Wall clock time and date at job start Tue Mar 9 2021 14:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00275 * 2 1 4 4 C 1.52997 * 112.85322 * 71.96674 * 3 2 1 5 5 F 1.39899 * 109.47217 * 284.15929 * 4 3 2 6 6 F 1.39901 * 109.46934 * 44.16374 * 4 3 2 7 7 F 1.39902 * 109.46924 * 164.16026 * 4 3 2 8 8 C 1.53784 * 113.61179 * 300.77487 * 3 2 1 9 9 C 1.53784 * 87.08151 * 270.88716 * 8 3 2 10 10 H 1.09000 * 113.61726 * 89.19655 * 9 8 3 11 11 N 1.46502 * 113.61336 * 220.01991 * 9 8 3 12 12 C 1.34777 * 120.00195 * 203.46672 * 11 9 8 13 13 O 1.21702 * 119.99503 * 359.97438 * 12 11 9 14 14 C 1.46671 * 120.00300 * 180.02562 * 12 11 9 15 15 C 1.37872 * 126.23411 * 180.33371 * 14 12 11 16 16 C 1.50703 * 126.45623 * 359.95356 * 15 14 12 17 17 C 1.39835 * 107.08769 * 180.11388 * 15 14 12 18 18 C 1.50690 * 126.06981 * 179.83763 * 17 15 14 19 19 O 1.42897 * 109.47380 * 65.15415 * 18 17 15 20 20 Si 1.86295 * 109.47355 * 305.14990 * 18 17 15 21 21 C 1.35458 * 107.86072 * 359.57824 * 17 15 14 22 22 C 1.50703 * 125.56182 * 180.24176 * 21 17 15 23 23 N 1.35536 * 108.87237 * 0.25690 * 21 17 15 24 24 C 1.53785 * 87.16884 * 334.60585 * 9 8 3 25 25 H 1.08997 * 109.47480 * 186.26167 * 1 2 3 26 26 H 1.08998 * 109.47539 * 306.26277 * 1 2 3 27 27 H 1.09007 * 109.47297 * 66.26186 * 1 2 3 28 28 H 1.08998 * 113.61823 * 156.33530 * 8 3 2 29 29 H 1.09010 * 113.69017 * 25.44169 * 8 3 2 30 30 H 0.97005 * 119.99779 * 23.46714 * 11 9 8 31 31 H 1.09008 * 109.46475 * 270.19099 * 16 15 14 32 32 H 1.08992 * 109.47425 * 30.19451 * 16 15 14 33 33 H 1.08998 * 109.47179 * 150.20100 * 16 15 14 34 34 H 1.09011 * 109.47351 * 185.14956 * 18 17 15 35 35 H 0.96706 * 113.99670 * 300.00006 * 19 18 17 36 36 H 1.48501 * 110.00059 * 58.68103 * 20 18 17 37 37 H 1.48500 * 110.00378 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.47128 * 93.59235 * 22 21 17 39 39 H 1.09002 * 109.46801 * 213.59164 * 22 21 17 40 40 H 1.08997 * 109.47104 * 333.59473 * 22 21 17 41 41 H 0.96998 * 125.67258 * 179.97438 * 23 21 17 42 42 H 1.09008 * 113.61146 * 139.94017 * 24 9 8 43 43 H 1.08996 * 113.61955 * 270.84044 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8532 2.0257 1.3406 5 9 0.5381 2.4842 1.4725 6 9 2.1450 1.1396 2.3831 7 9 2.7331 3.1122 1.3920 8 6 1.6022 2.1614 -1.2107 9 6 2.8149 1.5632 -1.9430 10 1 2.5912 0.6386 -2.4752 11 7 3.5397 2.5333 -2.7675 12 6 4.2920 2.1094 -3.8023 13 8 4.3696 0.9207 -4.0514 14 6 5.0181 3.0806 -4.6275 15 6 5.8153 2.7916 -5.7146 16 6 6.1037 1.4227 -6.2750 17 6 6.3089 4.0078 -6.1969 18 6 7.2295 4.1864 -7.3765 19 8 6.5575 3.7819 -8.5709 20 14 8.7542 3.1428 -7.1380 21 6 5.8080 4.9973 -5.4192 22 6 6.0806 6.4695 -5.5902 23 7 5.0220 4.4470 -4.4619 24 6 3.4447 1.3397 -0.5579 25 1 -0.3634 -1.0215 0.1121 26 1 -0.3634 0.6078 0.8286 27 1 -0.3634 0.4137 -0.9408 28 1 1.6838 3.2339 -1.0346 29 1 0.6446 1.8756 -1.6463 30 1 3.4781 3.4807 -2.5687 31 1 6.9868 1.0093 -5.7877 32 1 5.2501 0.7693 -6.0952 33 1 6.2830 1.4995 -7.3474 34 1 7.5161 5.2350 -7.4583 35 1 6.2730 2.8576 -8.5683 36 1 8.3745 1.7145 -6.9933 37 1 9.6706 3.3106 -8.2944 38 1 5.2969 6.9154 -6.2028 39 1 6.0965 6.9520 -4.6129 40 1 7.0454 6.6061 -6.0786 41 1 4.5425 4.9350 -3.7743 42 1 3.9726 0.3904 -0.4663 43 1 4.0311 2.1871 -0.2029 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:37:28 Heat of formation + Delta-G solvation = -183.841295 kcal Electronic energy + Delta-G solvation = -32080.695680 eV Core-core repulsion = 27100.749784 eV Total energy + Delta-G solvation = -4979.945896 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.133 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.28744 -48.82171 -48.75704 -42.69367 -41.53886 -39.92110 -37.89719 -37.37860 -34.65825 -33.77162 -32.77279 -29.32675 -29.29129 -28.17048 -27.43786 -26.78425 -26.42260 -24.07975 -22.43224 -21.47921 -20.94154 -20.22691 -19.74821 -19.57701 -19.42512 -19.15644 -17.79733 -17.40359 -16.98390 -16.79261 -16.48680 -16.42149 -15.92879 -15.75918 -15.65946 -15.59410 -15.48227 -15.24329 -15.15725 -14.93739 -14.92602 -14.82182 -14.54021 -14.37967 -14.22056 -13.79105 -13.70268 -13.52597 -13.42857 -13.33631 -13.17156 -13.08858 -12.70245 -12.60727 -12.55666 -12.39426 -11.79373 -11.62651 -11.12501 -10.95234 -10.74085 -10.34106 -9.56065 -8.97726 -4.85493 0.33729 1.29900 1.40967 1.56360 1.72603 1.91423 2.04567 2.06658 2.13812 2.23086 2.50451 2.58549 2.79611 3.21758 3.35035 3.47561 3.53540 3.76253 3.86342 3.95608 3.96889 4.14841 4.20867 4.24997 4.34074 4.37459 4.39485 4.50010 4.55579 4.58834 4.67990 4.70369 4.77301 4.79384 4.82945 4.98238 5.02317 5.17583 5.24962 5.30322 5.68228 5.70052 5.85525 6.33503 6.51503 6.54313 7.04100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.350 6.350 3 C 0.042 3.958 4 C 0.439 3.561 5 F -0.182 7.182 6 F -0.187 7.187 7 F -0.173 7.173 8 C -0.148 4.148 9 C 0.143 3.857 10 H 0.112 0.888 11 N -0.706 5.706 12 C 0.593 3.407 13 O -0.561 6.561 14 C -0.073 4.073 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.223 4.223 18 C -0.037 4.037 19 O -0.550 6.550 20 Si 0.734 3.266 21 C 0.100 3.900 22 C -0.098 4.098 23 N -0.519 5.519 24 C -0.131 4.131 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.413 0.587 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.377 0.623 36 H -0.268 1.268 37 H -0.304 1.304 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.433 0.567 42 H 0.090 0.910 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 7.135 2.106 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.268 6.268 3 C -0.001 4.001 4 C 0.385 3.615 5 F -0.163 7.163 6 F -0.168 7.168 7 F -0.154 7.154 8 C -0.186 4.186 9 C 0.038 3.962 10 H 0.130 0.870 11 N -0.357 5.357 12 C 0.382 3.618 13 O -0.439 6.439 14 C -0.185 4.185 15 C -0.088 4.088 16 C -0.151 4.151 17 C -0.229 4.229 18 C -0.147 4.147 19 O -0.358 6.358 20 Si 0.639 3.361 21 C -0.020 4.020 22 C -0.155 4.155 23 N -0.118 5.118 24 C -0.170 4.170 25 H 0.127 0.873 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.250 0.750 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.227 0.773 36 H -0.194 1.194 37 H -0.232 1.232 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.274 0.726 42 H 0.109 0.891 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.803 6.119 1.658 6.390 hybrid contribution -1.452 -0.097 0.287 1.483 sum -2.255 6.022 1.945 6.718 Atomic orbital electron populations 1.23318 0.78454 1.05167 1.02209 1.88111 1.22376 1.22322 1.93986 1.23627 1.00805 0.86839 0.88834 1.21264 0.73797 0.77875 0.88603 1.93182 1.36845 1.89645 1.96642 1.93198 1.93140 1.68658 1.61810 1.93174 1.69086 1.56420 1.96769 1.24024 1.00630 1.01742 0.92234 1.22108 0.91193 0.93742 0.89175 0.86998 1.45591 1.48840 1.10857 1.30432 1.17174 0.78094 0.86992 0.79522 1.90840 1.64623 1.17512 1.70974 1.19782 1.11295 0.83286 1.04110 1.19837 0.98293 0.95431 0.95276 1.20530 1.02411 0.92797 0.99382 1.19443 1.08500 0.92080 1.02868 1.24351 1.00815 1.07438 0.82135 1.86571 1.77390 1.33170 1.38689 0.94436 0.76906 0.79371 0.85385 1.20706 0.94246 0.96633 0.90388 1.20666 1.04400 0.85836 1.04588 1.41739 1.38495 1.04946 1.26574 1.23798 0.92249 1.05868 0.95040 0.87280 0.92939 0.91041 0.85207 0.87006 0.74988 0.91360 0.91293 0.91964 0.85322 0.77327 1.19373 1.23158 0.89776 0.88831 0.88332 0.72636 0.89086 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.50 113.37 1.19 1.18 16 2 O -0.35 -0.41 10.33 -148.98 -1.54 -1.95 16 3 C 0.04 -0.09 0.84 -10.21 -0.01 -0.10 16 4 C 0.44 0.21 2.67 71.98 0.19 0.40 16 5 F -0.18 -0.12 15.26 44.97 0.69 0.57 16 6 F -0.19 -0.99 17.10 44.97 0.77 -0.22 16 7 F -0.17 0.14 15.83 44.97 0.71 0.85 16 8 C -0.15 1.10 6.63 31.12 0.21 1.31 16 9 C 0.14 -0.50 4.15 45.52 0.19 -0.31 16 10 H 0.11 0.15 7.50 -2.39 -0.02 0.13 16 11 N -0.71 3.42 5.36 -443.98 -2.38 1.04 16 12 C 0.59 1.80 7.79 86.44 0.67 2.47 16 13 O -0.56 -6.37 14.43 -4.36 -0.06 -6.43 16 14 C -0.07 -0.09 7.06 40.35 0.28 0.20 16 15 C -0.08 -0.31 5.82 -19.56 -0.11 -0.43 16 16 C -0.09 -0.54 7.71 71.24 0.55 0.01 16 17 C -0.22 -0.09 4.66 -20.12 -0.09 -0.18 16 18 C -0.04 -0.01 2.85 71.23 0.20 0.19 16 19 O -0.55 -2.57 12.88 -148.98 -1.92 -4.49 16 20 Si 0.73 0.47 30.98 68.60 2.13 2.59 16 21 C 0.10 -0.44 7.13 41.34 0.29 -0.15 16 22 C -0.10 1.03 10.16 71.24 0.72 1.75 16 23 N -0.52 3.17 5.99 -171.93 -1.03 2.14 16 24 C -0.13 0.38 7.15 31.18 0.22 0.60 16 25 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.05 -0.15 6.18 -2.39 -0.01 -0.16 16 27 H 0.07 -0.49 6.65 -2.38 -0.02 -0.51 16 28 H 0.13 -1.52 8.01 -2.39 -0.02 -1.54 16 29 H 0.11 -0.99 6.49 -2.38 -0.02 -1.00 16 30 H 0.41 -4.90 7.84 -92.70 -0.73 -5.63 16 31 H 0.07 0.46 7.16 -2.38 -0.02 0.44 16 32 H 0.07 0.63 6.50 -2.39 -0.02 0.61 16 33 H 0.06 0.20 5.07 -2.39 -0.01 0.18 16 34 H 0.13 -0.48 6.45 -2.38 -0.02 -0.49 16 35 H 0.38 0.53 6.57 -74.05 -0.49 0.05 16 36 H -0.27 -1.29 5.06 99.48 0.50 -0.78 16 37 H -0.30 -2.37 7.11 99.48 0.71 -1.66 16 38 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.09 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.10 -1.15 6.87 -2.39 -0.02 -1.17 16 41 H 0.43 -5.87 8.19 -92.71 -0.76 -6.63 16 42 H 0.09 0.00 8.14 -2.38 -0.02 -0.01 16 43 H 0.13 -0.73 7.04 -2.39 -0.02 -0.75 16 Total: 0.00 -21.56 354.51 0.86 -20.70 By element: Atomic # 1 Polarization: -20.73 SS G_CDS: -1.02 Total: -21.75 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 4.51 Total: 6.95 kcal Atomic # 7 Polarization: 6.59 SS G_CDS: -3.41 Total: 3.18 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -3.52 Total: -12.88 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 2.17 Total: 1.20 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: 2.13 Total: 2.59 kcal Total: -21.56 0.86 -20.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.137 kcal (2) G-P(sol) polarization free energy of solvation -21.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds