Wall clock time and date at job start Tue Mar 9 2021 14:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99934 * 2 1 4 4 C 1.53002 * 112.85291 * 294.03138 * 3 2 1 5 5 F 1.39897 * 109.47266 * 196.37266 * 4 3 2 6 6 F 1.39908 * 109.46669 * 316.36666 * 4 3 2 7 7 F 1.39891 * 109.47284 * 76.36948 * 4 3 2 8 8 C 1.53778 * 113.61614 * 162.72047 * 3 2 1 9 9 C 1.53786 * 87.08246 * 270.88499 * 8 3 2 10 10 H 1.08995 * 113.68842 * 89.12446 * 9 8 3 11 11 N 1.46500 * 113.61429 * 220.01702 * 9 8 3 12 12 C 1.34776 * 119.99946 * 252.49788 * 11 9 8 13 13 O 1.21725 * 120.00216 * 359.97438 * 12 11 9 14 14 C 1.46570 * 119.99979 * 180.02562 * 12 11 9 15 15 C 1.40853 * 126.57630 * 180.02562 * 14 12 11 16 16 C 1.40094 * 132.86951 * 0.37282 * 15 14 12 17 17 C 1.36441 * 119.25279 * 180.18493 * 16 15 14 18 18 C 1.50705 * 120.29510 * 179.74116 * 17 16 15 19 19 O 1.42896 * 109.47519 * 119.72386 * 18 17 16 20 20 Si 1.86305 * 109.46969 * 239.72308 * 18 17 16 21 21 C 1.40158 * 119.41191 * 359.46371 * 17 16 15 22 22 C 1.35193 * 120.31973 * 0.25712 * 21 17 16 23 23 N 1.36239 * 120.69879 * 0.02562 * 22 21 17 24 24 N 1.40021 * 132.00709 * 180.02562 * 23 22 21 25 25 C 1.30738 * 109.60508 * 180.02562 * 24 23 22 26 26 C 1.53777 * 87.07872 * 334.56449 * 9 8 3 27 27 H 1.08994 * 109.47003 * 183.58139 * 1 2 3 28 28 H 1.08999 * 109.46906 * 303.57799 * 1 2 3 29 29 H 1.08991 * 109.47120 * 63.57749 * 1 2 3 30 30 H 1.08997 * 113.61771 * 156.34027 * 8 3 2 31 31 H 1.09004 * 113.61346 * 25.43556 * 8 3 2 32 32 H 0.97001 * 120.00042 * 72.49735 * 11 9 8 33 33 H 1.08002 * 120.37121 * 359.92335 * 16 15 14 34 34 H 1.08993 * 109.47228 * 359.71929 * 18 17 16 35 35 H 0.96700 * 114.00766 * 179.97438 * 19 18 17 36 36 H 1.48501 * 109.99795 * 178.67910 * 20 18 17 37 37 H 1.48498 * 110.00041 * 299.99983 * 20 18 17 38 38 H 1.07999 * 119.84295 * 180.27631 * 21 17 16 39 39 H 1.07990 * 119.64893 * 180.02562 * 22 21 17 40 40 H 1.08002 * 125.63108 * 180.02562 * 25 24 23 41 41 H 1.09009 * 113.61144 * 139.97793 * 26 9 8 42 42 H 1.09001 * 113.61821 * 270.88355 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7274 2.0818 -1.2877 5 9 2.6085 3.1642 -1.3828 6 9 1.9049 1.2379 -2.3895 7 9 0.4103 2.5529 -1.2685 8 6 3.4899 1.3210 0.4185 9 6 2.9973 1.4822 1.8664 10 1 2.8236 0.5355 2.3778 11 7 3.7994 2.4179 2.6584 12 6 4.6234 1.9538 3.6187 13 8 4.7007 0.7572 3.8283 14 6 5.4254 2.8900 4.4115 15 6 6.3262 2.5592 5.4426 16 6 6.7283 1.3393 6.0019 17 6 7.6384 1.3397 7.0185 18 6 8.0831 0.0414 7.6413 19 8 9.4944 -0.1083 7.4745 20 14 7.6700 0.0506 9.4579 21 6 8.1605 2.5579 7.4744 22 6 7.7624 3.7228 6.9158 23 7 6.8498 3.7331 5.9042 24 7 6.2799 4.7781 5.1669 25 6 5.4422 4.2901 4.2897 26 6 1.7214 2.1084 1.2794 27 1 -0.3633 -1.0256 0.0642 28 1 -0.3633 0.5684 0.8562 29 1 -0.3633 0.4573 -0.9202 30 1 4.0400 2.1850 0.0458 31 1 4.0055 0.3783 0.2351 32 1 3.7375 3.3715 2.4917 33 1 6.3193 0.4093 5.6355 34 1 7.5698 -0.7888 7.1562 35 1 9.8509 -0.9238 7.8526 36 1 8.0746 -1.2370 10.0773 37 1 8.3637 1.1780 10.1308 38 1 8.8847 2.5660 8.2756 39 1 8.1720 4.6551 7.2752 40 1 4.8604 4.8674 3.5864 41 1 0.8091 1.8013 1.7909 42 1 1.7880 3.1877 1.1419 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:37:25 Heat of formation + Delta-G solvation = -113.887880 kcal Electronic energy + Delta-G solvation = -33972.105838 eV Core-core repulsion = 28700.626636 eV Total energy + Delta-G solvation = -5271.479201 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.113 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.24303 -48.77086 -48.71495 -43.30355 -41.50426 -39.95454 -39.15550 -37.37692 -37.27221 -34.45036 -34.06199 -32.17059 -30.45921 -28.92050 -28.07847 -27.27920 -26.75022 -25.22842 -24.25755 -23.30253 -22.78395 -21.45159 -21.10173 -19.72930 -19.52650 -19.32302 -19.09298 -18.51185 -17.91509 -17.57113 -17.16865 -16.95289 -16.92894 -16.51890 -16.45169 -15.87255 -15.80997 -15.65162 -15.59547 -15.55841 -15.51116 -15.15626 -14.99949 -14.88293 -14.80541 -14.54686 -14.37593 -14.10395 -14.01569 -13.65811 -13.29707 -13.25619 -13.07564 -13.00700 -12.68273 -12.62861 -12.48760 -12.12139 -11.94704 -11.70361 -11.60373 -11.03830 -10.89053 -10.83403 -10.24464 -10.13553 -8.79292 -4.89488 -0.57623 -0.11824 1.01800 1.03716 1.22509 1.48718 1.61704 1.87719 2.05278 2.10345 2.22257 2.45853 2.58184 2.65303 2.88022 3.02468 3.18988 3.29421 3.45134 3.51559 3.57153 3.64522 3.71776 3.88334 3.95871 4.08225 4.21888 4.28139 4.31246 4.35529 4.40168 4.44297 4.48032 4.58588 4.64542 4.73770 4.77723 4.85151 4.94689 5.12250 5.17063 5.29055 5.46167 5.65498 5.75105 6.30105 6.53768 6.59660 7.29389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.042 3.958 4 C 0.437 3.563 5 F -0.173 7.173 6 F -0.188 7.188 7 F -0.181 7.181 8 C -0.133 4.133 9 C 0.146 3.854 10 H 0.113 0.887 11 N -0.703 5.703 12 C 0.604 3.396 13 O -0.584 6.584 14 C -0.337 4.337 15 C 0.152 3.848 16 C -0.111 4.111 17 C -0.020 4.020 18 C -0.087 4.087 19 O -0.552 6.552 20 Si 0.764 3.236 21 C -0.147 4.147 22 C 0.112 3.888 23 N -0.274 5.274 24 N -0.341 5.341 25 C 0.132 3.868 26 C -0.148 4.148 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.416 0.584 33 H 0.158 0.842 34 H 0.095 0.905 35 H 0.400 0.600 36 H -0.276 1.276 37 H -0.275 1.275 38 H 0.175 0.825 39 H 0.202 0.798 40 H 0.238 0.762 41 H 0.111 0.889 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 1.434 4.522 5.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.001 4.001 4 C 0.383 3.617 5 F -0.155 7.155 6 F -0.169 7.169 7 F -0.163 7.163 8 C -0.172 4.172 9 C 0.041 3.959 10 H 0.131 0.869 11 N -0.354 5.354 12 C 0.394 3.606 13 O -0.465 6.465 14 C -0.352 4.352 15 C 0.031 3.969 16 C -0.131 4.131 17 C -0.026 4.026 18 C -0.194 4.194 19 O -0.362 6.362 20 Si 0.665 3.335 21 C -0.168 4.168 22 C -0.013 4.013 23 N -0.037 5.037 24 N -0.161 5.161 25 C -0.049 4.049 26 C -0.185 4.185 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.254 0.746 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.252 0.748 36 H -0.202 1.202 37 H -0.201 1.201 38 H 0.192 0.808 39 H 0.219 0.781 40 H 0.254 0.746 41 H 0.130 0.870 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.232 2.152 5.544 6.073 hybrid contribution 0.416 -0.741 -1.352 1.597 sum -0.815 1.411 4.191 4.497 Atomic orbital electron populations 1.23291 0.78525 1.05379 1.01803 1.88109 1.22272 1.22303 1.94004 1.23633 1.00196 0.86414 0.89867 1.21304 0.74275 0.78642 0.87511 1.93174 1.68875 1.56858 1.96582 1.93195 1.95014 1.71184 1.57522 1.93189 1.36917 1.89369 1.96815 1.23789 0.91200 1.05832 0.96364 1.22050 0.89950 0.94573 0.89349 0.86936 1.45431 1.43135 1.10955 1.35919 1.16964 0.78276 0.86592 0.78724 1.90770 1.68203 1.17414 1.70162 1.19648 1.12717 0.94182 1.08653 1.19538 0.94724 0.87560 0.95075 1.20657 0.99674 0.96685 0.96038 1.19599 0.94039 0.95332 0.93615 1.24946 0.84911 0.96240 1.13310 1.86524 1.20018 1.47907 1.81754 0.93523 0.90768 0.78543 0.70665 1.21034 1.02752 0.89794 1.03230 1.22096 0.89724 1.02513 0.86995 1.46284 1.27746 1.05868 1.23820 1.77585 1.18091 1.08349 1.12069 1.24657 0.93159 0.92357 0.94697 1.24023 1.00169 1.02088 0.92269 0.87027 0.90958 0.93555 0.85617 0.89253 0.74566 0.82419 0.88676 0.74829 1.20177 1.20076 0.80751 0.78108 0.74648 0.87045 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.65 10.33 -148.98 -1.54 -2.19 16 3 C 0.04 -0.04 0.85 -10.27 -0.01 -0.05 16 4 C 0.44 0.71 2.52 71.98 0.18 0.89 16 5 F -0.17 -0.14 15.82 44.97 0.71 0.58 16 6 F -0.19 -1.17 17.10 44.97 0.77 -0.40 16 7 F -0.18 -0.29 15.38 44.97 0.69 0.40 16 8 C -0.13 0.20 7.13 31.12 0.22 0.42 16 9 C 0.15 -0.32 4.18 45.52 0.19 -0.13 16 10 H 0.11 0.26 7.46 -2.39 -0.02 0.24 16 11 N -0.70 2.07 5.35 -444.08 -2.37 -0.31 16 12 C 0.60 2.87 7.78 86.42 0.67 3.55 16 13 O -0.58 -7.01 15.30 -4.43 -0.07 -7.07 16 14 C -0.34 -1.40 6.17 -19.90 -0.12 -1.52 16 15 C 0.15 0.92 6.76 39.50 0.27 1.19 16 16 C -0.11 -0.46 9.35 22.30 0.21 -0.25 16 17 C -0.02 -0.01 4.53 -19.82 -0.09 -0.10 16 18 C -0.09 0.25 2.81 71.24 0.20 0.45 16 19 O -0.55 0.60 12.76 -148.98 -1.90 -1.30 16 20 Si 0.76 -3.85 31.97 68.60 2.19 -1.66 16 21 C -0.15 0.20 8.67 22.03 0.19 0.39 16 22 C 0.11 -0.07 11.18 83.31 0.93 0.87 16 23 N -0.27 -1.25 3.86 -187.28 -0.72 -1.97 16 24 N -0.34 -1.58 12.57 -56.62 -0.71 -2.29 16 25 C 0.13 -0.03 11.44 85.42 0.98 0.95 16 26 C -0.15 0.91 6.66 31.12 0.21 1.12 16 27 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.07 -0.45 6.58 -2.39 -0.02 -0.47 16 29 H 0.05 -0.07 6.63 -2.39 -0.02 -0.08 16 30 H 0.13 -0.49 7.02 -2.39 -0.02 -0.51 16 31 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.42 -4.03 7.65 -92.71 -0.71 -4.74 16 33 H 0.16 0.76 7.01 -2.91 -0.02 0.74 16 34 H 0.10 -0.49 7.71 -2.39 -0.02 -0.51 16 35 H 0.40 -3.58 8.74 -74.06 -0.65 -4.22 16 36 H -0.28 0.26 7.11 99.48 0.71 0.97 16 37 H -0.28 0.13 7.07 99.48 0.70 0.83 16 38 H 0.18 -0.85 7.52 -2.91 -0.02 -0.87 16 39 H 0.20 -1.35 8.06 -2.92 -0.02 -1.37 16 40 H 0.24 -2.47 7.46 -2.91 -0.02 -2.49 16 41 H 0.11 -0.87 6.68 -2.38 -0.02 -0.89 16 42 H 0.13 -1.31 8.04 -2.39 -0.02 -1.33 16 Total: 0.00 -24.54 367.78 2.06 -22.49 By element: Atomic # 1 Polarization: -15.00 SS G_CDS: -0.19 Total: -15.19 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.20 Total: 8.92 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -3.81 Total: -4.57 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -3.51 Total: -10.57 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 2.17 Total: 0.58 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.19 Total: -1.66 kcal Total: -24.54 2.06 -22.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.400 kcal (2) G-P(sol) polarization free energy of solvation -24.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds