Wall clock time and date at job start Tue Mar 9 2021 12:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86292 * 109.47180 * 2 1 4 4 C 1.50695 * 109.47090 * 239.99784 * 2 1 3 5 5 C 1.38273 * 119.94361 * 300.00558 * 4 2 1 6 6 C 1.38145 * 120.05465 * 180.02562 * 5 4 2 7 7 C 1.38734 * 119.94552 * 359.97438 * 6 5 4 8 8 O 1.35897 * 120.05665 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99793 * 179.97438 * 8 7 6 10 10 F 1.39898 * 109.47096 * 60.00213 * 9 8 7 11 11 F 1.39900 * 109.47385 * 299.99949 * 9 8 7 12 12 C 1.50702 * 109.46876 * 179.97438 * 9 8 7 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 9 8 14 14 N 1.34777 * 119.99928 * 179.72354 * 12 9 8 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 9 16 16 H 1.09001 * 109.46948 * 35.00281 * 15 14 12 17 17 C 1.52999 * 109.47481 * 154.99940 * 15 14 12 18 18 C 1.52995 * 109.47507 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47319 * 300.00556 * 18 17 15 20 20 H 1.08993 * 109.47268 * 299.99783 * 19 18 17 21 21 C 1.53000 * 109.47350 * 179.97438 * 19 18 17 22 22 F 1.39892 * 109.47458 * 179.97438 * 21 19 18 23 23 C 1.53005 * 109.47302 * 59.99629 * 19 18 17 24 24 C 1.52997 * 109.47288 * 275.00460 * 15 14 12 25 25 C 1.38733 * 119.88395 * 0.27895 * 7 6 5 26 26 C 1.38148 * 119.94838 * 359.46401 * 25 7 6 27 27 H 0.96703 * 114.00215 * 59.99660 * 1 2 3 28 28 H 1.09005 * 109.46672 * 119.99965 * 2 1 3 29 29 H 1.48503 * 110.00175 * 298.67910 * 3 2 1 30 30 H 1.48502 * 110.00143 * 59.99884 * 3 2 1 31 31 H 1.07994 * 119.97341 * 359.97099 * 5 4 2 32 32 H 1.07993 * 120.03046 * 180.02562 * 6 5 4 33 33 H 0.97000 * 120.00317 * 0.28382 * 14 12 9 34 34 H 1.09000 * 109.47556 * 300.00768 * 17 15 14 35 35 H 1.09007 * 109.46426 * 60.00536 * 17 15 14 36 36 H 1.09001 * 109.46891 * 60.00360 * 18 17 15 37 37 H 1.09000 * 109.47220 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.47062 * 300.00443 * 21 19 18 39 39 H 1.09000 * 109.46923 * 59.99556 * 21 19 18 40 40 H 1.09001 * 109.47005 * 60.00136 * 23 19 18 41 41 H 1.09000 * 109.46851 * 179.97438 * 23 19 18 42 42 H 1.08993 * 109.47268 * 299.99834 * 24 15 14 43 43 H 1.09006 * 109.47495 * 60.00048 * 24 15 14 44 44 H 1.08009 * 120.02352 * 179.72687 * 25 7 6 45 45 H 1.07997 * 119.97046 * 180.27271 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5965 -2.0342 -1.4481 6 6 2.0561 -2.6879 -2.5749 7 6 2.8539 -2.0149 -3.4889 8 8 3.3069 -2.6555 -4.5985 9 6 4.1229 -1.9002 -5.4959 10 9 5.2673 -1.4566 -4.8245 11 9 3.4016 -0.7977 -5.9666 12 6 4.5284 -2.7693 -6.6584 13 8 4.1549 -3.9218 -6.7132 14 7 5.3011 -2.2639 -7.6403 15 6 5.6904 -3.1070 -8.7734 16 1 4.8760 -3.7901 -9.0146 17 6 5.9915 -2.2242 -9.9862 18 6 6.3987 -3.1046 -11.1694 19 6 7.6472 -3.9086 -10.8011 20 1 8.4613 -3.2252 -10.5598 21 6 8.0539 -4.7895 -11.9841 22 9 9.1959 -5.5242 -11.6476 23 6 7.3460 -4.7914 -9.5883 24 6 6.9387 -3.9114 -8.4055 25 6 3.1927 -0.6882 -3.2655 26 6 2.7262 -0.0374 -2.1397 27 1 -0.3934 0.4418 -0.7650 28 1 1.7923 -0.5139 0.8901 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 0.9758 -2.5579 -0.7361 32 1 1.7940 -3.7217 -2.7448 33 1 5.5997 -1.3420 -7.5967 34 1 5.1022 -1.6511 -10.2483 35 1 6.8060 -1.5411 -9.7450 36 1 5.5845 -3.7881 -11.4107 37 1 6.6128 -2.4757 -12.0335 38 1 7.2396 -5.4729 -12.2251 39 1 8.2684 -4.1609 -12.8483 40 1 6.5319 -5.4749 -9.8296 41 1 8.2354 -5.3645 -9.3262 42 1 7.7531 -3.2284 -8.1643 43 1 6.7241 -4.5404 -7.5415 44 1 3.8173 -0.1634 -3.9733 45 1 2.9861 0.9966 -1.9677 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16769142_4549640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:01 Heat of formation + Delta-G solvation = -229.823371 kcal Electronic energy + Delta-G solvation = -32550.706874 eV Core-core repulsion = 27505.966816 eV Total energy + Delta-G solvation = -5044.740058 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.138 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.91285 -48.88162 -48.55186 -41.56955 -41.28659 -39.61418 -39.15406 -37.39153 -35.96750 -32.52756 -32.24344 -31.92889 -31.82413 -29.05786 -26.75517 -26.03297 -24.51263 -23.87874 -22.94885 -22.51496 -22.07969 -21.15324 -20.55137 -19.81951 -19.70498 -18.63789 -17.79201 -17.51541 -17.15435 -16.93474 -16.77036 -16.60142 -16.42736 -16.34671 -16.18734 -15.89430 -15.78459 -15.43776 -15.38166 -15.20495 -15.12827 -15.04072 -14.95499 -14.46533 -14.41099 -14.34314 -14.24089 -13.56191 -13.54479 -13.28805 -13.21299 -13.04990 -12.61116 -12.43021 -12.27310 -12.16512 -11.83794 -11.77627 -11.67607 -11.53212 -11.40905 -11.16792 -10.66132 -10.48118 -10.20004 -9.61029 -4.93414 -0.00061 0.14158 0.44876 0.61735 1.29202 1.58720 1.65807 1.94764 1.97775 2.43796 2.74377 3.20649 3.38104 3.49839 3.52708 3.53449 3.63177 3.64924 3.70519 3.85287 3.97717 4.07991 4.19205 4.21516 4.23931 4.31800 4.35556 4.38909 4.43876 4.47213 4.58120 4.67516 4.81551 4.81748 4.83953 4.89010 4.93607 5.02914 5.05284 5.11204 5.13717 5.16143 5.31529 5.32581 5.36787 5.43528 5.80394 5.85280 6.44976 6.46904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.762 3.238 4 C -0.139 4.139 5 C -0.058 4.058 6 C -0.137 4.137 7 C 0.085 3.915 8 O -0.306 6.306 9 C 0.434 3.566 10 F -0.170 7.170 11 F -0.171 7.171 12 C 0.516 3.484 13 O -0.508 6.508 14 N -0.682 5.682 15 C 0.143 3.857 16 H 0.083 0.917 17 C -0.120 4.120 18 C -0.106 4.106 19 C -0.118 4.118 20 H 0.087 0.913 21 C 0.055 3.945 22 F -0.240 7.240 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.193 4.193 26 C -0.077 4.077 27 H 0.386 0.614 28 H 0.131 0.869 29 H -0.282 1.282 30 H -0.301 1.301 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.423 0.577 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.142 0.858 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 4.743 -3.789 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.187 4.187 3 Si 0.667 3.333 4 C -0.139 4.139 5 C -0.076 4.076 6 C -0.155 4.155 7 C 0.043 3.957 8 O -0.223 6.223 9 C 0.357 3.643 10 F -0.151 7.151 11 F -0.153 7.153 12 C 0.294 3.706 13 O -0.382 6.382 14 N -0.335 5.335 15 C 0.041 3.959 16 H 0.101 0.899 17 C -0.157 4.157 18 C -0.144 4.144 19 C -0.136 4.136 20 H 0.105 0.895 21 C 0.000 4.000 22 F -0.221 7.221 23 C -0.150 4.150 24 C -0.165 4.165 25 C -0.212 4.212 26 C -0.094 4.094 27 H 0.236 0.764 28 H 0.148 0.852 29 H -0.208 1.208 30 H -0.229 1.229 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.160 0.840 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.509 4.253 -3.353 5.969 hybrid contribution -0.864 0.261 -0.224 0.930 sum 1.645 4.514 -3.577 5.990 Atomic orbital electron populations 1.86578 1.18378 1.80324 1.50215 1.25184 0.83483 1.11639 0.98361 0.94138 0.90405 0.72156 0.76581 1.20429 1.00371 0.95276 0.97865 1.21054 0.97047 0.93783 0.95684 1.20704 0.99323 1.01649 0.93836 1.19255 0.97315 0.92505 0.86668 1.86647 1.63984 1.39345 1.32314 1.21785 0.76725 0.79447 0.86380 1.93196 1.50555 1.89792 1.81569 1.93194 1.78172 1.55436 1.88466 1.19427 0.80947 0.87163 0.83062 1.90857 1.53955 1.17289 1.76062 1.45899 1.49237 1.17313 1.21040 1.21359 0.97328 0.92763 0.84491 0.89925 1.21795 1.03582 0.97839 0.92514 1.21442 0.96390 0.98548 0.98035 1.21796 0.99836 0.97507 0.94497 0.89469 1.22314 0.84512 0.94538 0.98593 1.92728 1.54907 1.80142 1.94330 1.21492 1.01587 0.97723 0.94232 1.21865 0.97456 0.98905 0.98289 1.21610 1.04838 0.93248 1.01467 1.21027 0.95696 1.00346 0.92344 0.76424 0.85180 1.20831 1.22939 0.83231 0.83837 0.73835 0.89507 0.89242 0.90883 0.88881 0.89834 0.88844 0.91645 0.91917 0.90207 0.93161 0.84013 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.85 12.77 -148.98 -1.90 -2.76 16 2 C -0.08 0.12 2.82 71.23 0.20 0.32 16 3 Si 0.76 -2.09 29.78 68.60 2.04 -0.04 16 4 C -0.14 0.00 5.39 -19.85 -0.11 -0.10 16 5 C -0.06 -0.07 9.60 22.26 0.21 0.14 16 6 C -0.14 -0.53 9.99 22.37 0.22 -0.31 16 7 C 0.09 0.51 6.48 22.51 0.15 0.66 16 8 O -0.31 -2.57 9.60 -73.35 -0.70 -3.28 16 9 C 0.43 1.64 2.05 71.24 0.15 1.78 16 10 F -0.17 -0.31 15.27 44.97 0.69 0.38 16 11 F -0.17 -0.33 15.31 44.97 0.69 0.36 16 12 C 0.52 2.07 7.31 87.66 0.64 2.72 16 13 O -0.51 -5.88 16.16 16.00 0.26 -5.63 16 14 N -0.68 2.37 5.08 -442.54 -2.25 0.12 16 15 C 0.14 -0.59 2.45 44.99 0.11 -0.48 16 16 H 0.08 -0.03 7.58 -2.39 -0.02 -0.05 16 17 C -0.12 1.15 5.39 30.59 0.16 1.32 16 18 C -0.11 1.02 5.20 30.59 0.16 1.18 16 19 C -0.12 0.73 2.52 -10.79 -0.03 0.71 16 20 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 21 C 0.06 -0.25 6.96 71.98 0.50 0.25 16 22 F -0.24 -0.88 16.84 44.97 0.76 -0.13 16 23 C -0.11 0.29 5.08 30.58 0.16 0.45 16 24 C -0.13 0.30 5.49 30.58 0.17 0.47 16 25 C -0.19 -0.53 8.26 22.37 0.18 -0.35 16 26 C -0.08 0.03 8.66 22.25 0.19 0.22 16 27 H 0.39 -1.44 8.70 -74.06 -0.64 -2.09 16 28 H 0.13 -0.46 7.96 -2.38 -0.02 -0.48 16 29 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 30 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 31 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 32 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 33 H 0.42 -3.91 8.60 -92.71 -0.80 -4.70 16 34 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.09 -1.06 8.14 -2.38 -0.02 -1.08 16 36 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.06 0.01 7.80 -2.39 -0.02 0.00 16 42 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 44 H 0.14 0.11 5.10 -2.91 -0.01 0.10 16 45 H 0.15 -0.78 4.87 -2.91 -0.01 -0.79 16 Total: 0.00 -18.77 376.83 2.30 -16.47 By element: Atomic # 1 Polarization: -14.11 SS G_CDS: -0.35 Total: -14.46 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 3.07 Total: 8.96 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -2.25 Total: 0.12 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -2.35 Total: -11.66 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 2.13 Total: 0.61 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.04 Total: -0.04 kcal Total: -18.77 2.30 -16.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16769142_4549640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.353 kcal (2) G-P(sol) polarization free energy of solvation -18.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds