Wall clock time and date at job start Tue Mar 9 2021 18:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86296 * 110.00315 * 2 1 4 4 C 1.87376 * 109.94395 * 121.22277 * 2 1 3 5 5 C 1.53715 * 107.28451 * 164.90400 * 4 2 1 6 6 C 1.52523 * 109.64041 * 300.87210 * 5 4 2 7 7 N 1.46499 * 109.04541 * 197.55226 * 6 5 4 8 8 C 1.34777 * 120.00199 * 155.00215 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 N 1.46491 * 109.46957 * 179.72354 * 10 8 7 12 12 C 1.36837 * 125.06218 * 265.02370 * 11 10 8 13 13 C 1.34236 * 109.93878 * 179.97438 * 12 11 10 14 14 C 1.50701 * 126.50124 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47168 * 104.97293 * 14 13 12 16 16 Si 1.86306 * 109.46996 * 344.97511 * 14 13 12 17 17 H 1.48500 * 109.46895 * 59.99992 * 16 14 13 18 18 H 1.48497 * 109.47171 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46978 * 300.00156 * 16 14 13 20 20 C 1.46491 * 107.00070 * 359.97438 * 13 12 11 21 21 C 1.39590 * 134.03844 * 180.02562 * 20 13 12 22 22 C 1.36663 * 119.76365 * 179.97438 * 21 20 13 23 23 C 1.38792 * 120.53125 * 359.97438 * 22 21 20 24 24 C 1.37792 * 120.65995 * 0.02562 * 23 22 21 25 25 C 1.37689 * 125.06676 * 84.71591 * 11 10 8 26 26 C 1.52526 * 111.65510 * 76.98597 * 6 5 4 27 27 C 1.53710 * 109.64247 * 283.01051 * 26 6 5 28 28 H 1.08998 * 109.47113 * 298.78293 * 1 2 3 29 29 H 1.08999 * 109.46468 * 58.77874 * 1 2 3 30 30 H 1.08995 * 109.47040 * 178.78118 * 1 2 3 31 31 H 1.08994 * 109.47129 * 181.21778 * 3 2 1 32 32 H 1.08999 * 109.47217 * 301.21921 * 3 2 1 33 33 H 1.09002 * 109.46842 * 61.22092 * 3 2 1 34 34 H 1.08997 * 109.90024 * 45.45487 * 4 2 1 35 35 H 1.09011 * 109.89441 * 284.34608 * 4 2 1 36 36 H 1.08999 * 109.44436 * 180.82188 * 5 4 2 37 37 H 1.08996 * 109.44081 * 60.92193 * 5 4 2 38 38 H 1.09005 * 109.04615 * 316.50359 * 6 5 4 39 39 H 0.97000 * 119.99484 * 334.99312 * 7 6 5 40 40 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 41 41 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 42 42 H 1.07997 * 125.03075 * 359.96169 * 12 11 10 43 43 H 1.08998 * 109.47031 * 224.97783 * 14 13 12 44 44 H 0.96697 * 114.00051 * 300.00309 * 15 14 13 45 45 H 1.07997 * 120.12048 * 0.02562 * 21 20 13 46 46 H 1.07999 * 119.73669 * 180.02562 * 22 21 20 47 47 H 1.07997 * 119.66705 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.10843 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.43979 * 43.06508 * 26 6 5 50 50 H 1.09003 * 109.44103 * 162.95712 * 26 6 5 51 51 H 1.08993 * 109.89681 * 299.68206 * 27 26 6 52 52 H 1.09001 * 109.89231 * 178.57047 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5022 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2619 6 6 4.1432 -2.0548 0.0000 7 7 5.4684 -2.6792 0.0000 8 6 5.6760 -3.8198 -0.6874 9 8 4.7655 -4.3295 -1.3056 10 6 7.0378 -4.4654 -0.6823 11 7 7.0024 -5.6861 -1.4913 12 6 6.7940 -6.9472 -1.0027 13 6 6.8214 -7.8375 -2.0070 14 6 6.6340 -9.3281 -1.8888 15 8 5.3333 -9.6836 -2.3618 16 14 6.8062 -9.8361 -0.1046 17 1 5.7765 -9.1416 0.7094 18 1 6.6221 -11.3051 0.0118 19 1 8.1579 -9.4666 0.3870 20 6 7.0668 -7.0852 -3.2398 21 6 7.1989 -7.4403 -4.5832 22 6 7.4305 -6.4735 -5.5209 23 6 7.5350 -5.1406 -5.1484 24 6 7.4078 -4.7680 -3.8280 25 6 7.1679 -5.7349 -2.8573 26 6 3.9901 -1.2118 -1.2619 27 6 2.5022 -0.9130 -1.5063 28 1 -0.3633 0.4948 0.9007 29 1 -0.3632 0.5327 -0.8789 30 1 -0.3633 -1.0274 -0.0219 31 1 3.5900 1.7405 -0.0218 32 1 2.1241 2.2742 -0.8788 33 1 2.1597 2.2612 0.9008 34 1 1.9530 -1.8456 1.6356 35 1 2.3900 -0.2895 2.3933 36 1 4.3953 -1.7576 2.1140 37 1 4.5332 -0.2747 1.1403 38 1 3.3825 -2.8355 -0.0008 39 1 6.1965 -2.2716 0.4946 40 1 7.7693 -3.7737 -1.1000 41 1 7.3173 -4.7156 0.3410 42 1 6.6318 -7.1902 0.0370 43 1 7.3898 -9.8378 -2.4862 44 1 4.6099 -9.2656 -1.8750 45 1 7.1176 -8.4753 -4.8807 46 1 7.5323 -6.7487 -6.5603 47 1 7.7177 -4.3880 -5.9011 48 1 7.4910 -3.7283 -3.5480 49 1 4.5332 -0.2747 -1.1403 50 1 4.3953 -1.7575 -2.1141 51 1 1.9530 -1.8455 -1.6356 52 1 2.3900 -0.2894 -2.3933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:58:10 Heat of formation + Delta-G solvation = -47.046748 kcal Electronic energy + Delta-G solvation = -30433.599753 eV Core-core repulsion = 26521.744689 eV Total energy + Delta-G solvation = -3911.855064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55387 -40.88463 -38.23540 -37.97633 -37.46564 -34.36949 -33.73845 -32.03329 -31.43640 -30.25867 -29.34474 -28.94664 -28.35704 -26.67688 -25.42296 -23.76191 -23.51393 -22.71909 -21.56071 -21.53118 -20.66588 -18.67245 -18.39587 -17.85688 -17.41363 -16.91726 -16.46178 -16.40351 -16.09388 -15.97174 -15.65267 -15.39395 -15.11375 -14.82655 -14.73495 -14.53257 -14.42688 -14.07769 -13.94155 -13.77165 -13.68681 -13.41436 -13.33894 -13.22030 -13.16682 -13.07163 -12.95881 -12.71453 -12.57863 -12.51528 -12.34059 -12.16903 -12.15561 -11.91360 -11.76513 -11.69033 -11.16930 -10.75261 -10.57462 -10.43585 -10.31140 -10.28278 -10.02969 -9.17483 -8.64227 0.12610 0.63168 1.21681 1.37995 1.45945 1.48621 1.57927 1.68709 1.82468 1.93963 1.94714 2.01771 2.22707 2.66704 2.94595 3.55867 3.64490 3.65459 3.72209 3.77376 3.81525 4.02579 4.05591 4.11586 4.19683 4.21248 4.29337 4.36361 4.50798 4.51384 4.59235 4.64785 4.71113 4.77011 4.78008 4.78982 4.81772 4.84527 4.86662 4.89099 4.89709 5.13261 5.14276 5.22672 5.24817 5.36001 5.45418 5.49531 5.49960 5.58003 5.65640 5.68341 5.73093 5.74364 6.17352 6.22380 6.49149 6.74606 7.15908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.059 2.941 3 C -0.452 4.452 4 C -0.410 4.410 5 C -0.112 4.112 6 C 0.138 3.862 7 N -0.710 5.710 8 C 0.488 3.512 9 O -0.570 6.570 10 C 0.086 3.914 11 N -0.467 5.467 12 C 0.062 3.938 13 C -0.217 4.217 14 C -0.053 4.053 15 O -0.560 6.560 16 Si 0.994 3.006 17 H -0.248 1.248 18 H -0.273 1.273 19 H -0.249 1.249 20 C -0.115 4.115 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.107 4.107 24 C -0.136 4.136 25 C 0.091 3.909 26 C -0.114 4.114 27 C -0.424 4.424 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.420 0.580 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.192 0.808 43 H 0.110 0.890 44 H 0.384 0.616 45 H 0.124 0.876 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.130 0.870 49 H 0.085 0.915 50 H 0.035 0.965 51 H 0.057 0.943 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 6.573 6.709 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.251 2.749 3 C -0.560 4.560 4 C -0.496 4.496 5 C -0.149 4.149 6 C 0.033 3.967 7 N -0.363 5.363 8 C 0.274 3.726 9 O -0.449 6.449 10 C -0.038 4.038 11 N -0.149 5.149 12 C -0.064 4.064 13 C -0.224 4.224 14 C -0.163 4.163 15 O -0.366 6.366 16 Si 0.815 3.185 17 H -0.171 1.171 18 H -0.198 1.198 19 H -0.172 1.172 20 C -0.119 4.119 21 C -0.104 4.104 22 C -0.173 4.173 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.014 4.014 26 C -0.152 4.152 27 C -0.508 4.508 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.258 0.742 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.208 0.792 43 H 0.128 0.872 44 H 0.232 0.768 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.163 0.837 48 H 0.148 0.852 49 H 0.104 0.896 50 H 0.053 0.947 51 H 0.076 0.924 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.167 5.878 6.915 9.613 hybrid contribution -0.412 0.381 -0.504 0.754 sum 2.755 6.259 6.412 9.374 Atomic orbital electron populations 1.26323 1.22478 1.04103 1.04494 0.78651 0.65000 0.66256 0.65034 1.26153 1.06832 1.18414 1.04610 1.26267 0.99556 1.08429 1.15331 1.21459 0.97646 1.00461 0.95352 1.21030 0.84343 0.95380 0.95919 1.45996 1.13961 1.24792 1.51566 1.21447 0.91113 0.81291 0.78777 1.90798 1.45874 1.64254 1.43935 1.21990 0.95121 0.86408 1.00300 1.43423 1.60817 1.06149 1.04543 1.21987 1.02029 0.82665 0.99683 1.20845 1.13688 0.96217 0.91673 1.24541 0.87489 0.90951 1.13296 1.86458 1.15161 1.71972 1.63055 0.85141 0.81166 0.79478 0.72704 1.17099 1.19766 1.17241 1.19331 1.05962 0.92551 0.94088 1.20485 0.98716 1.00092 0.91063 1.20931 1.03202 0.93039 1.00138 1.21132 0.99401 0.96758 0.95277 1.20226 1.05586 0.97890 0.91960 1.18418 1.03557 0.95464 0.84008 1.21536 0.97037 1.00086 0.96554 1.26559 0.99920 1.07886 1.16416 0.90784 0.91567 0.91875 0.90495 0.91553 0.90687 0.91063 0.88760 0.90307 0.88992 0.92040 0.74241 0.83926 0.82138 0.79150 0.87230 0.76814 0.85850 0.84422 0.83749 0.85239 0.89618 0.94662 0.92435 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.12 8.65 113.37 0.98 2.10 16 2 Si 1.06 -6.47 11.59 68.60 0.80 -5.67 16 3 C -0.45 2.69 8.65 113.37 0.98 3.67 16 4 C -0.41 2.61 4.98 72.22 0.36 2.97 16 5 C -0.11 0.83 5.05 30.68 0.15 0.98 16 6 C 0.14 -0.30 2.03 44.68 0.09 -0.21 16 7 N -0.71 3.67 5.05 -444.03 -2.24 1.42 16 8 C 0.49 0.48 7.65 87.66 0.67 1.15 16 9 O -0.57 -7.31 16.09 -3.04 -0.05 -7.36 16 10 C 0.09 -0.45 6.48 85.64 0.56 0.11 16 11 N -0.47 -1.71 2.27 -520.01 -1.18 -2.89 16 12 C 0.06 0.21 9.89 83.00 0.82 1.03 16 13 C -0.22 -1.51 5.57 -18.63 -0.10 -1.61 16 14 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 15 O -0.56 -3.88 12.88 -148.98 -1.92 -5.80 16 16 Si 0.99 -0.07 26.08 68.60 1.79 1.72 16 17 H -0.25 0.34 7.03 99.48 0.70 1.04 16 18 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 19 H -0.25 0.10 7.11 99.48 0.71 0.81 16 20 C -0.12 -1.26 6.35 -20.20 -0.13 -1.39 16 21 C -0.09 -0.85 10.05 22.23 0.22 -0.63 16 22 C -0.15 -1.12 9.97 22.03 0.22 -0.90 16 23 C -0.11 -0.63 10.01 22.30 0.22 -0.41 16 24 C -0.14 -0.92 10.00 22.37 0.22 -0.69 16 25 C 0.09 0.80 6.80 39.03 0.27 1.06 16 26 C -0.11 0.05 5.18 30.68 0.16 0.21 16 27 C -0.42 0.14 4.98 72.22 0.36 0.50 16 28 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 29 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 34 H 0.07 -0.31 7.99 -2.39 -0.02 -0.32 16 35 H 0.09 -0.78 7.99 -2.38 -0.02 -0.80 16 36 H 0.08 -0.67 8.13 -2.39 -0.02 -0.69 16 37 H 0.09 -1.01 7.69 -2.39 -0.02 -1.03 16 38 H 0.06 0.25 7.34 -2.38 -0.02 0.23 16 39 H 0.42 -5.48 8.58 -92.71 -0.80 -6.28 16 40 H 0.14 -1.46 8.14 -2.38 -0.02 -1.48 16 41 H 0.16 -2.13 8.12 -2.39 -0.02 -2.15 16 42 H 0.19 -0.63 6.29 -2.91 -0.02 -0.65 16 43 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 44 H 0.38 0.54 8.70 -74.06 -0.64 -0.11 16 45 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 48 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 49 H 0.09 -0.42 7.69 -2.39 -0.02 -0.44 16 50 H 0.03 0.21 7.92 -2.39 -0.02 0.19 16 51 H 0.06 0.20 7.99 -2.39 -0.02 0.19 16 52 H 0.07 -0.02 7.99 -2.39 -0.02 -0.04 16 Total: 0.00 -25.83 419.11 3.69 -22.14 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: 0.22 Total: -11.48 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.27 Total: 7.93 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -3.42 Total: -1.47 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.97 Total: -13.16 kcal Atomic # 14 Polarization: -6.54 SS G_CDS: 2.58 Total: -3.95 kcal Total: -25.83 3.69 -22.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.910 kcal (2) G-P(sol) polarization free energy of solvation -25.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds