Wall clock time and date at job start Tue Mar 9 2021 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39281 * 121.03243 * 2 1 4 4 C 1.46502 * 134.20068 * 0.02562 * 3 2 1 5 5 C 1.50696 * 126.59842 * 0.02562 * 4 3 2 6 6 O 1.42897 * 109.47114 * 284.99897 * 5 4 3 7 7 Si 1.86300 * 109.46968 * 164.99741 * 5 4 3 8 8 H 1.48502 * 109.47091 * 60.00420 * 7 5 4 9 9 H 1.48500 * 109.46867 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47186 * 299.99687 * 7 5 4 11 11 C 1.34181 * 106.80215 * 179.97438 * 4 3 2 12 12 N 1.36946 * 109.95101 * 0.02562 * 11 4 3 13 13 C 1.37159 * 110.11826 * 359.97438 * 12 11 4 14 14 N 1.32823 * 132.96532 * 180.29760 * 13 12 11 15 15 C 1.31313 * 121.88495 * 180.19567 * 14 13 12 16 16 C 1.39757 * 121.02888 * 180.02562 * 2 1 3 17 17 C 1.47657 * 120.45519 * 0.02562 * 16 2 1 18 18 O 1.21581 * 119.99956 * 353.95744 * 17 16 2 19 19 N 1.34777 * 119.99917 * 173.95393 * 17 16 2 20 20 C 1.46497 * 119.99770 * 180.02562 * 19 17 16 21 21 C 1.52522 * 109.04287 * 277.15015 * 20 19 17 22 22 C 1.53712 * 109.64398 * 162.45395 * 21 20 19 23 23 Si 1.87378 * 107.28713 * 59.12349 * 22 21 20 24 24 C 1.86293 * 109.94922 * 195.09786 * 23 22 21 25 25 C 1.86298 * 110.01835 * 73.88302 * 23 22 21 26 26 C 1.87385 * 107.00687 * 314.47434 * 23 22 21 27 27 C 1.52522 * 109.04478 * 154.99954 * 20 19 17 28 28 H 1.08994 * 109.47363 * 263.68117 * 1 2 3 29 29 H 1.09001 * 109.46862 * 23.68403 * 1 2 3 30 30 H 1.09002 * 109.46876 * 143.68158 * 1 2 3 31 31 H 1.08998 * 109.47194 * 44.99789 * 5 4 3 32 32 H 0.96710 * 113.99956 * 300.00132 * 6 5 4 33 33 H 1.08000 * 125.02598 * 180.02562 * 11 4 3 34 34 H 0.97006 * 124.94638 * 179.97438 * 12 11 4 35 35 H 1.07994 * 119.30515 * 179.75537 * 15 14 13 36 36 H 0.97001 * 120.00154 * 359.97438 * 19 17 16 37 37 H 1.09001 * 109.03926 * 36.04170 * 20 19 17 38 38 H 1.09008 * 109.44030 * 282.50206 * 21 20 19 39 39 H 1.08996 * 109.44480 * 42.39678 * 21 20 19 40 40 H 1.09002 * 109.88953 * 299.67937 * 22 21 20 41 41 H 1.09005 * 109.89357 * 178.57019 * 22 21 20 42 42 H 1.09001 * 109.47307 * 177.56043 * 24 23 22 43 43 H 1.09000 * 109.47301 * 297.56102 * 24 23 22 44 44 H 1.09002 * 109.46945 * 57.56571 * 24 23 22 45 45 H 1.09002 * 109.47330 * 302.40393 * 25 23 22 46 46 H 1.09002 * 109.46923 * 62.40131 * 25 23 22 47 47 H 1.09003 * 109.47518 * 182.39668 * 25 23 22 48 48 H 1.08999 * 109.88964 * 286.08310 * 26 23 22 49 49 H 1.08996 * 109.95967 * 165.00690 * 26 23 22 50 50 H 1.08995 * 109.44408 * 317.60231 * 27 20 19 51 51 H 1.09001 * 109.44405 * 77.49385 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 0.0005 5 6 0.4527 3.1705 0.0017 6 8 -0.1201 3.0241 -1.2992 7 14 0.5076 4.9763 0.4565 8 1 1.3344 5.7114 -0.5341 9 1 -0.8708 5.5286 0.4571 10 1 1.1029 5.1283 1.8084 11 6 2.9949 3.3126 0.0008 12 7 4.0669 2.4604 0.0000 13 6 3.6348 1.1587 -0.0003 14 7 4.2721 -0.0067 0.0040 15 6 3.6267 -1.1502 -0.0013 16 6 2.2274 -1.1976 -0.0005 17 6 1.5225 -2.4950 -0.0017 18 8 0.3122 -2.5294 0.1087 19 7 2.2207 -3.6412 -0.1251 20 6 1.5213 -4.9284 -0.1268 21 6 1.2582 -5.3537 1.3141 22 6 0.1706 -6.4396 1.3419 23 14 0.7929 -7.8774 0.3140 24 6 -0.6153 -9.0297 -0.0853 25 6 2.1220 -8.7962 1.2413 26 6 1.4973 -7.1572 -1.2660 27 6 2.3695 -5.9548 -0.8707 28 1 -0.3634 -0.1131 1.0213 29 1 -0.3633 0.9411 -0.4128 30 1 -0.3633 -0.8281 -0.6087 31 1 -0.1542 2.6310 0.7287 32 1 0.3692 3.4796 -1.9980 33 1 3.0600 4.3906 0.0015 34 1 4.9967 2.7371 -0.0004 35 1 4.1870 -2.0734 -0.0015 36 1 3.1863 -3.6138 -0.2136 37 1 0.5678 -4.8143 -0.6426 38 1 2.1763 -5.7485 1.7492 39 1 0.9250 -4.4916 1.8918 40 1 -0.7533 -6.0502 0.9142 41 1 -0.0027 -6.7647 2.3678 42 1 -0.2537 -9.8395 -0.7191 43 1 -1.0190 -9.4440 0.8385 44 1 -1.3973 -8.4799 -0.6092 45 1 2.9323 -8.1106 1.4893 46 1 1.7042 -9.2117 2.1583 47 1 2.5072 -9.6040 0.6189 48 1 0.6872 -6.8294 -1.9175 49 1 2.1048 -7.9041 -1.7769 50 1 2.7868 -5.4986 -1.7683 51 1 3.1805 -6.2916 -0.2250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:29:33 Heat of formation + Delta-G solvation = -43.508539 kcal Electronic energy + Delta-G solvation = -30532.118475 eV Core-core repulsion = 26554.990929 eV Total energy + Delta-G solvation = -3977.127546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.86666 -41.11158 -38.95706 -37.95655 -37.60888 -35.04222 -34.12238 -31.97715 -31.92185 -30.99139 -29.17315 -28.89612 -28.30976 -26.87212 -26.16300 -24.56334 -23.87804 -23.43974 -21.70453 -21.47650 -20.63244 -19.32108 -18.76781 -17.80324 -17.56785 -17.11357 -16.75727 -16.39103 -16.18405 -15.94514 -15.69269 -15.50393 -15.23682 -14.98687 -14.79059 -14.40619 -14.17276 -13.94668 -13.85688 -13.79579 -13.70480 -13.63401 -13.33489 -13.26915 -13.22180 -13.22152 -13.12865 -13.00486 -12.78389 -12.45073 -12.35864 -12.11788 -12.09287 -11.72725 -11.70127 -11.16754 -11.13277 -10.70954 -10.56642 -10.36555 -10.24809 -10.18740 -9.97803 -9.62641 -9.13906 -0.34593 -0.09488 1.22047 1.38724 1.50863 1.59946 1.67821 1.82173 1.88391 1.98300 2.00471 2.06063 2.14754 2.72200 2.76005 3.30626 3.47523 3.58325 3.65843 3.70954 3.76116 3.82533 4.10404 4.11496 4.26921 4.27665 4.30442 4.43009 4.53008 4.58479 4.60844 4.68120 4.71492 4.78822 4.82992 4.84050 4.87628 4.90426 4.91367 4.93184 5.01465 5.18198 5.21133 5.27419 5.28672 5.32757 5.37012 5.47250 5.51852 5.57051 5.64060 5.72276 5.72772 6.19659 6.52547 6.80116 6.82716 7.21428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.064 3.936 3 C -0.166 4.166 4 C -0.198 4.198 5 C -0.058 4.058 6 O -0.554 6.554 7 Si 0.992 3.008 8 H -0.229 1.229 9 H -0.277 1.277 10 H -0.256 1.256 11 C 0.079 3.921 12 N -0.561 5.561 13 C 0.288 3.712 14 N -0.517 5.517 15 C 0.180 3.820 16 C -0.242 4.242 17 C 0.568 3.432 18 O -0.565 6.565 19 N -0.712 5.712 20 C 0.138 3.862 21 C -0.115 4.115 22 C -0.421 4.421 23 Si 1.060 2.940 24 C -0.466 4.466 25 C -0.454 4.454 26 C -0.410 4.410 27 C -0.114 4.114 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.388 0.612 33 H 0.217 0.783 34 H 0.438 0.562 35 H 0.194 0.806 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.074 0.926 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 1.352 -0.735 5.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 C -0.173 4.173 4 C -0.205 4.205 5 C -0.168 4.168 6 O -0.361 6.361 7 Si 0.813 3.187 8 H -0.152 1.152 9 H -0.202 1.202 10 H -0.180 1.180 11 C -0.047 4.047 12 N -0.167 5.167 13 C 0.054 3.946 14 N -0.230 5.230 15 C 0.012 3.988 16 C -0.249 4.249 17 C 0.356 3.644 18 O -0.445 6.445 19 N -0.364 5.364 20 C 0.034 3.966 21 C -0.154 4.154 22 C -0.505 4.505 23 Si 1.252 2.748 24 C -0.572 4.572 25 C -0.561 4.561 26 C -0.496 4.496 27 C -0.152 4.152 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.238 0.762 33 H 0.233 0.767 34 H 0.279 0.721 35 H 0.211 0.789 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.111 0.889 50 H 0.093 0.907 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.313 2.023 -0.111 5.687 hybrid contribution 0.036 -0.106 -0.240 0.265 sum 5.349 1.917 -0.351 5.693 Atomic orbital electron populations 1.21111 0.89330 1.04341 1.03067 1.20074 0.97137 0.90074 0.87152 1.19740 0.93218 0.94361 1.09959 1.20844 0.96391 0.90357 1.12957 1.24596 0.90261 1.12959 0.88952 1.86494 1.54370 1.78328 1.16943 0.85147 0.80415 0.72243 0.80898 1.15160 1.20229 1.18035 1.22295 0.84261 0.97152 1.01028 1.41576 1.10527 1.01778 1.62858 1.18777 0.89575 0.86795 0.99424 1.66521 1.40832 0.96445 1.19195 1.22973 0.89713 0.95290 0.90836 1.20557 0.95487 0.93484 1.15397 1.18018 0.86526 0.84049 0.75805 1.90740 1.15085 1.87551 1.51139 1.45951 1.11378 1.05069 1.73989 1.21090 0.96740 0.82222 0.96568 1.21556 0.99780 0.98416 0.95632 1.26526 1.01965 1.11895 1.10125 0.78622 0.65784 0.64613 0.65784 1.26299 1.14495 1.11285 1.05142 1.26177 1.12909 1.08601 1.08462 1.26298 1.05133 1.02621 1.15560 1.21478 0.98341 0.94709 1.00646 0.90735 0.89386 0.90183 0.87466 0.76239 0.76712 0.72112 0.78911 0.75027 0.91317 0.89818 0.94262 0.91884 0.90580 0.90899 0.91486 0.91717 0.90650 0.91505 0.90803 0.90922 0.88926 0.90716 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.46 71.24 0.60 -0.57 16 2 C 0.06 0.58 5.98 -19.25 -0.12 0.46 16 3 C -0.17 -1.11 6.16 -20.19 -0.12 -1.24 16 4 C -0.20 -0.21 5.57 -18.64 -0.10 -0.31 16 5 C -0.06 0.04 1.88 71.23 0.13 0.17 16 6 O -0.55 -0.44 11.66 -148.98 -1.74 -2.17 16 7 Si 0.99 -4.25 26.09 68.60 1.79 -2.46 16 8 H -0.23 1.80 7.03 99.48 0.70 2.50 16 9 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 10 H -0.26 0.80 7.11 99.48 0.71 1.50 16 11 C 0.08 -0.33 10.44 82.97 0.87 0.54 16 12 N -0.56 1.05 6.04 -192.24 -1.16 -0.11 16 13 C 0.29 1.53 8.42 134.02 1.13 2.66 16 14 N -0.52 -3.00 10.37 -191.74 -1.99 -4.99 16 15 C 0.18 0.53 10.67 85.20 0.91 1.44 16 16 C -0.24 -1.67 5.89 -19.99 -0.12 -1.79 16 17 C 0.57 4.46 7.47 86.73 0.65 5.11 16 18 O -0.56 -8.38 13.16 -3.97 -0.05 -8.43 16 19 N -0.71 -0.55 5.00 -447.10 -2.24 -2.79 16 20 C 0.14 0.11 2.03 44.68 0.09 0.20 16 21 C -0.12 -0.16 5.18 30.68 0.16 0.00 16 22 C -0.42 -0.09 4.98 72.22 0.36 0.27 16 23 Si 1.06 -5.44 11.60 68.60 0.80 -4.64 16 24 C -0.47 0.91 8.65 113.37 0.98 1.89 16 25 C -0.45 2.12 8.65 113.37 0.98 3.10 16 26 C -0.41 1.88 4.98 72.22 0.36 2.24 16 27 C -0.11 0.51 5.05 30.68 0.15 0.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.72 4.79 -2.39 -0.01 0.71 16 30 H 0.08 1.05 5.95 -2.39 -0.01 1.04 16 31 H 0.11 0.08 7.13 -2.39 -0.02 0.06 16 32 H 0.39 -2.52 8.70 -74.05 -0.64 -3.16 16 33 H 0.22 -2.60 6.30 -2.91 -0.02 -2.62 16 34 H 0.44 -3.26 8.96 -92.70 -0.83 -4.09 16 35 H 0.19 -1.03 6.43 -2.91 -0.02 -1.04 16 36 H 0.41 -2.37 6.66 -92.71 -0.62 -2.99 16 37 H 0.07 0.39 7.34 -2.39 -0.02 0.37 16 38 H 0.08 -0.23 7.69 -2.38 -0.02 -0.25 16 39 H 0.04 0.29 7.92 -2.39 -0.02 0.27 16 40 H 0.06 0.20 7.99 -2.39 -0.02 0.18 16 41 H 0.08 0.00 7.99 -2.38 -0.02 -0.02 16 42 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 43 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 44 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 45 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 47 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 48 H 0.07 -0.20 7.99 -2.39 -0.02 -0.22 16 49 H 0.09 -0.60 7.99 -2.39 -0.02 -0.62 16 50 H 0.07 -0.35 8.13 -2.39 -0.02 -0.37 16 51 H 0.09 -0.75 7.69 -2.39 -0.02 -0.77 16 Total: 0.00 -22.48 397.21 1.96 -20.51 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 6.91 Total: 14.85 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: -5.38 Total: -7.89 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.79 Total: -10.61 kcal Atomic # 14 Polarization: -9.69 SS G_CDS: 2.59 Total: -7.10 kcal Total: -22.48 1.96 -20.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.996 kcal (2) G-P(sol) polarization free energy of solvation -22.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds