Wall clock time and date at job start Tue Mar 9 2021 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86309 * 109.92924 * 2 1 4 4 C 1.87381 * 109.94954 * 238.73978 * 2 1 3 5 5 C 1.53713 * 107.28154 * 286.15479 * 4 2 1 6 6 C 1.52526 * 109.63954 * 300.87090 * 5 4 2 7 7 N 1.46502 * 109.04321 * 197.55196 * 6 5 4 8 8 C 1.34768 * 120.00116 * 155.00273 * 7 6 5 9 9 O 1.21589 * 120.00074 * 359.97438 * 8 7 6 10 10 C 1.47580 * 120.00002 * 180.02562 * 8 7 6 11 11 C 1.40193 * 119.83527 * 359.97438 * 10 8 7 12 12 C 1.36235 * 120.38368 * 179.97438 * 11 10 8 13 13 C 1.39878 * 119.95684 * 359.97438 * 12 11 10 14 14 C 1.46255 * 133.84238 * 179.97438 * 13 12 11 15 15 C 1.50704 * 126.48172 * 0.02631 * 14 13 12 16 16 O 1.42905 * 109.46935 * 284.99950 * 15 14 13 17 17 Si 1.86298 * 109.46951 * 164.99885 * 15 14 13 18 18 H 1.48499 * 109.47442 * 60.00108 * 17 15 14 19 19 H 1.48509 * 109.47020 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 299.99714 * 17 15 14 21 21 C 1.34449 * 107.03800 * 180.02562 * 14 13 12 22 22 N 1.36570 * 109.98291 * 0.02562 * 21 14 13 23 23 C 1.37833 * 109.86035 * 0.02562 * 22 21 14 24 24 C 1.38643 * 133.37940 * 180.28123 * 23 22 21 25 25 C 1.52522 * 111.65294 * 76.99164 * 6 5 4 26 26 C 1.53710 * 109.64159 * 283.00688 * 25 6 5 27 27 H 1.08995 * 109.46949 * 298.81902 * 1 2 3 28 28 H 1.08993 * 109.47330 * 58.82765 * 1 2 3 29 29 H 1.08997 * 109.46564 * 178.82411 * 1 2 3 30 30 H 1.09009 * 109.46816 * 181.17419 * 3 2 1 31 31 H 1.08995 * 109.46958 * 301.17094 * 3 2 1 32 32 H 1.08999 * 109.47027 * 61.17507 * 3 2 1 33 33 H 1.08998 * 109.89872 * 166.70806 * 4 2 1 34 34 H 1.09000 * 109.89106 * 45.59029 * 4 2 1 35 35 H 1.08999 * 109.44328 * 180.81649 * 5 4 2 36 36 H 1.09002 * 109.44474 * 60.92350 * 5 4 2 37 37 H 1.08992 * 109.04353 * 316.43052 * 6 5 4 38 38 H 0.97001 * 119.99491 * 334.99663 * 7 6 5 39 39 H 1.08003 * 119.81024 * 359.97438 * 11 10 8 40 40 H 1.08005 * 120.02124 * 179.97438 * 12 11 10 41 41 H 1.08997 * 109.46919 * 44.99841 * 15 14 13 42 42 H 0.96700 * 113.99813 * 299.99768 * 16 15 14 43 43 H 1.07999 * 125.01229 * 180.02562 * 21 14 13 44 44 H 0.96998 * 125.07322 * 179.97438 * 22 21 14 45 45 H 1.08001 * 120.16607 * 359.96124 * 24 23 22 46 46 H 1.09004 * 109.44428 * 43.06487 * 25 6 5 47 47 H 1.09007 * 109.43985 * 162.95717 * 25 6 5 48 48 H 1.09004 * 109.89263 * 178.57000 * 26 25 6 49 49 H 1.09001 * 109.89663 * 299.68425 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4980 1.7515 0.0000 4 6 2.5023 -0.9140 -1.5057 5 6 2.2743 -2.4142 -1.2601 6 6 3.0140 -2.8453 0.0021 7 7 3.1475 -4.3043 0.0032 8 6 4.1482 -4.8889 0.6910 9 8 4.9407 -4.2055 1.3101 10 6 4.2829 -6.3585 0.6916 11 6 3.3676 -7.1431 -0.0239 12 6 3.4817 -8.5007 -0.0315 13 6 4.5173 -9.1185 0.6774 14 6 4.9190 -10.5106 0.8763 15 6 4.2412 -11.7292 0.3047 16 8 3.0294 -11.9796 1.0197 17 14 5.3720 -13.2011 0.4644 18 1 5.6821 -13.4339 1.8979 19 1 4.7038 -14.4021 -0.0983 20 1 6.6311 -12.9409 -0.2786 21 6 6.0074 -10.4977 1.6656 22 7 6.3346 -9.2116 1.9883 23 6 5.4427 -8.3401 1.4011 24 6 5.3217 -6.9590 1.3997 25 6 2.2743 -2.4122 1.2637 26 6 2.5024 -0.9117 1.5070 27 1 -0.3633 0.4954 0.9003 28 1 -0.3633 0.5319 -0.8792 29 1 -0.3632 -1.0275 -0.0211 30 1 3.5879 1.7428 -0.0211 31 1 2.1218 2.2743 -0.8793 32 1 2.1561 2.2620 0.9003 33 1 3.5665 -0.7169 -1.6351 34 1 1.9546 -0.5960 -2.3928 35 1 2.6483 -2.9822 -2.1118 36 1 1.2078 -2.6039 -1.1383 37 1 4.0082 -2.3986 0.0018 38 1 2.5154 -4.8494 -0.4910 39 1 2.5673 -6.6686 -0.5724 40 1 2.7730 -9.0995 -0.5844 41 1 4.0135 -11.5584 -0.7475 42 1 3.1565 -12.1407 1.9647 43 1 6.5438 -11.3749 1.9957 44 1 7.0825 -8.9505 2.5480 45 1 6.0282 -6.3517 1.9461 46 1 1.2078 -2.6022 1.1422 47 1 2.6485 -2.9790 2.1163 48 1 1.9547 -0.5923 2.3937 49 1 3.5666 -0.7144 1.6361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:09:08 Heat of formation + Delta-G solvation = -61.690126 kcal Electronic energy + Delta-G solvation = -27628.823627 eV Core-core repulsion = 23871.871198 eV Total energy + Delta-G solvation = -3756.952429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45812 -40.87387 -38.24122 -37.68260 -37.26620 -33.91241 -33.22492 -32.04964 -30.69454 -30.56516 -29.26174 -28.45550 -26.87692 -26.39321 -24.27199 -23.62448 -23.44122 -21.48485 -21.19484 -20.79723 -19.36029 -18.38418 -17.77837 -17.14080 -16.87666 -16.30654 -16.14092 -15.95595 -15.84661 -15.50888 -15.20787 -14.94735 -14.76546 -14.72675 -14.63220 -14.24944 -14.05290 -13.98533 -13.82160 -13.40693 -13.34554 -13.26284 -13.15403 -13.09353 -12.92027 -12.65014 -12.48609 -12.45965 -12.22419 -12.14560 -12.07393 -11.78135 -11.74515 -10.89341 -10.79616 -10.72407 -10.47683 -10.34054 -10.24994 -9.92796 -9.32032 -8.78835 -0.21950 0.43596 1.14567 1.34409 1.40582 1.50064 1.73518 1.84857 1.87644 1.89358 1.93478 2.09025 2.31483 2.60876 2.99114 3.55679 3.59217 3.72937 3.77895 3.81547 3.90085 4.07935 4.14592 4.22241 4.34579 4.37432 4.45766 4.50178 4.53774 4.59452 4.64723 4.71992 4.75454 4.75848 4.76171 4.78477 4.79810 4.91014 5.02261 5.10009 5.21860 5.27978 5.32474 5.34860 5.44164 5.47383 5.49190 5.51705 5.55574 5.63829 5.65944 6.01930 6.37387 6.60119 6.62674 7.34139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.990 3.010 3 C -0.447 4.447 4 C -0.402 4.402 5 C -0.116 4.116 6 C 0.137 3.863 7 N -0.723 5.723 8 C 0.563 3.437 9 O -0.538 6.538 10 C -0.120 4.120 11 C -0.114 4.114 12 C -0.071 4.071 13 C -0.062 4.062 14 C -0.209 4.209 15 C -0.043 4.043 16 O -0.540 6.540 17 Si 0.946 3.054 18 H -0.253 1.253 19 H -0.250 1.250 20 H -0.250 1.250 21 C 0.067 3.933 22 N -0.584 5.584 23 C 0.082 3.918 24 C -0.058 4.058 25 C -0.117 4.117 26 C -0.403 4.403 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.374 0.626 43 H 0.173 0.827 44 H 0.422 0.578 45 H 0.135 0.865 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -1.769 -0.894 2.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.187 2.813 3 C -0.555 4.555 4 C -0.488 4.488 5 C -0.154 4.154 6 C 0.033 3.967 7 N -0.375 5.375 8 C 0.350 3.650 9 O -0.415 6.415 10 C -0.125 4.125 11 C -0.134 4.134 12 C -0.090 4.090 13 C -0.067 4.067 14 C -0.217 4.217 15 C -0.155 4.155 16 O -0.345 6.345 17 Si 0.768 3.232 18 H -0.177 1.177 19 H -0.173 1.173 20 H -0.174 1.174 21 C -0.062 4.062 22 N -0.186 5.186 23 C -0.025 4.025 24 C -0.079 4.079 25 C -0.155 4.155 26 C -0.489 4.489 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.235 0.765 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.132 0.868 42 H 0.221 0.779 43 H 0.190 0.810 44 H 0.259 0.741 45 H 0.153 0.847 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.268 -1.884 -0.898 2.104 hybrid contribution 0.119 0.132 0.600 0.626 sum 0.386 -1.752 -0.298 1.819 Atomic orbital electron populations 1.26085 1.20380 1.04405 1.04429 0.79668 0.67448 0.66920 0.67291 1.26073 1.06392 1.18646 1.04409 1.26200 1.06629 1.01330 1.14674 1.21462 1.00541 0.96789 0.96614 1.21066 1.01263 0.79433 0.94974 1.46043 1.31138 1.07932 1.52370 1.18149 0.80655 0.87397 0.78758 1.90790 1.42672 1.64975 1.43098 1.19468 0.98051 0.92555 1.02389 1.20699 0.98983 0.93674 1.00023 1.20215 0.96652 0.93891 0.98212 1.19140 0.96135 0.92070 0.99373 1.20718 0.99877 0.94072 1.06991 1.24264 0.92408 0.99914 0.98899 1.86521 1.29808 1.93294 1.24843 0.85803 0.78418 0.77699 0.81293 1.17710 1.17335 1.17373 1.21777 0.97876 0.87165 0.99354 1.41703 1.27285 1.04766 1.44850 1.18092 0.93332 0.91389 0.99658 1.20070 0.98209 0.90403 0.99224 1.21561 1.00089 0.96246 0.97604 1.26239 1.06566 1.01743 1.14375 0.91229 0.91256 0.91235 0.91157 0.91258 0.91215 0.90281 0.90132 0.91095 0.91102 0.89135 0.76465 0.85601 0.85032 0.86755 0.77890 0.81040 0.74067 0.84685 0.91687 0.91394 0.90499 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.71 8.65 101.05 0.87 1.58 16 2 Si 0.99 -2.32 11.59 -169.99 -1.97 -4.29 16 3 C -0.45 0.49 8.65 101.05 0.87 1.37 16 4 C -0.40 0.72 4.98 37.53 0.19 0.91 16 5 C -0.12 0.18 5.05 -26.60 -0.13 0.05 16 6 C 0.14 0.05 2.03 -68.42 -0.14 -0.09 16 7 N -0.72 -0.37 5.00 -55.31 -0.28 -0.65 16 8 C 0.56 1.90 7.51 -12.45 -0.09 1.81 16 9 O -0.54 -3.68 15.98 5.29 0.08 -3.60 16 10 C -0.12 -0.28 5.87 -104.95 -0.62 -0.89 16 11 C -0.11 -0.05 9.46 -39.57 -0.37 -0.43 16 12 C -0.07 -0.07 10.03 -39.69 -0.40 -0.47 16 13 C -0.06 -0.12 6.35 -105.05 -0.67 -0.78 16 14 C -0.21 -0.06 5.57 -102.74 -0.57 -0.63 16 15 C -0.04 0.03 3.06 36.01 0.11 0.14 16 16 O -0.54 -0.06 12.88 -35.23 -0.45 -0.52 16 17 Si 0.95 -1.49 26.08 -169.99 -4.43 -5.92 16 18 H -0.25 0.50 7.03 56.52 0.40 0.90 16 19 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 20 H -0.25 0.20 7.11 56.52 0.40 0.60 16 21 C 0.07 -0.08 10.43 -16.78 -0.17 -0.25 16 22 N -0.58 0.43 6.07 -10.68 -0.06 0.37 16 23 C 0.08 0.14 7.26 -84.00 -0.61 -0.47 16 24 C -0.06 -0.14 9.61 -39.03 -0.37 -0.52 16 25 C -0.12 -0.06 5.18 -26.61 -0.14 -0.20 16 26 C -0.40 0.14 4.98 37.53 0.19 0.32 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.06 7.96 -51.92 -0.41 -0.47 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.08 -0.11 7.99 -51.93 -0.41 -0.52 16 34 H 0.08 -0.18 7.99 -51.93 -0.41 -0.60 16 35 H 0.07 -0.11 8.13 -51.93 -0.42 -0.53 16 36 H 0.07 -0.19 7.69 -51.93 -0.40 -0.59 16 37 H 0.09 0.20 7.34 -51.93 -0.38 -0.18 16 38 H 0.40 -0.83 6.57 -40.82 -0.27 -1.10 16 39 H 0.13 -0.30 6.36 -52.48 -0.33 -0.63 16 40 H 0.13 -0.04 8.06 -52.48 -0.42 -0.47 16 41 H 0.11 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.37 -1.14 8.70 45.56 0.40 -0.74 16 43 H 0.17 -0.67 6.29 -52.49 -0.33 -1.00 16 44 H 0.42 -1.45 8.96 -40.82 -0.37 -1.81 16 45 H 0.14 0.32 7.62 -52.49 -0.40 -0.08 16 46 H 0.06 -0.05 7.69 -51.93 -0.40 -0.45 16 47 H 0.07 0.19 7.92 -51.92 -0.41 -0.22 16 48 H 0.08 -0.04 7.99 -51.93 -0.41 -0.45 16 49 H 0.08 0.04 7.99 -51.93 -0.41 -0.37 16 LS Contribution 392.57 15.07 5.92 5.92 Total: 0.00 -8.33 392.57 -10.35 -18.68 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: -7.09 Total: -11.43 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.06 Total: 1.45 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -0.34 Total: -0.28 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.37 Total: -4.12 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: -6.40 Total: -10.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -8.33 -10.35 -18.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.011 kcal (2) G-P(sol) polarization free energy of solvation -8.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds