Wall clock time and date at job start Tue Mar 9 2021 19:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99801 * 2 1 4 4 O 1.20823 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99893 * 179.97438 * 3 2 1 6 6 C 1.52991 * 109.47186 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47419 * 55.00025 * 6 5 3 8 8 C 1.53003 * 109.47367 * 175.00050 * 6 5 3 9 9 C 1.53000 * 109.47420 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46867 * 300.00012 * 9 8 6 11 11 H 1.08994 * 109.47266 * 300.00014 * 10 9 8 12 12 C 1.53000 * 109.46867 * 179.97438 * 10 9 8 13 13 N 1.46503 * 109.47241 * 175.00093 * 12 10 9 14 14 C 1.34772 * 120.00224 * 179.97438 * 13 12 10 15 15 O 1.21697 * 119.99647 * 0.02562 * 14 13 12 16 16 C 1.46673 * 120.00165 * 179.97438 * 14 13 12 17 17 C 1.37876 * 126.23627 * 180.02562 * 16 14 13 18 18 C 1.50698 * 126.45314 * 359.95591 * 17 16 14 19 19 C 1.39834 * 107.08506 * 179.97438 * 17 16 14 20 20 C 1.35455 * 107.86588 * 359.97438 * 19 17 16 21 21 C 1.50700 * 125.55890 * 180.02562 * 20 19 17 22 22 O 1.42894 * 109.47144 * 65.01022 * 21 20 19 23 23 Si 1.86309 * 109.46726 * 185.00321 * 21 20 19 24 24 N 1.35530 * 108.87453 * 0.02562 * 20 19 17 25 25 C 1.52998 * 109.47174 * 60.00146 * 10 9 8 26 26 C 1.53000 * 109.47104 * 299.99708 * 25 10 9 27 27 H 1.09006 * 109.47491 * 299.99789 * 1 2 3 28 28 H 1.09004 * 109.47346 * 60.00094 * 1 2 3 29 29 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46573 * 60.00217 * 5 3 2 31 31 H 1.09001 * 109.47064 * 300.00257 * 5 3 2 32 32 H 1.09003 * 109.46317 * 60.00125 * 8 6 5 33 33 H 1.08997 * 109.46995 * 300.00178 * 8 6 5 34 34 H 1.08988 * 109.47133 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47051 * 59.99750 * 9 8 6 36 36 H 1.08996 * 109.47353 * 54.99766 * 12 10 9 37 37 H 1.09004 * 109.47293 * 295.00052 * 12 10 9 38 38 H 0.97001 * 119.99249 * 359.97438 * 13 12 10 39 39 H 1.09000 * 109.47302 * 270.04964 * 18 17 16 40 40 H 1.09000 * 109.47256 * 30.05711 * 18 17 16 41 41 H 1.09000 * 109.46500 * 150.04911 * 18 17 16 42 42 H 1.07998 * 126.06433 * 180.26789 * 19 17 16 43 43 H 1.08995 * 109.47667 * 305.00374 * 21 20 19 44 44 H 0.96707 * 114.00590 * 179.97438 * 22 21 20 45 45 H 1.48500 * 109.99853 * 178.68534 * 23 21 20 46 46 H 1.48506 * 109.99794 * 300.00217 * 23 21 20 47 47 H 0.96994 * 125.67936 * 179.97438 * 24 20 19 48 48 H 1.09001 * 109.47465 * 59.99820 * 25 10 9 49 49 H 1.08998 * 109.47518 * 179.97438 * 25 10 9 50 50 H 1.08994 * 109.47189 * 300.00042 * 26 25 10 51 51 H 1.09004 * 109.47183 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 1 3.5375 3.2581 0.8411 8 6 5.5227 2.8238 0.1261 9 6 5.9565 4.2910 0.1260 10 6 5.5169 4.9526 -1.1817 11 1 5.9795 4.4369 -2.0232 12 6 5.9501 6.4200 -1.1816 13 7 5.6361 7.0221 -2.4797 14 6 5.9301 8.3168 -2.7109 15 8 6.4569 8.9857 -1.8414 16 6 5.6162 8.9194 -4.0108 17 6 5.8598 10.2240 -4.3845 18 6 6.4957 11.2947 -3.5358 19 6 5.4051 10.3665 -5.6991 20 6 4.9034 9.1729 -6.0970 21 6 4.3069 8.8800 -7.4496 22 8 5.3179 9.0004 -8.4522 23 14 3.6213 7.1477 -7.4639 24 7 5.0255 8.2851 -5.0803 25 6 3.9943 4.8709 -1.3080 26 6 3.5606 3.4037 -1.3079 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9563 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.9852 2.3077 -0.7153 33 1 5.8358 2.3528 1.0579 34 1 7.0411 4.3492 0.2155 35 1 5.4939 4.8067 0.9675 36 1 7.0235 6.4820 -1.0025 37 1 5.4190 6.9556 -0.3947 38 1 5.2165 6.4887 -3.1728 39 1 5.7223 11.8255 -2.9806 40 1 7.1952 10.8364 -2.8366 41 1 7.0298 11.9965 -4.1763 42 1 5.4507 11.2671 -6.2935 43 1 3.5054 9.5896 -7.6547 44 1 5.0044 8.8247 -9.3501 45 1 3.0019 6.8575 -8.7819 46 1 4.7045 6.1705 -7.1855 47 1 4.7434 7.3574 -5.1024 48 1 3.5317 5.3866 -0.4665 49 1 3.6811 5.3426 -2.2394 50 1 4.0231 2.8880 -2.1494 51 1 2.4759 3.3454 -1.3983 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16902906_13940406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:06:19 Heat of formation + Delta-G solvation = -128.111486 kcal Electronic energy + Delta-G solvation = -31293.303612 eV Core-core repulsion = 26966.152699 eV Total energy + Delta-G solvation = -4327.150914 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50815 -41.65430 -40.48549 -39.53644 -37.92232 -37.54227 -36.17330 -34.00303 -33.37122 -31.82442 -31.59474 -30.14538 -28.42173 -28.20023 -26.93937 -25.37467 -23.89896 -22.71416 -22.08210 -21.48298 -21.37590 -20.89840 -20.20554 -19.43505 -18.73373 -18.55134 -17.61669 -17.47821 -16.87500 -16.84431 -16.56498 -16.23971 -15.87667 -15.43462 -15.36118 -15.15344 -15.08716 -14.87235 -14.72150 -14.35959 -14.33107 -14.10183 -13.85349 -13.66815 -13.52750 -13.46455 -13.35453 -13.18899 -13.01562 -12.97484 -12.79470 -12.65514 -12.53502 -12.17258 -12.10209 -11.98824 -11.79586 -11.65024 -11.54332 -11.26373 -10.91558 -10.88910 -10.67065 -10.12576 -9.69679 -9.05845 -5.29834 0.41926 0.94827 1.20636 1.26297 1.58657 1.69519 1.71884 1.96162 2.14008 2.46818 3.21967 3.39659 3.55498 3.57737 3.65548 3.75647 3.82646 3.87492 3.99622 4.12952 4.15534 4.18217 4.21439 4.31022 4.33219 4.34494 4.38489 4.39459 4.46195 4.47260 4.55130 4.57342 4.67029 4.78289 4.83331 4.86158 4.96142 5.02263 5.04438 5.10518 5.11138 5.12218 5.16610 5.28353 5.29663 5.35807 5.44106 5.49912 5.56008 5.77508 6.01016 6.19875 6.33112 6.50036 6.75117 7.22702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.502 6.502 5 C -0.112 4.112 6 C -0.077 4.077 7 H 0.082 0.918 8 C -0.113 4.113 9 C -0.110 4.110 10 C -0.101 4.101 11 H 0.077 0.923 12 C 0.124 3.876 13 N -0.733 5.733 14 C 0.590 3.410 15 O -0.521 6.521 16 C -0.051 4.051 17 C -0.068 4.068 18 C -0.092 4.092 19 C -0.170 4.170 20 C 0.061 3.939 21 C -0.047 4.047 22 O -0.529 6.529 23 Si 0.663 3.337 24 N -0.535 5.535 25 C -0.112 4.112 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.146 0.854 43 H 0.092 0.908 44 H 0.384 0.616 45 H -0.247 1.247 46 H -0.249 1.249 47 H 0.410 0.590 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -5.182 -1.566 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.390 6.390 5 C -0.150 4.150 6 C -0.096 4.096 7 H 0.101 0.899 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.120 4.120 11 H 0.095 0.905 12 C 0.001 3.999 13 N -0.385 5.385 14 C 0.378 3.622 15 O -0.397 6.397 16 C -0.163 4.163 17 C -0.077 4.077 18 C -0.149 4.149 19 C -0.195 4.195 20 C -0.055 4.055 21 C -0.158 4.158 22 O -0.336 6.336 23 Si 0.562 3.438 24 N -0.135 5.135 25 C -0.150 4.150 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.164 0.836 43 H 0.110 0.890 44 H 0.232 0.768 45 H -0.170 1.170 46 H -0.174 1.174 47 H 0.249 0.751 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.702 -5.234 -0.735 5.936 hybrid contribution -0.252 -0.452 -1.676 1.754 sum -2.955 -5.685 -2.410 6.846 Atomic orbital electron populations 1.23296 0.75995 1.03918 1.02666 1.86514 1.23744 1.33621 1.84023 1.23869 0.92355 0.81340 0.72283 1.90661 1.67293 1.36145 1.44889 1.21534 0.87439 0.99957 1.06030 1.21052 0.95950 0.92653 0.99918 0.89922 1.21566 0.94273 0.96723 1.02484 1.21469 1.01240 0.95342 0.96774 1.21470 0.96726 0.94316 0.99490 0.90467 1.21466 1.01173 0.92621 0.84609 1.45909 1.64154 1.11312 1.17081 1.16986 0.78430 0.81319 0.85437 1.90844 1.42824 1.61458 1.44543 1.20167 1.12065 0.94412 0.89662 1.20022 1.00202 0.92677 0.94803 1.20383 1.00426 0.95608 0.98506 1.20603 1.05625 0.97648 0.95640 1.19408 1.06445 0.90361 0.89268 1.24086 0.93560 1.12302 0.85813 1.86622 1.36430 1.92026 1.18568 0.95696 0.83839 0.75079 0.89176 1.41918 1.48417 1.11641 1.11554 1.21576 0.94364 0.96803 1.02233 1.21742 1.02495 0.95303 0.96424 0.91765 0.91805 0.87966 0.87591 0.87465 0.91499 0.91271 0.91202 0.91225 0.91053 0.90900 0.77359 0.91198 0.90053 0.91746 0.83629 0.89015 0.76765 1.17043 1.17393 0.75057 0.91274 0.92169 0.92259 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.27 10.57 -39.24 -0.41 -0.68 16 3 C 0.46 0.33 7.68 36.01 0.28 0.61 16 4 O -0.50 -1.64 13.72 -18.75 -0.26 -1.90 16 5 C -0.11 0.26 5.29 -27.88 -0.15 0.11 16 6 C -0.08 0.15 1.84 -90.62 -0.17 -0.02 16 7 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 8 C -0.11 0.34 5.20 -26.73 -0.14 0.20 16 9 C -0.11 0.28 5.20 -26.73 -0.14 0.14 16 10 C -0.10 0.24 2.23 -90.62 -0.20 0.04 16 11 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 12 C 0.12 -0.06 5.06 -4.04 -0.02 -0.08 16 13 N -0.73 0.06 5.28 -61.62 -0.33 -0.27 16 14 C 0.59 1.91 7.79 -12.86 -0.10 1.81 16 15 O -0.52 -3.39 14.80 5.19 0.08 -3.31 16 16 C -0.05 -0.14 7.06 -81.98 -0.58 -0.72 16 17 C -0.07 -0.24 6.21 -104.16 -0.65 -0.89 16 18 C -0.09 -0.27 9.83 36.00 0.35 0.08 16 19 C -0.17 -0.43 10.66 -39.98 -0.43 -0.86 16 20 C 0.06 0.07 6.13 -81.95 -0.50 -0.43 16 21 C -0.05 0.05 2.98 36.01 0.11 0.16 16 22 O -0.53 -0.12 12.86 -35.23 -0.45 -0.58 16 23 Si 0.66 -1.70 30.98 -169.99 -5.27 -6.96 16 24 N -0.53 -0.16 5.47 -5.69 -0.03 -0.19 16 25 C -0.11 0.22 5.08 -26.73 -0.14 0.08 16 26 C -0.12 0.19 4.95 -26.73 -0.13 0.06 16 27 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 28 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16 29 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 30 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 31 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 32 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 33 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 34 H 0.07 -0.18 8.14 -51.94 -0.42 -0.60 16 35 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.39 -1.00 6.78 -40.82 -0.28 -1.28 16 39 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 0.36 6.48 -51.93 -0.34 0.03 16 41 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 43 H 0.09 -0.27 7.96 -51.93 -0.41 -0.68 16 44 H 0.38 -1.54 8.74 45.56 0.40 -1.14 16 45 H -0.25 0.13 7.11 56.52 0.40 0.53 16 46 H -0.25 0.00 7.11 56.52 0.40 0.40 16 47 H 0.41 -1.02 6.00 -40.82 -0.24 -1.26 16 48 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 49 H 0.06 -0.15 7.18 -51.93 -0.37 -0.53 16 50 H 0.06 -0.13 8.14 -51.93 -0.42 -0.56 16 51 H 0.08 0.04 5.96 -51.93 -0.31 -0.27 16 LS Contribution 406.98 15.07 6.13 6.13 Total: 0.00 -9.68 406.98 -10.42 -20.10 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: -8.35 Total: -13.67 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.53 Total: 1.33 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -0.36 Total: -0.46 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.05 Total: -6.47 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: -5.27 Total: -6.96 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -9.68 -10.42 -20.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16902906_13940406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.011 kcal (2) G-P(sol) polarization free energy of solvation -9.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds