Wall clock time and date at job start Tue Mar 9 2021 14:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35647 * 117.00265 * 2 1 4 4 C 1.40138 * 120.15247 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.18714 * 0.02562 * 4 3 2 6 6 O 1.21582 * 120.00388 * 359.71678 * 5 4 3 7 7 N 1.34782 * 119.99439 * 179.72641 * 5 4 3 8 8 C 1.46500 * 119.99474 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47738 * 34.99759 * 8 7 5 10 10 C 1.53002 * 109.47089 * 154.99416 * 8 7 5 11 11 C 1.52997 * 109.47415 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47164 * 300.00027 * 11 10 8 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.46814 * 300.00282 * 12 11 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 12 11 10 16 16 C 1.52996 * 109.47249 * 274.99290 * 8 7 5 17 17 C 1.39711 * 119.61774 * 179.72640 * 4 3 2 18 18 C 1.37787 * 119.90829 * 0.24702 * 17 4 3 19 19 C 1.50694 * 119.85127 * 179.97438 * 18 17 4 20 20 O 1.42900 * 109.47490 * 300.00643 * 19 18 17 21 21 Si 1.86300 * 109.47365 * 180.02562 * 19 18 17 22 22 C 1.38553 * 120.29828 * 359.97438 * 18 17 4 23 23 C 1.38057 * 120.39327 * 0.02562 * 22 18 17 24 24 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47137 * 300.00131 * 1 2 3 26 26 H 1.08998 * 109.47093 * 60.00033 * 1 2 3 27 27 H 0.96992 * 120.00293 * 359.97438 * 7 5 4 28 28 H 1.09000 * 109.46986 * 59.99786 * 10 8 7 29 29 H 1.09001 * 109.47601 * 300.00509 * 10 8 7 30 30 H 1.09001 * 109.46922 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47140 * 59.99976 * 11 10 8 32 32 H 1.09001 * 109.47375 * 59.99966 * 13 12 11 33 33 H 1.09002 * 109.46777 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.47140 * 299.99948 * 13 12 11 35 35 H 1.09000 * 109.47160 * 60.00369 * 15 12 11 36 36 H 1.09002 * 109.46719 * 180.02562 * 15 12 11 37 37 H 1.09000 * 109.47054 * 300.00354 * 16 8 7 38 38 H 1.09001 * 109.46997 * 60.00087 * 16 8 7 39 39 H 1.07999 * 120.04474 * 180.23704 * 17 4 3 40 40 H 1.09009 * 109.46941 * 60.00442 * 19 18 17 41 41 H 0.96703 * 113.99876 * 300.00282 * 20 19 18 42 42 H 1.48499 * 109.99777 * 58.68663 * 21 19 18 43 43 H 1.48496 * 109.99875 * 180.02562 * 21 19 18 44 44 H 1.08001 * 119.80423 * 180.02562 * 22 18 17 45 45 H 1.08000 * 119.95859 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4441 1.2856 0.0005 5 6 4.2549 0.0530 0.0005 6 8 3.7094 -1.0335 0.0053 7 7 5.6005 0.1316 -0.0045 8 6 6.4056 -1.0923 -0.0039 9 1 5.8999 -1.8602 -0.5893 10 6 7.7758 -0.8017 -0.6195 11 6 8.6170 -2.0797 -0.6183 12 6 8.7975 -2.5702 0.8197 13 6 9.6381 -3.8485 0.8208 14 9 9.4463 -1.5841 1.5707 15 6 7.4272 -2.8608 1.4351 16 6 6.5861 -1.5834 1.4338 17 6 4.0668 2.5363 -0.0053 18 6 3.3039 3.6836 -0.0063 19 6 3.9768 5.0319 -0.0120 20 8 4.7957 5.1605 1.1520 21 14 2.6827 6.3720 -0.0113 22 6 1.9207 3.6032 -0.0022 23 6 1.2925 2.3739 0.0036 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 6.0357 0.9984 -0.0085 28 1 8.2816 -0.0338 -0.0341 29 1 7.6473 -0.4518 -1.6437 30 1 9.5933 -1.8725 -1.0564 31 1 8.1114 -2.8479 -1.2034 32 1 10.6143 -3.6419 0.3822 33 1 9.7663 -4.1982 1.8452 34 1 9.1321 -4.6166 0.2358 35 1 6.9217 -3.6290 0.8500 36 1 7.5558 -3.2098 2.4597 37 1 7.0919 -0.8155 2.0192 38 1 5.6099 -1.7904 1.8723 39 1 5.1447 2.6036 -0.0088 40 1 4.5963 5.1250 -0.9041 41 1 4.3097 5.0877 1.9848 42 1 1.8121 6.2366 1.1840 43 1 3.3336 7.7067 -0.0175 44 1 1.3304 4.5077 -0.0035 45 1 0.2138 2.3195 0.0072 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16738386_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:57 Heat of formation + Delta-G solvation = -129.758432 kcal Electronic energy + Delta-G solvation = -28302.223478 eV Core-core repulsion = 24200.730513 eV Total energy + Delta-G solvation = -4101.492965 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.68114 -41.82386 -40.47797 -39.23811 -38.66804 -37.23835 -35.45431 -33.13777 -32.02558 -31.93990 -31.54463 -28.56455 -27.26638 -26.16956 -25.04069 -24.05360 -22.96056 -22.08991 -21.48381 -20.79278 -19.51486 -18.45857 -18.17562 -17.58916 -16.98748 -16.89821 -16.77521 -16.52773 -16.16431 -16.13168 -15.99031 -15.85260 -15.75789 -14.82945 -14.72602 -14.61152 -14.52945 -14.48288 -13.83829 -13.58145 -13.55732 -13.45348 -13.25173 -13.18203 -13.10157 -12.94148 -12.64679 -12.43180 -12.23824 -12.17518 -12.05465 -11.81036 -11.68010 -11.47420 -11.15902 -10.97846 -10.56344 -10.28739 -10.04794 -9.30222 -4.90050 -0.27535 0.20451 1.32990 1.61935 1.76160 1.99248 2.05448 2.26062 2.66696 3.38391 3.39848 3.49806 3.56386 3.61261 3.67085 3.68417 3.72417 3.86193 3.97540 4.00238 4.14903 4.22480 4.26911 4.30423 4.35770 4.37153 4.39715 4.58568 4.61085 4.63072 4.67554 4.72043 4.73979 4.75182 4.91447 4.93598 4.96713 5.02701 5.07379 5.12436 5.17823 5.18923 5.26400 5.36861 5.45797 5.55674 6.29172 6.49583 6.50425 7.19103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.172 3.828 4 C -0.198 4.198 5 C 0.558 3.442 6 O -0.561 6.561 7 N -0.715 5.715 8 C 0.149 3.851 9 H 0.077 0.923 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.110 3.890 13 C -0.173 4.173 14 F -0.224 7.224 15 C -0.134 4.134 16 C -0.126 4.126 17 C -0.017 4.017 18 C -0.165 4.165 19 C -0.074 4.074 20 O -0.547 6.547 21 Si 0.763 3.237 22 C -0.042 4.042 23 C -0.212 4.212 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.409 0.591 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.148 0.852 40 H 0.131 0.869 41 H 0.386 0.614 42 H -0.281 1.281 43 H -0.306 1.306 44 H 0.158 0.842 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 2.132 -3.295 4.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.202 4.202 5 C 0.346 3.654 6 O -0.441 6.441 7 N -0.368 5.368 8 C 0.045 3.955 9 H 0.095 0.905 10 C -0.160 4.160 11 C -0.171 4.171 12 C 0.092 3.908 13 C -0.231 4.231 14 F -0.205 7.205 15 C -0.172 4.172 16 C -0.165 4.165 17 C -0.036 4.036 18 C -0.165 4.165 19 C -0.183 4.183 20 O -0.355 6.355 21 Si 0.669 3.331 22 C -0.059 4.059 23 C -0.230 4.230 24 H 0.126 0.874 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.235 0.765 42 H -0.207 1.207 43 H -0.234 1.234 44 H 0.175 0.825 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.412 1.905 -3.307 4.515 hybrid contribution 0.367 0.110 1.454 1.504 sum -2.046 2.014 -1.853 3.417 Atomic orbital electron populations 1.23450 0.76500 1.05483 1.02876 1.86333 1.23222 1.26379 1.86539 1.19406 0.91276 0.85589 0.91391 1.19425 0.91218 0.93986 1.15538 1.18298 0.82556 0.88700 0.75815 1.90799 1.72410 1.30185 1.50678 1.45903 1.05224 1.10421 1.75227 1.20968 0.91547 0.86810 0.96174 0.90531 1.21753 0.93155 0.98844 1.02298 1.22098 1.01994 0.98270 0.94747 1.21136 0.91961 0.86675 0.90981 1.22377 1.00685 0.96172 1.03833 1.92813 1.83467 1.65301 1.78911 1.22077 0.94185 0.98267 1.02675 1.21816 0.99645 0.98005 0.97042 1.21096 1.00655 0.89270 0.92584 1.20182 0.93856 0.95824 1.06686 1.25142 1.02909 0.98904 0.91382 1.86579 1.37827 1.94469 1.16673 0.94198 0.77563 0.73874 0.87501 1.21281 0.93754 0.97923 0.92990 1.21480 1.01797 0.90859 1.08912 0.87448 0.91035 0.90591 0.75317 0.90766 0.89406 0.89221 0.88509 0.90978 0.91634 0.89114 0.88942 0.90561 0.91690 0.92960 0.83444 0.85180 0.76467 1.20706 1.23402 0.82486 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.70 8.57 -68.70 -0.59 -3.29 16 3 C 0.17 0.95 6.70 22.84 0.15 1.11 16 4 C -0.20 -1.13 5.89 -20.01 -0.12 -1.25 16 5 C 0.56 5.30 7.73 86.69 0.67 5.97 16 6 O -0.56 -9.85 14.82 16.95 0.25 -9.60 16 7 N -0.72 -2.24 5.03 -445.71 -2.24 -4.49 16 8 C 0.15 0.41 2.45 44.99 0.11 0.52 16 9 H 0.08 0.47 7.58 -2.39 -0.02 0.45 16 10 C -0.12 0.20 5.27 30.59 0.16 0.36 16 11 C -0.13 0.34 5.00 30.60 0.15 0.49 16 12 C 0.11 0.04 1.23 -10.79 -0.01 0.03 16 13 C -0.17 0.40 8.93 71.98 0.64 1.04 16 14 F -0.22 -1.33 15.77 44.97 0.71 -0.62 16 15 C -0.13 -0.16 5.00 30.58 0.15 -0.01 16 16 C -0.13 -0.54 5.37 30.58 0.16 -0.37 16 17 C -0.02 0.00 9.09 22.52 0.20 0.20 16 18 C -0.16 0.41 5.39 -19.90 -0.11 0.30 16 19 C -0.07 0.29 2.81 71.23 0.20 0.49 16 20 O -0.55 0.32 12.76 -148.98 -1.90 -1.58 16 21 Si 0.76 -3.66 29.77 68.60 2.04 -1.62 16 22 C -0.04 0.16 8.66 22.30 0.19 0.35 16 23 C -0.21 0.27 9.03 22.34 0.20 0.48 16 24 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.07 -0.33 7.65 -2.39 -0.02 -0.35 16 26 H 0.08 -0.39 7.67 -2.39 -0.02 -0.41 16 27 H 0.41 -0.80 6.63 -92.71 -0.61 -1.42 16 28 H 0.07 -0.07 7.80 -2.39 -0.02 -0.09 16 29 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.08 0.11 8.14 -2.39 -0.02 0.10 16 37 H 0.06 0.34 7.80 -2.39 -0.02 0.32 16 38 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.15 -0.52 6.40 -2.91 -0.02 -0.54 16 40 H 0.13 -0.78 7.96 -2.38 -0.02 -0.80 16 41 H 0.39 -2.12 8.70 -74.06 -0.64 -2.77 16 42 H -0.28 0.34 7.11 99.48 0.71 1.05 16 43 H -0.31 -1.15 7.11 99.48 0.71 -0.44 16 44 H 0.16 -1.41 4.85 -2.91 -0.01 -1.43 16 45 H 0.16 -1.06 6.30 -2.91 -0.02 -1.08 16 Total: 0.00 -21.66 360.05 1.95 -19.71 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: -0.20 Total: -9.32 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 3.88 Total: 10.81 kcal Atomic # 7 Polarization: -2.24 SS G_CDS: -2.24 Total: -4.49 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -2.24 Total: -14.47 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.71 Total: -0.62 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.04 Total: -1.62 kcal Total: -21.66 1.95 -19.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16738386_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.051 kcal (2) G-P(sol) polarization free energy of solvation -21.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds