Wall clock time and date at job start Tue Mar 9 2021 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99992 * 2 1 4 4 C 1.52998 * 112.90686 * 294.01117 * 3 2 1 5 5 F 1.39901 * 109.47193 * 196.27620 * 4 3 2 6 6 F 1.39899 * 109.47391 * 316.27943 * 4 3 2 7 7 F 1.39905 * 109.46987 * 76.27738 * 4 3 2 8 8 C 1.53782 * 113.61558 * 162.76039 * 3 2 1 9 9 C 1.53780 * 87.08169 * 270.88661 * 8 3 2 10 10 H 1.08989 * 113.61597 * 89.11596 * 9 8 3 11 11 N 1.46504 * 113.61025 * 220.01937 * 9 8 3 12 12 C 1.34770 * 119.99921 * 252.49512 * 11 9 8 13 13 O 1.21616 * 120.00124 * 0.02562 * 12 11 9 14 14 C 1.47377 * 120.00340 * 180.02562 * 12 11 9 15 15 C 1.36416 * 127.19706 * 179.97438 * 14 12 11 16 16 C 1.50702 * 125.79908 * 359.96633 * 15 14 12 17 17 O 1.33650 * 108.39876 * 179.97438 * 15 14 12 18 18 C 1.34218 * 110.90807 * 0.02562 * 17 15 14 19 19 C 1.50705 * 125.43626 * 180.02562 * 18 17 15 20 20 O 1.42894 * 109.46823 * 245.02242 * 19 18 17 21 21 Si 1.86298 * 109.47102 * 5.02480 * 19 18 17 22 22 C 1.34181 * 109.12447 * 359.74850 * 18 17 15 23 23 C 1.53775 * 113.61537 * 65.26555 * 3 2 1 24 24 H 1.08997 * 109.47552 * 303.55001 * 1 2 3 25 25 H 1.08998 * 109.47161 * 63.55296 * 1 2 3 26 26 H 1.09003 * 109.46893 * 183.55008 * 1 2 3 27 27 H 1.09001 * 113.61333 * 156.33214 * 8 3 2 28 28 H 1.08999 * 113.69088 * 25.44899 * 8 3 2 29 29 H 0.97002 * 120.00031 * 72.49868 * 11 9 8 30 30 H 1.08997 * 109.47015 * 89.99692 * 16 15 14 31 31 H 1.08998 * 109.47068 * 209.99562 * 16 15 14 32 32 H 1.09002 * 109.47093 * 329.99826 * 16 15 14 33 33 H 1.08998 * 109.47017 * 125.02422 * 19 18 17 34 34 H 0.96702 * 114.00151 * 59.99958 * 20 19 18 35 35 H 1.48497 * 110.00239 * 58.68115 * 21 19 18 36 36 H 1.48500 * 109.99636 * 180.02562 * 21 19 18 37 37 H 1.07999 * 127.02238 * 180.26955 * 22 18 17 38 38 H 1.09003 * 113.61501 * 334.56623 * 23 3 2 39 39 H 1.08998 * 113.61894 * 203.66956 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7285 2.0828 -1.2874 5 9 2.6087 3.1662 -1.3800 6 9 1.9083 1.2403 -2.3897 7 9 0.4108 2.5526 -1.2696 8 6 3.4901 1.3209 0.4176 9 6 2.9985 1.4816 1.8658 10 1 2.8253 0.5341 2.3758 11 7 3.8011 2.4172 2.6575 12 6 4.6256 1.9529 3.6171 13 8 4.7037 0.7572 3.8256 14 6 5.4327 2.8939 4.4140 15 6 6.3080 2.5876 5.4145 16 6 6.6281 1.2016 5.9121 17 8 6.8334 3.7256 5.8785 18 6 6.3373 4.7853 5.2209 19 6 6.7048 6.2239 5.4785 20 8 5.5608 6.9277 5.9661 21 14 8.0674 6.2992 6.7468 22 6 5.4665 4.3588 4.2933 23 6 1.7222 2.1080 1.2797 24 1 -0.3634 0.5679 0.8564 25 1 -0.3633 0.4577 -0.9201 26 1 -0.3633 -1.0257 0.0636 27 1 4.0400 2.1850 0.0446 28 1 4.0069 0.3789 0.2339 29 1 3.7391 3.3708 2.4911 30 1 7.4659 0.7963 5.3447 31 1 6.8928 1.2469 6.9685 32 1 5.7571 0.5590 5.7829 33 1 7.0460 6.6835 4.5509 34 1 5.2025 6.5725 6.7911 35 1 9.2518 5.5439 6.2653 36 1 8.4384 7.7128 7.0101 37 1 4.9042 4.9674 3.6007 38 1 0.8102 1.8009 1.7918 39 1 1.7886 3.1873 1.1426 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:39:19 Heat of formation + Delta-G solvation = -207.682115 kcal Electronic energy + Delta-G solvation = -29903.801383 eV Core-core repulsion = 24980.640629 eV Total energy + Delta-G solvation = -4923.160754 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.29238 -48.82294 -48.76079 -43.76404 -41.60281 -40.06539 -37.98644 -37.37521 -34.67427 -33.85105 -33.03948 -29.60512 -28.92574 -28.13052 -26.81975 -26.04724 -24.74161 -23.50275 -22.13311 -21.52533 -20.61009 -19.73092 -19.57519 -19.28623 -18.89225 -17.95960 -17.67990 -17.35771 -16.87489 -16.68978 -16.46581 -16.05645 -15.85484 -15.75177 -15.64428 -15.62225 -15.54579 -15.19666 -14.94539 -14.92653 -14.77459 -14.59585 -14.26556 -14.14945 -13.96307 -13.83646 -13.71450 -13.32277 -13.12029 -12.87307 -12.75692 -12.68637 -12.55752 -12.24861 -11.77476 -11.21492 -10.98622 -10.93110 -10.59460 -10.23492 -9.58614 -4.99816 0.22280 0.83062 1.17983 1.38393 1.45456 1.75993 1.91917 2.02558 2.11504 2.20076 2.51605 2.58620 2.81695 3.22938 3.23344 3.37316 3.48868 3.49083 3.71075 3.78503 3.98172 4.12076 4.22900 4.26805 4.32455 4.36589 4.40924 4.47242 4.57532 4.60985 4.65622 4.69672 4.76033 4.79445 4.87761 5.14236 5.22713 5.34662 5.69429 5.90215 6.42268 6.63540 7.10542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.044 3.956 4 C 0.438 3.562 5 F -0.174 7.174 6 F -0.186 7.186 7 F -0.181 7.181 8 C -0.133 4.133 9 C 0.143 3.857 10 H 0.116 0.884 11 N -0.701 5.701 12 C 0.593 3.407 13 O -0.569 6.569 14 C -0.270 4.270 15 C 0.088 3.912 16 C -0.086 4.086 17 O -0.171 6.171 18 C -0.061 4.061 19 C -0.022 4.022 20 O -0.540 6.540 21 Si 0.774 3.226 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.416 0.584 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.400 0.600 35 H -0.296 1.296 36 H -0.280 1.280 37 H 0.178 0.822 38 H 0.112 0.888 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 2.266 4.073 4.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C 0.000 4.000 4 C 0.383 3.617 5 F -0.156 7.156 6 F -0.168 7.168 7 F -0.163 7.163 8 C -0.171 4.171 9 C 0.038 3.962 10 H 0.134 0.866 11 N -0.352 5.352 12 C 0.383 3.617 13 O -0.450 6.450 14 C -0.274 4.274 15 C 0.034 3.966 16 C -0.142 4.142 17 O -0.068 6.068 18 C -0.109 4.109 19 C -0.133 4.133 20 O -0.348 6.348 21 Si 0.679 3.321 22 C -0.166 4.166 23 C -0.186 4.186 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.254 0.746 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.157 0.843 34 H 0.251 0.749 35 H -0.223 1.223 36 H -0.207 1.207 37 H 0.196 0.804 38 H 0.131 0.869 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.551 1.919 4.068 4.531 hybrid contribution -0.571 0.556 -1.515 1.711 sum -1.122 2.475 2.553 3.728 Atomic orbital electron populations 1.23301 0.78457 1.05455 1.01816 1.88109 1.22326 1.22142 1.93995 1.23598 1.00103 0.86446 0.89822 1.21288 0.74277 0.78638 0.87509 1.93175 1.68966 1.56836 1.96596 1.93196 1.94976 1.71208 1.57403 1.93195 1.36840 1.89412 1.96821 1.23769 0.91295 1.05919 0.96126 1.22120 0.90029 0.94559 0.89505 0.86649 1.45562 1.42789 1.11086 1.35742 1.17360 0.78583 0.86735 0.79035 1.90776 1.67753 1.17026 1.69413 1.21175 1.07240 0.94299 1.04734 1.23242 0.92087 0.88197 0.93052 1.20724 1.04751 0.85402 1.03320 1.83677 1.56296 1.13849 1.53005 1.22900 1.00866 0.89702 0.97437 1.24431 0.98056 0.83045 1.07746 1.86534 1.45910 1.55950 1.46409 0.93281 0.75058 0.78451 0.85318 1.22816 1.01062 0.91772 1.00950 1.24009 1.00176 1.01977 0.92460 0.91005 0.93508 0.86907 0.85780 0.88948 0.74641 0.88636 0.87997 0.88277 0.84318 0.74938 1.22326 1.20690 0.80416 0.86946 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.59 10.33 -148.98 -1.54 -2.13 16 3 C 0.04 -0.04 0.85 -10.27 -0.01 -0.05 16 4 C 0.44 0.77 2.52 71.98 0.18 0.95 16 5 F -0.17 -0.20 15.81 44.97 0.71 0.51 16 6 F -0.19 -1.14 17.10 44.97 0.77 -0.37 16 7 F -0.18 -0.33 15.39 44.97 0.69 0.36 16 8 C -0.13 0.20 7.13 31.12 0.22 0.42 16 9 C 0.14 -0.30 4.17 45.52 0.19 -0.11 16 10 H 0.12 0.22 7.46 -2.39 -0.02 0.20 16 11 N -0.70 1.69 5.35 -443.36 -2.37 -0.68 16 12 C 0.59 2.28 7.81 86.65 0.68 2.96 16 13 O -0.57 -5.80 14.45 -4.08 -0.06 -5.86 16 14 C -0.27 -0.58 6.31 -18.99 -0.12 -0.70 16 15 C 0.09 0.18 7.37 25.26 0.19 0.36 16 16 C -0.09 0.09 9.89 71.24 0.70 0.79 16 17 O -0.17 -0.13 8.90 4.46 0.04 -0.09 16 18 C -0.06 0.08 6.18 24.76 0.15 0.23 16 19 C -0.02 0.09 2.97 71.24 0.21 0.30 16 20 O -0.54 2.39 12.88 -148.98 -1.92 0.47 16 21 Si 0.77 -2.52 32.09 68.60 2.20 -0.32 16 22 C -0.15 0.24 10.48 23.65 0.25 0.49 16 23 C -0.15 0.85 6.66 31.12 0.21 1.06 16 24 H 0.07 -0.45 6.58 -2.39 -0.02 -0.46 16 25 H 0.05 -0.07 6.63 -2.39 -0.02 -0.09 16 26 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.12 -0.45 7.01 -2.39 -0.02 -0.47 16 28 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.42 -3.17 7.90 -92.71 -0.73 -3.90 16 30 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.10 0.19 6.49 -2.39 -0.02 0.17 16 33 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 34 H 0.40 -4.71 8.70 -74.06 -0.64 -5.35 16 35 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 36 H -0.28 -0.66 7.11 99.48 0.71 0.05 16 37 H 0.18 -1.18 7.74 -2.91 -0.02 -1.20 16 38 H 0.11 -0.85 6.68 -2.39 -0.02 -0.86 16 39 H 0.13 -1.15 8.03 -2.39 -0.02 -1.17 16 Total: 0.00 -18.20 342.94 2.35 -15.85 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -0.20 Total: -15.60 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.02 Total: 7.87 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -2.37 Total: -0.68 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -3.48 Total: -7.62 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 2.17 Total: 0.50 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.20 Total: -0.32 kcal Total: -18.20 2.35 -15.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.828 kcal (2) G-P(sol) polarization free energy of solvation -18.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds