Wall clock time and date at job start Tue Mar 9 2021 12:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86291 * 109.47430 * 2 1 4 4 C 1.50703 * 109.46964 * 120.00474 * 2 1 3 5 5 C 1.38575 * 120.32783 * 65.01855 * 4 2 1 6 6 C 1.38635 * 118.48771 * 179.70529 * 5 4 2 7 7 C 1.39265 * 119.05913 * 0.53545 * 6 5 4 8 8 C 1.48173 * 119.72304 * 179.73206 * 7 6 5 9 9 O 1.21515 * 119.99851 * 359.72272 * 8 7 6 10 10 N 1.34773 * 120.00051 * 179.72623 * 8 7 6 11 11 C 1.46500 * 119.99575 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.48027 * 325.00328 * 11 10 8 13 13 C 1.53006 * 109.47078 * 85.00554 * 11 10 8 14 14 C 1.52997 * 109.47269 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47482 * 299.99806 * 14 13 11 16 16 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 17 17 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 18 18 F 1.39901 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47223 * 59.99712 * 15 14 13 20 20 C 1.52997 * 109.47127 * 300.00506 * 19 15 14 21 21 N 1.32747 * 120.55530 * 359.45296 * 7 6 5 22 22 C 1.31483 * 121.64202 * 0.27557 * 21 7 6 23 23 H 0.96702 * 114.00140 * 59.99790 * 1 2 3 24 24 H 1.09004 * 109.46851 * 239.99775 * 2 1 3 25 25 H 1.48499 * 109.99914 * 59.99977 * 3 2 1 26 26 H 1.48501 * 110.00177 * 181.31842 * 3 2 1 27 27 H 1.08001 * 120.75802 * 359.95589 * 5 4 2 28 28 H 1.08001 * 120.46969 * 180.27947 * 6 5 4 29 29 H 0.96993 * 120.00252 * 359.97438 * 10 8 7 30 30 H 1.09004 * 109.46785 * 299.99565 * 13 11 10 31 31 H 1.09001 * 109.47369 * 59.99066 * 13 11 10 32 32 H 1.09002 * 109.47153 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.46832 * 59.99780 * 14 13 11 34 34 H 1.09002 * 109.47153 * 59.99783 * 17 15 14 35 35 H 1.09001 * 109.46832 * 299.99974 * 17 15 14 36 36 H 1.09001 * 109.47002 * 60.00080 * 19 15 14 37 37 H 1.08993 * 109.46955 * 180.02562 * 19 15 14 38 38 H 1.09002 * 109.47153 * 179.97438 * 20 19 15 39 39 H 1.09001 * 109.47289 * 299.99953 * 20 19 15 40 40 H 1.08006 * 119.55287 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6882 -2.0635 1.4054 6 6 2.1732 -2.6801 2.5485 7 6 2.8740 -1.9200 3.4815 8 6 3.3937 -2.5627 4.7113 9 8 3.2032 -3.7472 4.9048 10 7 4.0775 -1.8337 5.6153 11 6 4.5907 -2.4691 6.8315 12 1 3.8916 -3.2367 7.1633 13 6 5.9491 -3.1092 6.5381 14 6 6.4855 -3.7723 7.8083 15 6 6.6448 -2.7182 8.9057 16 1 7.3439 -1.9507 8.5735 17 6 7.1806 -3.3814 10.1761 18 9 7.3257 -2.4176 11.1797 19 6 5.2864 -2.0780 9.1991 20 6 4.7501 -1.4149 7.9289 21 7 3.0852 -0.6257 3.2757 22 6 2.6414 -0.0172 2.1980 23 1 -0.3933 0.4417 -0.7650 24 1 1.7923 -0.5139 -0.8900 25 1 1.5616 2.4678 1.2085 26 1 3.5346 1.7701 -0.0321 27 1 1.1372 -2.6258 0.6661 28 1 2.0062 -3.7340 2.7150 29 1 4.2298 -0.8883 5.4608 30 1 5.8357 -3.8600 5.7560 31 1 6.6484 -2.3417 6.2062 32 1 7.4530 -4.2286 7.5992 33 1 5.7863 -4.5397 8.1405 34 1 8.1482 -3.8377 9.9674 35 1 6.4811 -4.1486 10.5081 36 1 4.5873 -2.8455 9.5313 37 1 5.4001 -1.3268 9.9806 38 1 3.7822 -0.9593 8.1378 39 1 5.4492 -0.6475 7.5966 40 1 2.8329 1.0374 2.0647 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16769142_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:27 Heat of formation + Delta-G solvation = -92.763925 kcal Electronic energy + Delta-G solvation = -23333.575107 eV Core-core repulsion = 19642.480244 eV Total energy + Delta-G solvation = -3691.094863 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.58036 -42.05243 -40.79127 -39.25922 -37.79885 -35.77799 -34.08034 -33.19657 -31.93214 -31.66812 -28.10022 -26.41561 -25.19179 -23.89869 -23.79431 -22.47877 -21.73653 -21.07710 -19.36438 -18.60544 -18.26752 -17.34455 -16.99829 -16.80548 -16.71616 -16.55139 -16.42358 -16.26519 -15.51961 -15.35168 -15.20493 -14.91988 -14.63390 -14.52072 -14.35984 -14.06706 -13.97272 -13.55326 -13.27691 -13.21930 -12.53911 -12.49703 -12.19531 -12.14321 -11.96401 -11.73754 -11.50309 -11.32441 -11.29564 -11.18111 -10.89913 -10.59367 -10.28514 -10.14923 -4.96227 -0.73177 -0.08776 1.24296 1.40657 1.65573 1.83186 1.93941 2.49863 2.75961 3.23253 3.40626 3.47123 3.52761 3.56007 3.63179 3.72312 3.84055 3.87602 3.96912 4.10574 4.18862 4.21632 4.28366 4.29455 4.36366 4.41884 4.46556 4.47194 4.69517 4.73158 4.79095 4.82458 4.86860 4.97895 5.02722 5.08338 5.11697 5.22656 5.26697 5.29287 5.41167 6.13378 6.44804 6.87079 6.92114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.076 4.076 3 Si 0.772 3.228 4 C -0.109 4.109 5 C -0.049 4.049 6 C -0.111 4.111 7 C 0.059 3.941 8 C 0.571 3.429 9 O -0.560 6.560 10 N -0.698 5.698 11 C 0.142 3.858 12 H 0.076 0.924 13 C -0.123 4.123 14 C -0.105 4.105 15 C -0.117 4.117 16 H 0.084 0.916 17 C 0.058 3.942 18 F -0.236 7.236 19 C -0.111 4.111 20 C -0.118 4.118 21 N -0.463 5.463 22 C 0.082 3.918 23 H 0.409 0.591 24 H 0.109 0.891 25 H -0.292 1.292 26 H -0.284 1.284 27 H 0.174 0.826 28 H 0.158 0.842 29 H 0.416 0.584 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 2.592 -6.447 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.186 4.186 3 Si 0.678 3.322 4 C -0.111 4.111 5 C -0.074 4.074 6 C -0.132 4.132 7 C -0.079 4.079 8 C 0.356 3.644 9 O -0.439 6.439 10 N -0.348 5.348 11 C 0.039 3.961 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.143 4.143 15 C -0.136 4.136 16 H 0.102 0.898 17 C 0.003 3.997 18 F -0.218 7.218 19 C -0.149 4.149 20 C -0.156 4.156 21 N -0.174 5.174 22 C -0.078 4.078 23 H 0.261 0.739 24 H 0.127 0.873 25 H -0.219 1.219 26 H -0.211 1.211 27 H 0.191 0.809 28 H 0.176 0.824 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.466 2.502 -4.637 5.289 hybrid contribution -0.330 -0.470 -0.328 0.661 sum 0.137 2.032 -4.964 5.366 Atomic orbital electron populations 1.86435 1.16528 1.82534 1.51770 1.24747 0.86444 1.11185 0.96242 0.93989 0.77707 0.75302 0.85227 1.21032 0.97683 0.95483 0.96939 1.21845 0.95059 0.93745 0.96795 1.22389 0.94980 1.02578 0.93231 1.21203 0.99927 0.90526 0.96238 1.18002 0.77941 0.85709 0.82729 1.90779 1.59717 1.15930 1.77457 1.45937 1.54161 1.14089 1.20655 1.21164 0.95510 0.95874 0.83584 0.90617 1.21841 0.95908 1.00196 0.98263 1.21411 1.02326 0.97312 0.93220 1.21767 0.98034 0.98887 0.94878 0.89796 1.22257 1.03657 0.88966 0.84782 1.92731 1.97481 1.67512 1.64046 1.21507 0.95976 1.00533 0.96889 1.21737 1.02451 0.97376 0.94043 1.67427 1.18711 1.09642 1.21600 1.22707 0.95805 0.99882 0.89402 0.73929 0.87305 1.21925 1.21055 0.80882 0.82441 0.74657 0.92829 0.90956 0.89968 0.91110 0.89196 0.89615 0.91222 0.90937 0.90861 0.90250 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.52 12.82 -148.98 -1.91 0.61 16 2 C -0.08 0.37 2.81 71.24 0.20 0.57 16 3 Si 0.77 -4.41 29.87 68.60 2.05 -2.36 16 4 C -0.11 -0.19 5.40 -19.69 -0.11 -0.30 16 5 C -0.05 -0.06 9.83 22.45 0.22 0.16 16 6 C -0.11 -0.54 9.63 22.61 0.22 -0.32 16 7 C 0.06 0.46 6.75 41.89 0.28 0.75 16 8 C 0.57 5.38 7.78 86.88 0.68 6.05 16 9 O -0.56 -8.23 15.99 -3.76 -0.06 -8.29 16 10 N -0.70 -3.10 5.07 -445.08 -2.26 -5.36 16 11 C 0.14 0.32 2.46 45.00 0.11 0.43 16 12 H 0.08 0.44 7.58 -2.39 -0.02 0.42 16 13 C -0.12 -0.12 5.49 30.60 0.17 0.04 16 14 C -0.10 0.25 5.20 30.59 0.16 0.41 16 15 C -0.12 0.28 2.52 -10.79 -0.03 0.25 16 16 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 17 C 0.06 -0.11 6.96 71.98 0.50 0.39 16 18 F -0.24 -1.19 16.84 44.97 0.76 -0.43 16 19 C -0.11 0.15 5.08 30.60 0.16 0.31 16 20 C -0.12 0.15 5.39 30.60 0.16 0.31 16 21 N -0.46 -3.35 9.54 -184.91 -1.76 -5.12 16 22 C 0.08 0.39 9.84 84.83 0.83 1.23 16 23 H 0.41 -6.10 8.74 -74.06 -0.65 -6.75 16 24 H 0.11 -1.08 7.96 -2.39 -0.02 -1.10 16 25 H -0.29 -0.54 7.05 99.48 0.70 0.16 16 26 H -0.28 0.06 7.11 99.48 0.71 0.77 16 27 H 0.17 -0.72 8.06 -2.91 -0.02 -0.74 16 28 H 0.16 0.56 7.64 -2.91 -0.02 0.54 16 29 H 0.42 0.85 7.93 -92.71 -0.74 0.11 16 30 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.07 -0.01 7.80 -2.39 -0.02 -0.03 16 38 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.16 0.43 4.88 -2.91 -0.01 0.42 16 Total: 0.00 -18.67 331.43 0.09 -18.58 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: -0.28 Total: -7.92 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 3.56 Total: 10.29 kcal Atomic # 7 Polarization: -6.46 SS G_CDS: -4.02 Total: -10.48 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -1.97 Total: -7.67 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.76 Total: -0.43 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.05 Total: -2.36 kcal Total: -18.67 0.09 -18.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16769142_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.184 kcal (2) G-P(sol) polarization free energy of solvation -18.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds