Wall clock time and date at job start Tue Mar 9 2021 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86309 * 109.92924 * 2 1 4 4 C 1.87381 * 109.94954 * 238.73978 * 2 1 3 5 5 C 1.53713 * 107.28154 * 286.15479 * 4 2 1 6 6 C 1.52526 * 109.63954 * 300.87090 * 5 4 2 7 7 N 1.46502 * 109.04321 * 197.55196 * 6 5 4 8 8 C 1.34768 * 120.00116 * 155.00273 * 7 6 5 9 9 O 1.21589 * 120.00074 * 359.97438 * 8 7 6 10 10 C 1.47580 * 120.00002 * 180.02562 * 8 7 6 11 11 C 1.40193 * 119.83527 * 359.97438 * 10 8 7 12 12 C 1.36235 * 120.38368 * 179.97438 * 11 10 8 13 13 C 1.39878 * 119.95684 * 359.97438 * 12 11 10 14 14 C 1.46255 * 133.84238 * 179.97438 * 13 12 11 15 15 C 1.50704 * 126.48172 * 0.02631 * 14 13 12 16 16 O 1.42905 * 109.46935 * 284.99950 * 15 14 13 17 17 Si 1.86298 * 109.46951 * 164.99885 * 15 14 13 18 18 H 1.48499 * 109.47442 * 60.00108 * 17 15 14 19 19 H 1.48509 * 109.47020 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 299.99714 * 17 15 14 21 21 C 1.34449 * 107.03800 * 180.02562 * 14 13 12 22 22 N 1.36570 * 109.98291 * 0.02562 * 21 14 13 23 23 C 1.37833 * 109.86035 * 0.02562 * 22 21 14 24 24 C 1.38643 * 133.37940 * 180.28123 * 23 22 21 25 25 C 1.52522 * 111.65294 * 76.99164 * 6 5 4 26 26 C 1.53710 * 109.64159 * 283.00688 * 25 6 5 27 27 H 1.08995 * 109.46949 * 298.81902 * 1 2 3 28 28 H 1.08993 * 109.47330 * 58.82765 * 1 2 3 29 29 H 1.08997 * 109.46564 * 178.82411 * 1 2 3 30 30 H 1.09009 * 109.46816 * 181.17419 * 3 2 1 31 31 H 1.08995 * 109.46958 * 301.17094 * 3 2 1 32 32 H 1.08999 * 109.47027 * 61.17507 * 3 2 1 33 33 H 1.08998 * 109.89872 * 166.70806 * 4 2 1 34 34 H 1.09000 * 109.89106 * 45.59029 * 4 2 1 35 35 H 1.08999 * 109.44328 * 180.81649 * 5 4 2 36 36 H 1.09002 * 109.44474 * 60.92350 * 5 4 2 37 37 H 1.08992 * 109.04353 * 316.43052 * 6 5 4 38 38 H 0.97001 * 119.99491 * 334.99663 * 7 6 5 39 39 H 1.08003 * 119.81024 * 359.97438 * 11 10 8 40 40 H 1.08005 * 120.02124 * 179.97438 * 12 11 10 41 41 H 1.08997 * 109.46919 * 44.99841 * 15 14 13 42 42 H 0.96700 * 113.99813 * 299.99768 * 16 15 14 43 43 H 1.07999 * 125.01229 * 180.02562 * 21 14 13 44 44 H 0.96998 * 125.07322 * 179.97438 * 22 21 14 45 45 H 1.08001 * 120.16607 * 359.96124 * 24 23 22 46 46 H 1.09004 * 109.44428 * 43.06487 * 25 6 5 47 47 H 1.09007 * 109.43985 * 162.95717 * 25 6 5 48 48 H 1.09004 * 109.89263 * 178.57000 * 26 25 6 49 49 H 1.09001 * 109.89663 * 299.68425 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4980 1.7515 0.0000 4 6 2.5023 -0.9140 -1.5057 5 6 2.2743 -2.4142 -1.2601 6 6 3.0140 -2.8453 0.0021 7 7 3.1475 -4.3043 0.0032 8 6 4.1482 -4.8889 0.6910 9 8 4.9407 -4.2055 1.3101 10 6 4.2829 -6.3585 0.6916 11 6 3.3676 -7.1431 -0.0239 12 6 3.4817 -8.5007 -0.0315 13 6 4.5173 -9.1185 0.6774 14 6 4.9190 -10.5106 0.8763 15 6 4.2412 -11.7292 0.3047 16 8 3.0294 -11.9796 1.0197 17 14 5.3720 -13.2011 0.4644 18 1 5.6821 -13.4339 1.8979 19 1 4.7038 -14.4021 -0.0983 20 1 6.6311 -12.9409 -0.2786 21 6 6.0074 -10.4977 1.6656 22 7 6.3346 -9.2116 1.9883 23 6 5.4427 -8.3401 1.4011 24 6 5.3217 -6.9590 1.3997 25 6 2.2743 -2.4122 1.2637 26 6 2.5024 -0.9117 1.5070 27 1 -0.3633 0.4954 0.9003 28 1 -0.3633 0.5319 -0.8792 29 1 -0.3632 -1.0275 -0.0211 30 1 3.5879 1.7428 -0.0211 31 1 2.1218 2.2743 -0.8793 32 1 2.1561 2.2620 0.9003 33 1 3.5665 -0.7169 -1.6351 34 1 1.9546 -0.5960 -2.3928 35 1 2.6483 -2.9822 -2.1118 36 1 1.2078 -2.6039 -1.1383 37 1 4.0082 -2.3986 0.0018 38 1 2.5154 -4.8494 -0.4910 39 1 2.5673 -6.6686 -0.5724 40 1 2.7730 -9.0995 -0.5844 41 1 4.0135 -11.5584 -0.7475 42 1 3.1565 -12.1407 1.9647 43 1 6.5438 -11.3749 1.9957 44 1 7.0825 -8.9505 2.5480 45 1 6.0282 -6.3517 1.9461 46 1 1.2078 -2.6022 1.1422 47 1 2.6485 -2.9790 2.1163 48 1 1.9547 -0.5923 2.3937 49 1 3.5666 -0.7144 1.6361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:09:07 Heat of formation + Delta-G solvation = -57.866452 kcal Electronic energy + Delta-G solvation = -27628.657820 eV Core-core repulsion = 23871.871198 eV Total energy + Delta-G solvation = -3756.786622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47006 -41.05476 -38.26730 -37.67958 -37.36973 -34.03977 -33.24035 -31.99562 -30.72572 -30.60701 -29.14771 -28.31704 -26.89333 -26.33295 -24.32971 -23.66790 -23.41492 -21.52552 -21.33424 -20.77251 -19.38269 -18.41516 -17.79137 -17.19792 -16.94936 -16.32266 -16.12288 -16.05331 -15.81518 -15.56697 -15.18930 -14.96341 -14.86613 -14.77917 -14.56792 -14.26393 -14.00145 -13.89287 -13.71886 -13.35879 -13.28882 -13.14520 -13.12492 -13.02090 -12.88803 -12.67476 -12.47403 -12.40123 -12.23072 -12.12495 -12.02403 -11.72942 -11.69147 -11.12160 -10.78557 -10.70755 -10.40693 -10.28366 -10.26055 -10.00372 -9.37140 -8.79881 -0.32669 0.38115 1.27026 1.37241 1.52167 1.61331 1.86222 1.89738 1.92391 2.00302 2.01541 2.05965 2.27861 2.70812 2.87831 3.59217 3.64826 3.75010 3.79765 3.86220 3.91769 4.07411 4.13434 4.23388 4.30058 4.40338 4.47799 4.54764 4.55596 4.61256 4.67019 4.80933 4.82241 4.83459 4.85796 4.89280 4.90059 4.92507 4.98771 5.18148 5.21490 5.26282 5.29220 5.38995 5.42703 5.48605 5.49642 5.55343 5.61916 5.62656 5.71875 5.98086 6.49275 6.51199 6.84455 7.17370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.062 2.938 3 C -0.465 4.465 4 C -0.411 4.411 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.709 5.709 8 C 0.559 3.441 9 O -0.583 6.583 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.080 4.080 13 C -0.079 4.079 14 C -0.226 4.226 15 C -0.046 4.046 16 O -0.557 6.557 17 Si 0.987 3.013 18 H -0.240 1.240 19 H -0.277 1.277 20 H -0.260 1.260 21 C 0.077 3.923 22 N -0.579 5.579 23 C 0.066 3.934 24 C -0.070 4.070 25 C -0.116 4.116 26 C -0.423 4.423 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.414 0.586 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.386 0.614 43 H 0.202 0.798 44 H 0.433 0.567 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -2.582 -1.749 3.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.253 2.747 3 C -0.571 4.571 4 C -0.496 4.496 5 C -0.151 4.151 6 C 0.031 3.969 7 N -0.361 5.361 8 C 0.347 3.653 9 O -0.465 6.465 10 C -0.140 4.140 11 C -0.128 4.128 12 C -0.098 4.098 13 C -0.084 4.084 14 C -0.233 4.233 15 C -0.156 4.156 16 O -0.364 6.364 17 Si 0.810 3.190 18 H -0.163 1.163 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.052 4.052 22 N -0.182 5.182 23 C -0.040 4.040 24 C -0.092 4.092 25 C -0.154 4.154 26 C -0.506 4.506 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.131 0.869 42 H 0.235 0.765 43 H 0.219 0.781 44 H 0.273 0.727 45 H 0.143 0.857 46 H 0.103 0.897 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.841 -2.690 -1.731 3.307 hybrid contribution 0.484 0.361 0.899 1.083 sum -0.357 -2.329 -0.831 2.498 Atomic orbital electron populations 1.26167 1.20491 1.04864 1.04584 0.78606 0.66410 0.64779 0.64871 1.26287 1.06213 1.20137 1.04501 1.26300 1.06536 1.01214 1.15586 1.21477 1.01409 0.96973 0.95252 1.21122 1.00435 0.79110 0.96202 1.45972 1.30464 1.08286 1.51356 1.18417 0.80611 0.87852 0.78374 1.90757 1.44529 1.65960 1.45249 1.19508 0.98951 0.92030 1.03491 1.20930 0.98952 0.93520 0.99375 1.20451 0.96838 0.94209 0.98310 1.19534 0.96360 0.93105 0.99409 1.20900 1.00704 0.93718 1.07982 1.24390 0.92378 1.00041 0.98790 1.86483 1.30551 1.93331 1.26031 0.85214 0.76898 0.75447 0.81447 1.16350 1.20201 1.18400 1.22264 0.97261 0.87629 0.98006 1.41789 1.27201 1.04676 1.44558 1.18143 0.94253 0.91234 1.00415 1.20107 0.98457 0.90968 0.99664 1.21558 1.01013 0.96379 0.96455 1.26556 1.05786 1.01829 1.16478 0.91462 0.90737 0.90656 0.91731 0.90809 0.91460 0.90944 0.88775 0.90665 0.89001 0.91550 0.74747 0.82859 0.83727 0.86853 0.76478 0.78101 0.72730 0.85714 0.89709 0.94503 0.90514 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.09 8.65 113.37 0.98 3.07 16 2 Si 1.06 -5.25 11.59 68.60 0.80 -4.45 16 3 C -0.46 0.92 8.65 113.37 0.98 1.90 16 4 C -0.41 1.78 4.98 72.22 0.36 2.14 16 5 C -0.11 0.45 5.05 30.68 0.15 0.61 16 6 C 0.14 0.24 2.03 44.68 0.09 0.33 16 7 N -0.71 -1.36 5.00 -447.18 -2.23 -3.59 16 8 C 0.56 4.98 7.51 86.71 0.65 5.63 16 9 O -0.58 -10.02 15.98 -4.00 -0.06 -10.08 16 10 C -0.14 -0.84 5.87 -20.08 -0.12 -0.96 16 11 C -0.11 -0.13 9.46 22.28 0.21 0.09 16 12 C -0.08 -0.17 10.03 22.20 0.22 0.05 16 13 C -0.08 -0.33 6.35 -20.14 -0.13 -0.45 16 14 C -0.23 -0.05 5.57 -18.64 -0.10 -0.16 16 15 C -0.05 0.09 3.06 71.24 0.22 0.31 16 16 O -0.56 0.07 12.88 -148.98 -1.92 -1.85 16 17 Si 0.99 -3.97 26.08 68.60 1.79 -2.18 16 18 H -0.24 1.49 7.03 99.48 0.70 2.19 16 19 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 20 H -0.26 0.65 7.11 99.48 0.71 1.36 16 21 C 0.08 -0.24 10.43 83.09 0.87 0.62 16 22 N -0.58 0.80 6.07 -187.71 -1.14 -0.34 16 23 C 0.07 0.30 7.26 38.95 0.28 0.58 16 24 C -0.07 -0.50 9.61 22.63 0.22 -0.28 16 25 C -0.12 -0.27 5.18 30.67 0.16 -0.11 16 26 C -0.42 -0.33 4.98 72.22 0.36 0.03 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.07 -0.41 7.96 -2.39 -0.02 -0.42 16 30 H 0.06 -0.05 7.96 -2.38 -0.02 -0.07 16 31 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 32 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.07 -0.19 7.99 -2.39 -0.02 -0.20 16 34 H 0.09 -0.61 7.99 -2.39 -0.02 -0.62 16 35 H 0.07 -0.32 8.13 -2.39 -0.02 -0.34 16 36 H 0.09 -0.71 7.69 -2.39 -0.02 -0.73 16 37 H 0.07 0.46 7.34 -2.39 -0.02 0.44 16 38 H 0.41 -1.89 6.57 -92.71 -0.61 -2.50 16 39 H 0.15 -0.87 6.36 -2.91 -0.02 -0.88 16 40 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 42 H 0.39 -2.55 8.70 -74.06 -0.64 -3.20 16 43 H 0.20 -1.99 6.29 -2.91 -0.02 -2.01 16 44 H 0.43 -2.90 8.96 -92.71 -0.83 -3.73 16 45 H 0.12 1.00 7.62 -2.91 -0.02 0.98 16 46 H 0.08 -0.17 7.69 -2.39 -0.02 -0.19 16 47 H 0.04 0.31 7.92 -2.38 -0.02 0.29 16 48 H 0.08 0.03 7.99 -2.39 -0.02 0.01 16 49 H 0.06 0.24 7.99 -2.39 -0.02 0.22 16 Total: 0.00 -21.68 392.57 2.28 -19.40 By element: Atomic # 1 Polarization: -9.93 SS G_CDS: -0.36 Total: -10.29 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.41 Total: 13.39 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -3.37 Total: -3.93 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.98 Total: -11.93 kcal Atomic # 14 Polarization: -9.22 SS G_CDS: 2.58 Total: -6.63 kcal Total: -21.68 2.28 -19.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.467 kcal (2) G-P(sol) polarization free energy of solvation -21.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds