Wall clock time and date at job start Tue Mar 9 2021 18:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86304 * 110.00253 * 2 1 4 4 C 1.87380 * 109.94544 * 121.21857 * 2 1 3 5 5 C 1.53717 * 107.28135 * 73.84202 * 4 2 1 6 6 C 1.52523 * 109.64045 * 59.13071 * 5 4 2 7 7 N 1.46501 * 109.04533 * 162.44838 * 6 5 4 8 8 C 1.34768 * 119.99853 * 204.99737 * 7 6 5 9 9 O 1.21280 * 120.00640 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99931 * 179.97438 * 8 7 6 11 11 O 1.42900 * 109.47402 * 180.02562 * 10 8 7 12 12 C 1.35919 * 116.99831 * 180.02562 * 11 10 8 13 13 C 1.38670 * 120.06172 * 359.72406 * 12 11 10 14 14 C 1.38192 * 119.95340 * 179.72183 * 13 12 11 15 15 C 1.38239 * 120.07103 * 0.53376 * 14 13 12 16 16 C 1.50704 * 119.94312 * 179.74539 * 15 14 13 17 17 O 1.42898 * 109.46926 * 120.01809 * 16 15 14 18 18 Si 1.86304 * 109.46758 * 0.02562 * 16 15 14 19 19 H 1.48498 * 109.47166 * 300.00402 * 18 16 15 20 20 H 1.48502 * 109.47177 * 60.00347 * 18 16 15 21 21 H 1.48497 * 109.46741 * 180.02562 * 18 16 15 22 22 C 1.38288 * 120.11858 * 359.76523 * 15 14 13 23 23 C 1.38195 * 120.04536 * 359.95337 * 22 15 14 24 24 Br 1.89093 * 120.03766 * 180.02562 * 23 22 15 25 25 C 1.52526 * 111.65044 * 283.00391 * 6 5 4 26 26 C 1.53718 * 109.64069 * 76.99387 * 25 6 5 27 27 H 1.08998 * 109.47265 * 298.78752 * 1 2 3 28 28 H 1.08998 * 109.46604 * 58.78258 * 1 2 3 29 29 H 1.08998 * 109.47044 * 178.77779 * 1 2 3 30 30 H 1.08997 * 109.46801 * 181.21760 * 3 2 1 31 31 H 1.08998 * 109.46764 * 301.21646 * 3 2 1 32 32 H 1.09001 * 109.47018 * 61.21597 * 3 2 1 33 33 H 1.08999 * 109.89206 * 314.39989 * 4 2 1 34 34 H 1.08994 * 109.89087 * 193.28728 * 4 2 1 35 35 H 1.09004 * 109.43685 * 179.17761 * 5 4 2 36 36 H 1.08998 * 109.44248 * 299.10984 * 5 4 2 37 37 H 1.08992 * 109.04627 * 43.56278 * 6 5 4 38 38 H 0.97002 * 119.99240 * 24.99596 * 7 6 5 39 39 H 1.09000 * 109.47214 * 299.99965 * 10 8 7 40 40 H 1.09001 * 109.47064 * 59.99720 * 10 8 7 41 41 H 1.07998 * 120.02496 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.96691 * 180.27165 * 14 13 12 43 43 H 1.08995 * 109.47118 * 240.02073 * 16 15 14 44 44 H 0.96706 * 113.99508 * 179.97438 * 17 16 15 45 45 H 1.07996 * 119.97807 * 179.97438 * 22 15 14 46 46 H 1.09005 * 109.44381 * 197.03978 * 25 6 5 47 47 H 1.09005 * 109.44792 * 316.93920 * 25 6 5 48 48 H 1.08994 * 109.89361 * 60.31969 * 26 25 6 49 49 H 1.09003 * 109.89145 * 181.42843 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7507 0.0000 4 6 2.5023 -0.9129 1.5064 5 6 2.2741 -2.4133 1.2619 6 6 3.0139 -2.8455 0.0001 7 7 3.1472 -4.3044 0.0000 8 6 4.1479 -4.8896 -0.6872 9 8 4.9379 -4.2085 -1.3061 10 6 4.2854 -6.3903 -0.6868 11 8 5.4134 -6.7656 -1.4797 12 6 5.6793 -8.0944 -1.5845 13 6 4.8749 -9.0172 -0.9332 14 6 5.1438 -10.3680 -1.0460 15 6 6.2203 -10.7995 -1.7984 16 6 6.5144 -12.2730 -1.9147 17 8 6.4533 -12.6639 -3.2878 18 14 5.2539 -13.2367 -0.9382 19 1 5.3171 -12.8304 0.4887 20 1 3.8963 -12.9592 -1.4722 21 1 5.5440 -14.6886 -1.0523 22 6 7.0281 -9.8815 -2.4441 23 6 6.7602 -8.5298 -2.3393 24 35 7.8645 -7.2747 -3.2230 25 6 2.2741 -2.4133 -1.2619 26 6 2.5023 -0.9129 -1.5063 27 1 -0.3634 0.4949 0.9006 28 1 -0.3632 0.5326 -0.8789 29 1 -0.3633 -1.0274 -0.0219 30 1 3.5900 1.7406 -0.0218 31 1 2.1241 2.2742 -0.8789 32 1 2.1596 2.2613 0.9007 33 1 1.9547 -0.5942 2.3933 34 1 3.5664 -0.7158 1.6356 35 1 2.6482 -2.9807 2.1141 36 1 1.2077 -2.6029 1.1396 37 1 4.0081 -2.3988 0.0000 38 1 2.5151 -4.8491 0.4947 39 1 4.4270 -6.7419 0.3351 40 1 3.3830 -6.8379 -1.1033 41 1 4.0364 -8.6808 -0.3416 42 1 4.5149 -11.0872 -0.5424 43 1 7.5108 -12.4767 -1.5229 44 1 6.6331 -13.6022 -3.4380 45 1 7.8688 -10.2211 -3.0309 46 1 2.6483 -2.9807 -2.1141 47 1 1.2076 -2.6031 -1.1403 48 1 3.5664 -0.7159 -1.6356 49 1 1.9547 -0.5942 -2.3933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_6201210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:54:34 Heat of formation + Delta-G solvation = -115.673071 kcal Electronic energy + Delta-G solvation = -28596.200383 eV Core-core repulsion = 24500.285075 eV Total energy + Delta-G solvation = -4095.915308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 415.077 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71227 -40.81827 -39.17370 -37.83119 -37.22715 -34.14198 -33.63773 -32.02678 -32.00043 -30.58616 -29.81054 -29.09344 -28.33192 -26.64333 -25.97176 -23.99367 -23.48314 -22.31477 -21.54807 -21.48717 -19.61551 -18.56955 -18.29663 -17.52553 -17.41163 -17.09255 -16.71536 -16.14119 -15.87849 -15.79206 -15.69627 -15.17797 -15.01421 -14.67253 -14.46924 -14.13651 -14.08829 -13.92357 -13.84503 -13.70845 -13.52753 -13.36015 -13.29885 -13.15338 -13.05727 -12.93853 -12.60217 -12.49932 -12.31517 -12.20173 -12.12960 -11.94269 -11.83955 -11.78462 -11.73947 -11.21746 -11.02364 -10.72114 -10.41682 -10.31942 -10.29773 -10.01301 -9.98540 -9.31864 -0.09674 0.10268 0.61167 1.19711 1.41083 1.46799 1.49316 1.55887 1.85222 1.93876 1.97630 2.04964 2.35117 2.51600 2.69607 3.38436 3.48488 3.63934 3.73562 3.79877 3.91668 3.99592 4.01252 4.07392 4.10716 4.22137 4.30274 4.39134 4.51516 4.54446 4.62657 4.66793 4.79642 4.81388 4.81681 4.84565 4.87438 4.89133 4.91725 4.94224 5.17181 5.21684 5.25002 5.27771 5.37196 5.44801 5.48435 5.51878 5.60403 5.70848 6.03620 6.48316 6.83291 7.16870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.061 2.939 3 C -0.468 4.468 4 C -0.410 4.410 5 C -0.111 4.111 6 C 0.137 3.863 7 N -0.708 5.708 8 C 0.509 3.491 9 O -0.568 6.568 10 C 0.031 3.969 11 O -0.304 6.304 12 C 0.147 3.853 13 C -0.190 4.190 14 C -0.071 4.071 15 C -0.116 4.116 16 C -0.084 4.084 17 O -0.565 6.565 18 Si 0.981 3.019 19 H -0.248 1.248 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.031 4.031 23 C -0.144 4.144 24 Br -0.051 7.051 25 C -0.116 4.116 26 C -0.425 4.425 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.421 0.579 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.178 0.822 42 H 0.151 0.849 43 H 0.095 0.905 44 H 0.399 0.601 45 H 0.144 0.856 46 H 0.036 0.964 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -4.466 7.133 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.253 2.747 3 C -0.574 4.574 4 C -0.496 4.496 5 C -0.149 4.149 6 C 0.033 3.967 7 N -0.362 5.362 8 C 0.295 3.705 9 O -0.446 6.446 10 C -0.046 4.046 11 O -0.216 6.216 12 C 0.099 3.901 13 C -0.209 4.209 14 C -0.089 4.089 15 C -0.117 4.117 16 C -0.193 4.193 17 O -0.374 6.374 18 Si 0.803 3.197 19 H -0.172 1.172 20 H -0.188 1.188 21 H -0.182 1.182 22 C -0.051 4.051 23 C -0.224 4.224 24 Br 0.034 6.966 25 C -0.154 4.154 26 C -0.509 4.509 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.259 0.741 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.195 0.805 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.249 0.751 45 H 0.162 0.838 46 H 0.055 0.945 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.556 -3.176 6.658 9.869 hybrid contribution 0.423 -0.626 -0.338 0.828 sum -6.133 -3.802 6.320 9.592 Atomic orbital electron populations 1.26151 1.20297 1.04943 1.04593 0.78621 0.66504 0.64664 0.64957 1.26322 1.06151 1.20435 1.04475 1.26277 1.06458 1.01496 1.15416 1.21465 1.01489 0.96722 0.95223 1.21086 1.00299 0.79176 0.96154 1.45843 1.30454 1.08200 1.51663 1.20508 0.81009 0.90041 0.78919 1.90784 1.43893 1.66136 1.43767 1.22874 0.90324 0.92478 0.98941 1.86250 1.47567 1.20217 1.67612 1.18782 0.93495 0.83281 0.94588 1.21487 1.02613 0.92480 1.04297 1.21216 0.95082 0.96151 0.96405 1.19506 0.96870 0.94871 1.00502 1.24841 1.09523 0.95056 0.89912 1.86469 1.94636 1.32760 1.23559 0.85264 0.77699 0.78302 0.78387 1.17177 1.18792 1.18243 1.20904 0.99127 0.88934 0.96116 1.21299 0.99596 0.94389 1.07090 1.96748 1.65066 1.57749 1.76998 1.21566 1.01173 0.96182 0.96528 1.26575 1.05604 1.02217 1.16488 0.90692 0.91564 0.90469 0.91888 0.91566 0.90798 0.88700 0.91067 0.90303 0.88805 0.91883 0.74114 0.85108 0.85374 0.80481 0.83192 0.88698 0.75080 0.83844 0.94529 0.89412 0.92319 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.56 8.65 113.37 0.98 3.55 16 2 Si 1.06 -6.07 11.59 68.60 0.80 -5.27 16 3 C -0.47 0.95 8.65 113.37 0.98 1.94 16 4 C -0.41 2.38 4.98 72.22 0.36 2.74 16 5 C -0.11 0.74 5.05 30.68 0.15 0.90 16 6 C 0.14 -0.13 2.03 44.68 0.09 -0.04 16 7 N -0.71 2.43 5.05 -444.05 -2.24 0.19 16 8 C 0.51 1.97 7.66 87.66 0.67 2.64 16 9 O -0.57 -9.15 16.17 16.01 0.26 -8.89 16 10 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 11 O -0.30 -2.18 9.01 -73.60 -0.66 -2.84 16 12 C 0.15 0.75 6.68 22.52 0.15 0.90 16 13 C -0.19 0.33 9.04 22.36 0.20 0.53 16 14 C -0.07 0.09 8.66 22.26 0.19 0.28 16 15 C -0.12 -0.19 5.42 -19.85 -0.11 -0.30 16 16 C -0.08 0.23 2.81 71.24 0.20 0.43 16 17 O -0.57 0.53 12.74 -148.98 -1.90 -1.37 16 18 Si 0.98 -4.46 25.07 68.60 1.72 -2.75 16 19 H -0.25 1.17 7.11 99.48 0.71 1.88 16 20 H -0.26 0.47 7.11 99.48 0.71 1.18 16 21 H -0.26 1.01 7.11 99.48 0.71 1.72 16 22 C -0.03 -0.16 9.35 22.27 0.21 0.05 16 23 C -0.14 -1.16 6.24 22.40 0.14 -1.02 16 24 Br -0.05 -0.57 33.16 -20.37 -0.68 -1.24 16 25 C -0.12 -0.05 5.18 30.68 0.16 0.11 16 26 C -0.43 -0.09 4.98 72.22 0.36 0.27 16 27 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 30 H 0.06 -0.04 7.96 -2.39 -0.02 -0.05 16 31 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 32 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 33 H 0.09 -0.75 7.99 -2.39 -0.02 -0.77 16 34 H 0.07 -0.26 7.99 -2.39 -0.02 -0.28 16 35 H 0.08 -0.60 8.13 -2.38 -0.02 -0.62 16 36 H 0.09 -1.00 7.69 -2.39 -0.02 -1.02 16 37 H 0.06 0.33 7.34 -2.39 -0.02 0.31 16 38 H 0.42 -5.01 8.58 -92.71 -0.80 -5.81 16 39 H 0.13 -1.30 7.65 -2.39 -0.02 -1.32 16 40 H 0.13 -1.20 7.67 -2.39 -0.02 -1.22 16 41 H 0.18 -1.81 6.30 -2.91 -0.02 -1.82 16 42 H 0.15 -0.88 4.87 -2.91 -0.01 -0.89 16 43 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 44 H 0.40 -3.94 8.74 -74.05 -0.65 -4.59 16 45 H 0.14 0.58 8.06 -2.91 -0.02 0.56 16 46 H 0.04 0.25 7.92 -2.38 -0.02 0.23 16 47 H 0.09 -0.39 7.69 -2.38 -0.02 -0.41 16 48 H 0.06 0.24 7.99 -2.39 -0.02 0.22 16 49 H 0.07 0.01 7.99 -2.39 -0.02 -0.01 16 Total: 0.00 -26.62 413.06 2.69 -23.92 By element: Atomic # 1 Polarization: -15.29 SS G_CDS: 0.28 Total: -15.01 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.12 Total: 13.26 kcal Atomic # 7 Polarization: 2.43 SS G_CDS: -2.24 Total: 0.19 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -2.30 Total: -13.10 kcal Atomic # 14 Polarization: -10.53 SS G_CDS: 2.51 Total: -8.02 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.68 Total: -1.24 kcal Total: -26.62 2.69 -23.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_6201210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.749 kcal (2) G-P(sol) polarization free energy of solvation -26.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds