Wall clock time and date at job start Tue Mar 9 2021 18:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38530 * 120.06859 * 0.02562 * 3 2 1 5 5 C 1.38290 * 119.99537 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.92476 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47044 * 104.99952 * 6 5 4 8 8 Si 1.86304 * 109.47092 * 344.99581 * 6 5 4 9 9 H 1.48500 * 109.46942 * 60.00287 * 8 6 5 10 10 H 1.48495 * 109.46961 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47241 * 300.00495 * 8 6 5 12 12 C 1.38211 * 120.14717 * 0.02562 * 5 4 3 13 13 N 1.47999 * 119.92464 * 179.97438 * 12 5 4 14 14 O 1.21806 * 119.99825 * 180.02562 * 13 12 5 15 15 O 1.21798 * 120.00224 * 0.02562 * 13 12 5 16 16 C 1.38286 * 120.14654 * 0.02562 * 12 5 4 17 17 C 1.38527 * 120.00148 * 359.67740 * 16 12 5 18 18 O 1.35989 * 120.07678 * 180.29800 * 17 16 12 19 19 C 1.42902 * 116.99738 * 0.32059 * 18 17 16 20 20 C 1.50707 * 109.46833 * 180.02562 * 19 18 17 21 21 O 1.21275 * 120.00095 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99636 * 179.97438 * 20 19 18 23 23 C 1.46502 * 119.99495 * 180.02562 * 22 20 19 24 24 C 1.52524 * 109.04096 * 277.15219 * 23 22 20 25 25 C 1.53716 * 109.64063 * 162.45322 * 24 23 22 26 26 Si 1.87381 * 107.28294 * 59.12262 * 25 24 23 27 27 C 1.86295 * 109.94656 * 195.09505 * 26 25 24 28 28 C 1.86298 * 109.94471 * 73.84627 * 26 25 24 29 29 C 1.87378 * 107.00844 * 314.47300 * 26 25 24 30 30 C 1.52519 * 109.04207 * 155.00324 * 23 22 20 31 31 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 33 33 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 34 34 H 1.07996 * 120.00403 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.46781 * 225.00237 * 6 5 4 36 36 H 0.96702 * 113.99812 * 299.99317 * 7 6 5 37 37 H 1.08003 * 120.00340 * 179.97438 * 16 12 5 38 38 H 1.09001 * 109.46853 * 299.99862 * 19 18 17 39 39 H 1.08991 * 109.47374 * 60.00076 * 19 18 17 40 40 H 0.96993 * 120.00203 * 0.02562 * 22 20 19 41 41 H 1.08994 * 109.03305 * 36.04345 * 23 22 20 42 42 H 1.09004 * 109.44186 * 282.50024 * 24 23 22 43 43 H 1.08999 * 109.44616 * 42.40003 * 24 23 22 44 44 H 1.08998 * 109.89353 * 299.68200 * 25 24 23 45 45 H 1.09004 * 109.89289 * 178.56720 * 25 24 23 46 46 H 1.09000 * 109.47158 * 177.56445 * 27 26 25 47 47 H 1.08997 * 109.47900 * 297.56584 * 27 26 25 48 48 H 1.09005 * 109.47377 * 57.56665 * 27 26 25 49 49 H 1.08996 * 109.47250 * 302.43548 * 28 26 25 50 50 H 1.09002 * 109.47172 * 62.43786 * 28 26 25 51 51 H 1.09003 * 109.47322 * 182.43559 * 28 26 25 52 52 H 1.09004 * 109.89345 * 286.08626 * 29 26 25 53 53 H 1.09002 * 109.89493 * 164.97509 * 29 26 25 54 54 H 1.09006 * 109.44213 * 317.59930 * 30 23 22 55 55 H 1.08999 * 109.44634 * 77.49515 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 0.0005 5 6 1.9230 3.6057 0.0000 6 6 1.1022 4.8697 0.0012 7 8 1.1368 5.4588 1.3026 8 14 -0.6595 4.4666 -0.4516 9 1 -1.2190 3.5121 0.5389 10 1 -1.4680 5.7121 -0.4510 11 1 -0.6953 3.8542 -1.8040 12 6 3.3031 3.6798 -0.0016 13 7 3.9716 5.0002 -0.0027 14 8 5.1878 5.0670 -0.0046 15 8 3.3057 6.0200 -0.0018 16 6 4.0606 2.5229 -0.0032 17 6 3.4365 1.2862 0.0035 18 8 4.1799 0.1476 0.0081 19 6 5.6007 0.3005 0.0127 20 6 6.2522 -1.0584 0.0167 21 8 5.5673 -2.0593 0.0152 22 7 7.5961 -1.1614 0.0208 23 6 8.2294 -2.4825 0.0241 24 6 8.2783 -3.0072 1.4554 25 6 8.5205 -4.5251 1.4411 26 14 10.1446 -4.8215 0.5548 27 6 10.2961 -6.6190 0.0897 28 6 11.5667 -4.3249 1.6511 29 6 10.1276 -3.7608 -0.9898 30 6 9.6246 -2.3670 -0.5811 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 0.2149 2.3193 0.0005 35 1 1.5130 5.5702 -0.7259 36 1 0.7856 4.8899 2.0013 37 1 5.1389 2.5834 -0.0049 38 1 5.9100 0.8487 -0.8773 39 1 5.9039 0.8518 0.9026 40 1 8.1439 -0.3610 0.0216 41 1 7.6336 -3.1638 -0.5832 42 1 9.0882 -2.5157 1.9946 43 1 7.3315 -2.7956 1.9521 44 1 7.7111 -5.0249 0.9090 45 1 8.5815 -4.9006 2.4627 46 1 11.2227 -6.7746 -0.4629 47 1 10.3053 -7.2287 0.9932 48 1 9.4490 -6.9058 -0.5334 49 1 11.4581 -3.2783 1.9354 50 1 11.5693 -4.9463 2.5466 51 1 12.5049 -4.4596 1.1127 52 1 9.4560 -4.1949 -1.7305 53 1 11.1349 -3.6862 -1.3996 54 1 9.5869 -1.7228 -1.4596 55 1 10.3047 -1.9371 0.1543 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:43:34 Heat of formation + Delta-G solvation = -144.989287 kcal Electronic energy + Delta-G solvation = -37960.758974 eV Core-core repulsion = 32898.154176 eV Total energy + Delta-G solvation = -5062.604798 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 412.176 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.38241 -42.14421 -41.16467 -39.81688 -39.24342 -37.92180 -37.64998 -37.11825 -34.16460 -32.71054 -32.53707 -32.01343 -30.04720 -29.13779 -28.84360 -28.33341 -27.91852 -26.47843 -25.65871 -23.91844 -23.49678 -23.20521 -21.66434 -21.56554 -20.78223 -19.83572 -19.56784 -18.76513 -18.64837 -18.42488 -17.77502 -17.67778 -17.47054 -17.06148 -16.90298 -16.63578 -16.18814 -16.12898 -15.76156 -15.55813 -15.13703 -15.00027 -14.95262 -14.82681 -14.10240 -13.96861 -13.90173 -13.87747 -13.73005 -13.50364 -13.36943 -13.30802 -13.15601 -13.06424 -13.05807 -12.93338 -12.73976 -12.54681 -12.49696 -12.46688 -12.41073 -12.22695 -12.21170 -12.14355 -12.06489 -11.75466 -11.61297 -11.10491 -10.72507 -10.52102 -10.46778 -10.42416 -10.32733 -10.03059 -9.52889 -1.35072 -0.47220 0.17168 0.31297 0.99624 1.23317 1.32911 1.39509 1.45822 1.82446 1.85113 1.86193 1.88072 1.97214 2.04085 2.35150 2.69066 2.95200 3.15360 3.25600 3.42295 3.51076 3.55471 3.76163 3.86050 3.89457 3.91798 4.02438 4.04745 4.06654 4.20888 4.23536 4.23976 4.32516 4.38373 4.54001 4.60044 4.64772 4.65743 4.71485 4.79494 4.81473 4.84079 4.85902 4.88563 4.91000 5.16766 5.23848 5.26275 5.28675 5.34328 5.47386 5.48867 5.54990 5.60714 5.70449 6.00169 6.41588 6.51713 6.64367 7.09813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.307 6.307 3 C 0.167 3.833 4 C -0.181 4.181 5 C -0.038 4.038 6 C -0.099 4.099 7 O -0.533 6.533 8 Si 0.973 3.027 9 H -0.222 1.222 10 H -0.263 1.263 11 H -0.246 1.246 12 C -0.040 4.040 13 N 0.035 4.965 14 O -0.191 6.191 15 O -0.152 6.152 16 C -0.109 4.109 17 C 0.101 3.899 18 O -0.292 6.292 19 C 0.026 3.974 20 C 0.513 3.487 21 O -0.566 6.566 22 N -0.708 5.708 23 C 0.137 3.863 24 C -0.117 4.117 25 C -0.424 4.424 26 Si 1.061 2.939 27 C -0.467 4.467 28 C -0.454 4.454 29 C -0.411 4.411 30 C -0.113 4.113 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.181 0.819 35 H 0.128 0.872 36 H 0.386 0.614 37 H 0.185 0.815 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.421 0.579 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.093 0.907 54 H 0.077 0.923 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -2.329 -0.155 2.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.119 3.881 4 C -0.199 4.199 5 C -0.040 4.040 6 C -0.207 4.207 7 O -0.339 6.339 8 Si 0.792 3.208 9 H -0.145 1.145 10 H -0.188 1.188 11 H -0.169 1.169 12 C -0.124 4.124 13 N 0.549 4.451 14 O -0.400 6.400 15 O -0.369 6.369 16 C -0.128 4.128 17 C 0.054 3.946 18 O -0.204 6.204 19 C -0.051 4.051 20 C 0.299 3.701 21 O -0.444 6.444 22 N -0.361 5.361 23 C 0.033 3.967 24 C -0.155 4.155 25 C -0.507 4.507 26 Si 1.252 2.748 27 C -0.573 4.573 28 C -0.561 4.561 29 C -0.497 4.497 30 C -0.151 4.151 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.198 0.802 35 H 0.145 0.855 36 H 0.235 0.765 37 H 0.202 0.798 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.112 0.888 54 H 0.096 0.904 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.674 -3.807 -0.696 3.928 hybrid contribution 0.488 0.464 0.438 0.803 sum -0.186 -3.343 -0.258 3.358 Atomic orbital electron populations 1.23734 0.75085 1.07007 1.03549 1.86325 1.24458 1.24743 1.86384 1.18685 0.89306 0.86225 0.93920 1.21192 1.02047 0.88755 1.07952 1.20200 0.91299 0.97500 0.95024 1.25597 1.10615 0.93501 0.91010 1.86683 1.86985 1.44359 1.15886 0.85426 0.72739 0.80945 0.81717 1.14500 1.18769 1.16896 1.20505 0.92566 0.82152 1.17202 1.43640 1.00830 1.03280 0.97313 1.94513 0.96428 1.94060 1.54952 1.94573 1.64425 1.25138 1.52742 1.20924 1.03075 0.88093 1.00721 1.17954 0.88650 0.85277 1.02748 1.86302 1.18566 1.26858 1.88701 1.22939 0.78697 0.96202 1.07283 1.20342 0.83271 0.90386 0.76104 1.90776 1.63963 1.39806 1.49891 1.45876 1.05070 1.10714 1.74482 1.21109 0.95013 0.83586 0.97002 1.21570 1.01800 0.96288 0.95848 1.26545 1.18018 0.97426 1.08726 0.78616 0.64866 0.65279 0.65991 1.26312 1.04507 1.21102 1.05396 1.26174 1.13958 1.05987 1.10019 1.26292 1.04568 1.03975 1.14863 1.21472 0.93243 0.98574 1.01770 0.85788 0.90259 0.90053 0.80192 0.85464 0.76507 0.79782 0.85348 0.85442 0.74134 0.91566 0.89534 0.94297 0.92062 0.90537 0.90873 0.91512 0.91771 0.90572 0.91524 0.90786 0.90947 0.88823 0.90403 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.64 10.28 -79.61 -0.82 -1.46 16 3 C 0.17 0.17 6.70 22.57 0.15 0.32 16 4 C -0.18 0.51 7.65 22.35 0.17 0.68 16 5 C -0.04 0.00 5.26 -19.86 -0.10 -0.11 16 6 C -0.10 0.04 1.74 71.24 0.12 0.16 16 7 O -0.53 -0.65 11.80 -129.63 -1.53 -2.18 16 8 Si 0.97 -4.52 25.49 68.60 1.75 -2.77 16 9 H -0.22 1.99 6.73 99.48 0.67 2.66 16 10 H -0.26 0.12 7.11 99.48 0.71 0.83 16 11 H -0.25 1.08 7.11 99.48 0.71 1.79 16 12 C -0.04 -0.14 6.85 36.38 0.25 0.11 16 13 N 0.04 0.31 4.45 -46.46 -0.21 0.10 16 14 O -0.19 -1.91 18.44 18.88 0.35 -1.56 16 15 O -0.15 -1.72 14.62 25.10 0.37 -1.35 16 16 C -0.11 0.00 8.54 22.35 0.19 0.19 16 17 C 0.10 0.19 6.70 22.57 0.15 0.34 16 18 O -0.29 -1.37 9.46 -67.01 -0.63 -2.00 16 19 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 20 C 0.51 1.50 7.66 87.66 0.67 2.17 16 21 O -0.57 -8.09 16.17 16.02 0.26 -7.83 16 22 N -0.71 2.58 5.05 -444.04 -2.24 0.34 16 23 C 0.14 -0.21 2.03 44.67 0.09 -0.12 16 24 C -0.12 0.05 5.18 30.68 0.16 0.21 16 25 C -0.42 0.37 4.98 72.22 0.36 0.73 16 26 Si 1.06 -6.60 11.59 68.60 0.80 -5.81 16 27 C -0.47 1.28 8.65 113.37 0.98 2.26 16 28 C -0.45 2.60 8.65 113.37 0.98 3.58 16 29 C -0.41 2.47 4.98 72.22 0.36 2.83 16 30 C -0.11 0.75 5.05 30.67 0.15 0.90 16 31 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 32 H 0.08 -0.80 7.66 -2.39 -0.02 -0.82 16 33 H 0.08 -0.85 7.66 -2.38 -0.02 -0.87 16 34 H 0.18 -1.47 3.12 -2.91 -0.01 -1.48 16 35 H 0.13 0.26 6.07 -2.39 -0.01 0.25 16 36 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 37 H 0.19 -0.89 5.85 -2.91 -0.02 -0.90 16 38 H 0.13 -1.20 7.65 -2.39 -0.02 -1.22 16 39 H 0.13 -1.16 7.68 -2.39 -0.02 -1.18 16 40 H 0.42 -4.78 8.58 -92.71 -0.80 -5.57 16 41 H 0.07 0.27 7.34 -2.39 -0.02 0.25 16 42 H 0.09 -0.41 7.69 -2.39 -0.02 -0.43 16 43 H 0.04 0.21 7.92 -2.39 -0.02 0.19 16 44 H 0.06 0.15 7.99 -2.39 -0.02 0.13 16 45 H 0.08 -0.08 7.99 -2.38 -0.02 -0.10 16 46 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 47 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 48 H 0.06 -0.10 7.96 -2.38 -0.02 -0.11 16 49 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 50 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 51 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 52 H 0.07 -0.30 7.99 -2.38 -0.02 -0.32 16 53 H 0.09 -0.73 7.99 -2.39 -0.02 -0.75 16 54 H 0.08 -0.57 8.13 -2.38 -0.02 -0.59 16 55 H 0.09 -0.95 7.69 -2.39 -0.02 -0.97 16 Total: 0.00 -28.83 443.57 4.49 -24.34 By element: Atomic # 1 Polarization: -15.72 SS G_CDS: 0.23 Total: -15.49 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.17 Total: 15.68 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -2.45 Total: 0.44 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -2.01 Total: -16.38 kcal Atomic # 14 Polarization: -11.12 SS G_CDS: 2.54 Total: -8.58 kcal Total: -28.83 4.49 -24.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.650 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds