 7.18 -2.39 -0.02 -0.91 16 35 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.41 -1.88 5.49 -92.71 -0.51 -2.39 16 38 H 0.41 1.89 9.06 -74.06 -0.67 1.22 16 39 H 0.08 0.11 7.82 -2.38 -0.02 0.09 16 40 H 0.40 -4.02 8.74 -74.06 -0.65 -4.67 16 41 H -0.28 -0.69 6.74 99.48 0.67 -0.02 16 42 H -0.29 -1.16 7.11 99.48 0.71 -0.46 16 43 H 0.13 0.33 4.87 -2.91 -0.01 0.32 16 44 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 45 H 0.07 -0.37 8.08 -2.39 -0.02 -0.39 16 46 H 0.09 -0.77 8.08 -2.39 -0.02 -0.79 16 47 H 0.16 -1.09 6.40 -2.91 -0.02 -1.11 16 48 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 49 H 0.11 -1.17 8.14 -2.39 -0.02 -1.19 16 50 H 0.08 -0.04 8.10 -2.39 -0.02 -0.06 16 51 H 0.06 0.20 7.76 -2.39 -0.02 0.18 16 Total: 0.00 -29.02 415.36 1.39 -27.63 By element: Atomic # 1 Polarization: -15.16 SS G_CDS: -0.83 Total: -15.98 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 4.44 Total: 11.81 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -2.39 Total: -2.35 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -2.60 Total: -22.00 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.69 Total: 0.42 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 2.07 Total: 0.47 kcal Total: -29.02 1.39 -27.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16738318_13422088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.767 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds