Wall clock time and date at job start Tue Mar 9 2021 12:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47238 * 240.00255 * 2 1 3 5 5 C 1.38893 * 119.67793 * 119.99868 * 4 2 1 6 6 C 1.36481 * 120.61713 * 180.02562 * 5 4 2 7 7 C 1.40061 * 119.82658 * 359.97438 * 6 5 4 8 8 C 1.41595 * 133.37832 * 180.32504 * 7 6 5 9 9 C 1.35862 * 107.72587 * 180.11243 * 8 7 6 10 10 C 1.47063 * 125.42500 * 179.84950 * 9 8 7 11 11 O 1.21647 * 120.00069 * 359.69430 * 10 9 8 12 12 N 1.34780 * 120.00003 * 179.69534 * 10 9 8 13 13 C 1.46492 * 119.99930 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47696 * 34.99761 * 13 12 10 15 15 C 1.53002 * 109.47204 * 155.00105 * 13 12 10 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 13 18 18 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 17 16 15 20 20 F 1.39906 * 109.47544 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 22 22 C 1.52997 * 109.47244 * 274.99857 * 13 12 10 23 23 N 1.38145 * 109.14826 * 359.57961 * 9 8 7 24 24 C 1.37489 * 108.79082 * 0.27016 * 23 9 8 25 25 C 1.37708 * 119.67393 * 300.01468 * 4 2 1 26 26 H 0.96705 * 114.00112 * 60.00253 * 1 2 3 27 27 H 1.08999 * 109.47431 * 119.99620 * 2 1 3 28 28 H 1.48499 * 110.00127 * 59.99943 * 3 2 1 29 29 H 1.48502 * 110.00112 * 181.31989 * 3 2 1 30 30 H 1.08000 * 119.69224 * 0.02562 * 5 4 2 31 31 H 1.08003 * 120.08444 * 179.97438 * 6 5 4 32 32 H 1.07999 * 126.13807 * 359.97438 * 8 7 6 33 33 H 0.96998 * 119.99716 * 359.97438 * 12 10 9 34 34 H 1.08992 * 109.47063 * 59.99836 * 15 13 12 35 35 H 1.09004 * 109.46733 * 299.99549 * 15 13 12 36 36 H 1.09002 * 109.47398 * 59.99826 * 16 15 13 37 37 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47103 * 300.00247 * 19 17 16 39 39 H 1.09001 * 109.47066 * 60.00169 * 19 17 16 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 17 16 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 17 16 42 42 H 1.09002 * 109.47153 * 300.00242 * 22 13 12 43 43 H 1.09001 * 109.47289 * 60.00326 * 22 13 12 44 44 H 0.97006 * 125.60493 * 180.23623 * 23 9 8 45 45 H 1.07999 * 120.10312 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7294 -0.0289 -2.1403 6 6 3.1944 -0.6533 -3.2612 7 6 2.8660 -1.9940 -3.4989 8 6 3.1852 -2.9045 -4.5352 9 6 2.5831 -4.0876 -4.2463 10 6 2.6562 -5.3045 -5.0688 11 8 3.2921 -5.3004 -6.1059 12 7 2.0187 -6.4244 -4.6737 13 6 2.0911 -7.6363 -5.4933 14 1 3.0743 -7.7018 -5.9593 15 6 1.8630 -8.8642 -4.6094 16 6 1.9392 -10.1301 -5.4654 17 6 0.8631 -10.0767 -6.5517 18 1 -0.1203 -10.0116 -6.0860 19 6 0.9388 -11.3428 -7.4072 20 9 -0.0456 -11.2943 -8.4002 21 6 1.0911 -8.8489 -7.4356 22 6 1.0147 -7.5827 -6.5792 23 7 1.8963 -3.9673 -3.0537 24 6 2.0571 -2.6876 -2.5773 25 6 1.5943 -2.0287 -1.4419 26 1 -0.3934 0.4417 -0.7651 27 1 1.7924 -0.5138 0.8900 28 1 1.5614 2.4679 1.2085 29 1 3.5346 1.7704 -0.0321 30 1 2.9844 1.0048 -1.9590 31 1 3.8141 -0.1150 -3.9632 32 1 3.7958 -2.6953 -5.4011 33 1 1.5120 -6.4277 -3.8465 34 1 0.8798 -8.7988 -4.1435 35 1 2.6299 -8.9025 -3.8358 36 1 2.9226 -10.1953 -5.9310 37 1 1.7762 -11.0048 -4.8357 38 1 1.9222 -11.4084 -7.8728 39 1 0.7760 -12.2173 -6.7773 40 1 0.3242 -8.8106 -8.2092 41 1 2.0745 -8.9141 -7.9012 42 1 0.0314 -7.5173 -6.1133 43 1 1.1772 -6.7080 -7.2090 44 1 1.3844 -4.6700 -2.6234 45 1 0.9733 -2.5502 -0.7286 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16769142_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:12 Heat of formation + Delta-G solvation = -71.882648 kcal Electronic energy + Delta-G solvation = -27710.387170 eV Core-core repulsion = 23608.207888 eV Total energy + Delta-G solvation = -4102.179283 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.57430 -42.73635 -41.03770 -39.41707 -38.83495 -36.88302 -35.76378 -33.30774 -32.19611 -31.83460 -30.85413 -30.41127 -27.41325 -26.19619 -24.39380 -23.85546 -23.17300 -22.29568 -21.93393 -21.42100 -20.86928 -19.54958 -18.40874 -17.88172 -17.44031 -17.00712 -16.77924 -16.64955 -16.52069 -16.46340 -16.10078 -15.69733 -15.54516 -15.36080 -15.02146 -14.88371 -14.80146 -14.71461 -14.53574 -14.36181 -14.11306 -13.50825 -13.27722 -13.21513 -13.10597 -12.61409 -12.58234 -12.51180 -12.18316 -12.03009 -11.78704 -11.66889 -11.63700 -11.51666 -11.36503 -11.13128 -10.98058 -10.43423 -10.28651 -9.34444 -8.84948 -4.94113 -0.39375 0.51325 0.92311 1.34773 1.68126 1.72268 1.92646 2.02189 2.14844 2.76102 3.41855 3.50426 3.53461 3.59949 3.67647 3.69550 3.72610 3.86636 4.00043 4.02807 4.21507 4.23536 4.24976 4.28243 4.31494 4.36883 4.42681 4.44844 4.48533 4.50051 4.61873 4.71730 4.81993 4.84023 4.86630 4.96869 5.00164 5.04098 5.10997 5.14286 5.22361 5.31197 5.33292 5.39354 5.43577 5.52360 5.56200 5.96587 6.22906 6.40834 6.79373 6.92327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.070 4.070 3 Si 0.776 3.224 4 C -0.089 4.089 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.119 4.119 9 C 0.010 3.990 10 C 0.586 3.414 11 O -0.559 6.559 12 N -0.709 5.709 13 C 0.146 3.854 14 H 0.073 0.927 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.116 4.116 18 H 0.085 0.915 19 C 0.055 3.945 20 F -0.239 7.239 21 C -0.112 4.112 22 C -0.123 4.123 23 N -0.564 5.564 24 C 0.107 3.893 25 C -0.110 4.110 26 H 0.396 0.604 27 H 0.110 0.890 28 H -0.302 1.302 29 H -0.286 1.286 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.411 0.589 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.431 0.569 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -1.280 3.153 3.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.181 4.181 3 Si 0.683 3.317 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.100 4.100 10 C 0.373 3.627 11 O -0.438 6.438 12 N -0.360 5.360 13 C 0.042 3.958 14 H 0.092 0.908 15 C -0.156 4.156 16 C -0.145 4.145 17 C -0.135 4.135 18 H 0.104 0.896 19 C 0.001 3.999 20 F -0.221 7.221 21 C -0.150 4.150 22 C -0.162 4.162 23 N -0.170 5.170 24 C -0.003 4.003 25 C -0.130 4.130 26 H 0.246 0.754 27 H 0.127 0.873 28 H -0.230 1.230 29 H -0.213 1.213 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.272 0.728 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.753 -1.211 3.365 3.654 hybrid contribution -0.346 -0.874 0.440 1.038 sum -1.100 -2.084 3.805 4.476 Atomic orbital electron populations 1.86463 1.17111 1.82152 1.50569 1.25153 0.85317 1.10690 0.96897 0.93564 0.77953 0.75510 0.84657 1.20160 0.98155 0.93832 0.96918 1.20697 1.00431 1.00537 0.94927 1.20639 0.97916 0.91821 0.97292 1.18437 1.03336 0.95653 0.96517 1.21104 1.02163 0.91158 1.00161 1.19992 1.03680 0.96216 0.90109 1.17310 0.78892 0.82364 0.84178 1.90859 1.43613 1.84112 1.25175 1.45863 1.52407 1.10904 1.26802 1.21103 0.99593 0.83474 0.91669 0.90843 1.21761 1.03919 0.92164 0.97775 1.21441 0.98529 0.98075 0.96413 1.21776 1.01453 0.93857 0.96423 0.89633 1.22313 0.89930 0.99747 0.87934 1.92731 1.66170 1.97842 1.65326 1.21508 1.02189 0.93553 0.97797 1.21845 0.99335 0.97769 0.97219 1.41778 1.45007 1.11172 1.19030 1.18449 1.00179 0.85057 0.96644 1.19984 1.02778 0.94415 0.95845 0.75417 0.87302 1.23030 1.21264 0.83601 0.83484 0.82785 0.75269 0.89632 0.89983 0.91059 0.89060 0.89841 0.88808 0.92088 0.91819 0.90750 0.93489 0.72808 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.81 12.76 -148.98 -1.90 -1.09 16 2 C -0.07 0.14 2.81 71.24 0.20 0.34 16 3 Si 0.78 -2.39 29.75 68.60 2.04 -0.35 16 4 C -0.09 0.08 5.40 -19.83 -0.11 -0.03 16 5 C -0.15 0.24 8.59 22.02 0.19 0.43 16 6 C -0.06 -0.01 10.06 22.30 0.22 0.21 16 7 C -0.13 -0.47 6.16 -21.36 -0.13 -0.60 16 8 C -0.12 -0.60 10.53 22.55 0.24 -0.36 16 9 C 0.01 0.03 6.97 39.91 0.28 0.31 16 10 C 0.59 2.71 7.76 86.56 0.67 3.38 16 11 O -0.56 -7.24 16.50 -4.18 -0.07 -7.31 16 12 N -0.71 1.91 5.07 -446.15 -2.26 -0.36 16 13 C 0.15 -0.33 2.45 44.99 0.11 -0.22 16 14 H 0.07 0.18 7.58 -2.39 -0.02 0.16 16 15 C -0.12 0.94 5.39 30.60 0.16 1.10 16 16 C -0.11 0.84 5.20 30.59 0.16 1.00 16 17 C -0.12 0.55 2.51 -10.80 -0.03 0.52 16 18 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 19 C 0.06 -0.19 6.96 71.98 0.50 0.31 16 20 F -0.24 -1.11 16.84 44.97 0.76 -0.36 16 21 C -0.11 0.10 5.08 30.61 0.16 0.25 16 22 C -0.12 0.06 5.50 30.61 0.17 0.23 16 23 N -0.56 1.03 6.07 -177.19 -1.08 -0.05 16 24 C 0.11 0.17 7.25 39.13 0.28 0.45 16 25 C -0.11 0.00 9.61 22.37 0.22 0.22 16 26 H 0.40 -3.62 8.70 -74.05 -0.64 -4.26 16 27 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 29 H -0.29 -0.48 7.11 99.48 0.71 0.22 16 30 H 0.15 -0.85 4.82 -2.91 -0.01 -0.86 16 31 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 32 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.41 -3.75 7.66 -92.71 -0.71 -4.46 16 34 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.06 0.11 7.80 -2.39 -0.02 0.09 16 41 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.43 -3.73 8.12 -92.70 -0.75 -4.48 16 45 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 Total: 0.00 -21.03 367.68 -0.24 -21.27 By element: Atomic # 1 Polarization: -18.28 SS G_CDS: -1.03 Total: -19.31 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 3.29 Total: 7.55 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -3.34 Total: -0.40 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -1.97 Total: -8.41 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.76 Total: -0.36 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.04 Total: -0.35 kcal Total: -21.03 -0.24 -21.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16769142_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.610 kcal (2) G-P(sol) polarization free energy of solvation -21.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds