Wall clock time and date at job start Tue Mar 9 2021 19:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00362 * 2 1 4 4 O 1.20826 * 119.99584 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47190 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.46796 * 55.00205 * 6 5 3 8 8 C 1.52999 * 109.47131 * 175.00102 * 6 5 3 9 9 C 1.53004 * 109.46914 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47217 * 299.99954 * 9 8 6 11 11 H 1.09006 * 109.46999 * 300.00157 * 10 9 8 12 12 C 1.52997 * 109.47469 * 180.02562 * 10 9 8 13 13 N 1.46499 * 109.47555 * 175.00230 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.53038 * 109.32677 * 180.02562 * 16 14 13 18 18 C 1.53472 * 108.60631 * 190.02149 * 17 16 14 19 19 N 1.47030 * 107.50762 * 61.18780 * 18 17 16 20 20 C 1.38928 * 118.88702 * 316.24690 * 19 18 17 21 21 C 1.31112 * 121.84302 * 13.33704 * 20 19 18 22 22 C 1.50701 * 118.54168 * 179.57480 * 21 20 19 23 23 O 1.42908 * 109.46949 * 250.01921 * 22 21 20 24 24 Si 1.86295 * 109.47188 * 10.01962 * 22 21 20 25 25 C 1.52999 * 109.47141 * 60.00185 * 10 9 8 26 26 C 1.52999 * 109.47469 * 295.00343 * 6 5 3 27 27 H 1.09005 * 109.46624 * 59.99858 * 1 2 3 28 28 H 1.08998 * 109.47749 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47336 * 300.00737 * 1 2 3 30 30 H 1.09001 * 109.46966 * 60.00215 * 5 3 2 31 31 H 1.08997 * 109.47492 * 300.00163 * 5 3 2 32 32 H 1.08992 * 109.47274 * 60.00431 * 8 6 5 33 33 H 1.09003 * 109.47550 * 300.00154 * 8 6 5 34 34 H 1.09006 * 109.47119 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47411 * 60.00264 * 9 8 6 36 36 H 1.08998 * 109.47382 * 54.99791 * 12 10 9 37 37 H 1.09002 * 109.47216 * 295.00228 * 12 10 9 38 38 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 39 39 H 1.09004 * 109.32381 * 299.72044 * 16 14 13 40 40 H 1.08999 * 109.62414 * 309.88599 * 17 16 14 41 41 H 1.08996 * 109.62653 * 70.44678 * 17 16 14 42 42 H 1.08995 * 109.96550 * 301.65628 * 18 17 16 43 43 H 1.08998 * 109.87165 * 180.66777 * 18 17 16 44 44 H 0.97000 * 120.55539 * 136.22270 * 19 18 17 45 45 H 1.07991 * 119.07329 * 193.31764 * 20 19 18 46 46 H 1.08997 * 109.47024 * 130.02510 * 22 21 20 47 47 H 0.96704 * 113.99434 * 60.00527 * 23 22 21 48 48 H 1.48495 * 110.00105 * 58.68395 * 24 22 21 49 49 H 1.48507 * 110.00171 * 180.02562 * 24 22 21 50 50 H 1.08998 * 109.46866 * 60.00071 * 25 10 9 51 51 H 1.09003 * 109.47088 * 180.02562 * 25 10 9 52 52 H 1.08998 * 109.47183 * 300.00029 * 26 6 5 53 53 H 1.09006 * 109.46848 * 59.99693 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 1 3.5376 3.2580 0.8412 8 6 5.5228 2.8235 0.1261 9 6 5.9566 4.2908 0.1260 10 6 5.5171 4.9524 -1.1817 11 1 5.9797 4.4367 -2.0232 12 6 5.9514 6.4195 -1.1821 13 7 5.6373 7.0214 -2.4803 14 6 5.9332 8.3157 -2.7123 15 8 6.4591 8.9821 -1.8461 16 6 5.6044 8.9365 -4.0455 17 6 6.0425 10.4029 -4.0432 18 6 5.4802 11.0839 -5.2984 19 7 4.0140 11.0007 -5.2274 20 6 3.4278 9.8033 -4.8368 21 6 4.1255 8.8380 -4.2887 22 6 3.4119 7.5737 -3.8844 23 8 3.3630 7.4895 -2.4586 24 14 1.6779 7.5946 -4.5650 25 6 3.9945 4.8708 -1.3080 26 6 3.5608 3.4031 -1.3081 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 3.9564 0.7804 -0.8892 31 1 3.9557 0.7808 0.8908 32 1 5.9853 2.3075 -0.7152 33 1 5.8360 2.3525 1.0579 34 1 7.0414 4.3489 0.2155 35 1 5.4941 4.8065 0.9675 36 1 7.0249 6.4807 -1.0035 37 1 5.4211 6.9557 -0.3952 38 1 5.2170 6.4882 -3.1731 39 1 6.1354 8.4019 -4.8331 40 1 5.6575 10.8986 -3.1521 41 1 7.1309 10.4598 -4.0556 42 1 5.8368 10.5709 -6.1915 43 1 5.7904 12.1285 -5.3236 44 1 3.4652 11.7691 -5.4493 45 1 2.3678 9.6638 -4.9887 46 1 3.9476 6.7114 -4.2810 47 1 2.8996 8.2261 -2.0368 48 1 1.7145 7.7140 -6.0447 49 1 0.9632 6.3533 -4.1727 50 1 3.5320 5.3866 -0.4664 51 1 3.6815 5.3418 -2.2398 52 1 4.0233 2.8870 -2.1494 53 1 2.4760 3.3449 -1.3980 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16902906_15608500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:06:29 Heat of formation + Delta-G solvation = -133.348973 kcal Electronic energy + Delta-G solvation = -33635.010924 eV Core-core repulsion = 29280.321417 eV Total energy + Delta-G solvation = -4354.689507 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.208 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70497 -41.44209 -39.87149 -39.00804 -37.69483 -37.46128 -35.86723 -33.83573 -33.10703 -32.64040 -31.59345 -30.09928 -28.31907 -27.22074 -26.26494 -24.81318 -23.71996 -23.14820 -22.42318 -21.51487 -21.24019 -20.66193 -19.33203 -18.82994 -18.58226 -17.95194 -17.62664 -17.48064 -17.29169 -16.80006 -16.38111 -16.11890 -15.85189 -15.54725 -15.29798 -15.19661 -14.99672 -14.87650 -14.72960 -14.41841 -14.39298 -14.12323 -14.03284 -13.81031 -13.49256 -13.32773 -13.10076 -13.00402 -12.91057 -12.67905 -12.57544 -12.43839 -12.13974 -11.99818 -11.91943 -11.84930 -11.77045 -11.75143 -11.63268 -11.37396 -11.35008 -11.04169 -10.77460 -10.61776 -10.21758 -9.66582 -8.40506 -4.96448 1.16962 1.33016 1.41154 1.65640 1.78187 1.90948 2.03103 2.46011 2.69708 3.57366 3.62249 3.70022 3.73297 3.80542 3.89188 3.91945 4.03432 4.05069 4.19670 4.23119 4.24289 4.26879 4.35000 4.38111 4.41723 4.51060 4.53380 4.57119 4.60071 4.64442 4.66827 4.67051 4.71489 4.73260 4.81222 4.84506 4.87241 4.97011 5.04555 5.16290 5.22734 5.24603 5.27975 5.30048 5.34209 5.38706 5.48646 5.50058 5.55985 5.63103 5.71351 6.34503 6.72177 6.75070 6.87935 7.00337 7.46174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.535 6.535 5 C -0.108 4.108 6 C -0.073 4.073 7 H 0.061 0.939 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.085 4.085 11 H 0.080 0.920 12 C 0.136 3.864 13 N -0.689 5.689 14 C 0.529 3.471 15 O -0.600 6.600 16 C -0.037 4.037 17 C -0.116 4.116 18 C 0.122 3.878 19 N -0.747 5.747 20 C 0.163 3.837 21 C -0.298 4.298 22 C -0.048 4.048 23 O -0.541 6.541 24 Si 0.751 3.249 25 C -0.098 4.098 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.414 0.586 45 H 0.151 0.849 46 H 0.102 0.898 47 H 0.380 0.620 48 H -0.289 1.289 49 H -0.309 1.309 50 H 0.048 0.952 51 H 0.074 0.926 52 H 0.066 0.934 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 -1.138 -3.739 4.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.425 6.425 5 C -0.145 4.145 6 C -0.091 4.091 7 H 0.080 0.920 8 C -0.143 4.143 9 C -0.149 4.149 10 C -0.104 4.104 11 H 0.098 0.902 12 C 0.012 3.988 13 N -0.341 5.341 14 C 0.316 3.684 15 O -0.481 6.481 16 C -0.059 4.059 17 C -0.155 4.155 18 C -0.002 4.002 19 N -0.377 5.377 20 C 0.040 3.960 21 C -0.309 4.309 22 C -0.160 4.160 23 O -0.348 6.348 24 Si 0.660 3.340 25 C -0.135 4.135 26 C -0.158 4.158 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.244 0.756 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.250 0.750 45 H 0.167 0.833 46 H 0.119 0.881 47 H 0.229 0.771 48 H -0.217 1.217 49 H -0.238 1.238 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.084 0.916 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.171 -1.341 -3.776 4.175 hybrid contribution -0.311 -0.084 -0.267 0.418 sum -1.482 -1.425 -4.043 4.536 Atomic orbital electron populations 1.23462 0.75364 1.05396 1.02221 1.86513 1.24571 1.33617 1.83864 1.24527 0.93520 0.80848 0.71198 1.90658 1.68230 1.37159 1.46454 1.21648 0.85221 0.99899 1.07742 1.20986 0.96708 0.92716 0.98707 0.92017 1.21518 0.93101 0.96313 1.03338 1.21486 1.01144 0.95774 0.96504 1.21306 0.96441 0.93360 0.99307 0.90157 1.21169 0.98689 0.93329 0.85616 1.45935 1.61016 1.10912 1.16271 1.20680 0.76425 0.81811 0.89449 1.90660 1.46213 1.62800 1.48475 1.19674 0.95080 0.97116 0.93994 1.21622 1.00945 0.93988 0.98906 1.21650 0.80222 1.01980 0.96364 1.44670 1.06288 1.12295 1.74463 1.20564 0.96756 0.86134 0.92554 1.20512 0.94617 1.00131 1.15658 1.24659 1.08183 0.96703 0.86419 1.86654 1.80463 1.50657 1.16987 0.94045 0.77276 0.84892 0.77817 1.21465 0.94210 0.95330 1.02544 1.21726 1.00664 0.96390 0.97033 0.92339 0.85490 0.92220 0.85711 0.85526 0.90402 0.90397 0.91016 0.92417 0.93407 0.93369 0.75573 0.88486 0.92364 0.91011 0.91579 0.88405 0.74996 0.83282 0.88086 0.77071 1.21654 1.23765 0.93358 0.90786 0.91551 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.37 -1.37 10.56 -51.40 -0.54 -1.91 16 3 C 0.45 2.08 7.67 71.23 0.55 2.63 16 4 O -0.54 -5.91 13.72 21.96 0.30 -5.61 16 5 C -0.11 0.28 5.29 29.85 0.16 0.44 16 6 C -0.07 0.04 1.84 -10.80 -0.02 0.02 16 7 H 0.06 0.22 7.96 -2.38 -0.02 0.20 16 8 C -0.11 0.41 5.20 30.60 0.16 0.57 16 9 C -0.11 0.17 5.20 30.60 0.16 0.33 16 10 C -0.09 0.04 2.22 -10.80 -0.02 0.01 16 11 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 12 C 0.14 0.53 5.00 86.38 0.43 0.97 16 13 N -0.69 -2.06 2.97 -463.06 -1.37 -3.44 16 14 C 0.53 3.84 6.38 87.66 0.56 4.40 16 15 O -0.60 -9.81 15.80 -3.04 -0.05 -9.86 16 16 C -0.04 -0.06 2.75 -12.43 -0.03 -0.10 16 17 C -0.12 -0.21 4.89 30.77 0.15 -0.06 16 18 C 0.12 -0.49 7.16 86.44 0.62 0.13 16 19 N -0.75 3.80 5.83 -346.03 -2.02 1.79 16 20 C 0.16 -0.67 9.62 83.42 0.80 0.13 16 21 C -0.30 0.52 5.14 -16.76 -0.09 0.44 16 22 C -0.05 0.14 1.63 71.24 0.12 0.25 16 23 O -0.54 0.71 6.98 -148.98 -1.04 -0.33 16 24 Si 0.75 -2.07 29.72 68.60 2.04 -0.04 16 25 C -0.10 -0.16 4.53 30.61 0.14 -0.02 16 26 C -0.12 -0.22 4.95 30.61 0.15 -0.06 16 27 H 0.06 0.06 8.13 -2.38 -0.02 0.04 16 28 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.06 0.06 8.13 -2.38 -0.02 0.04 16 30 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.08 -0.44 8.14 -2.39 -0.02 -0.45 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.41 -0.09 4.61 -92.71 -0.43 -0.51 16 39 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.06 0.39 7.76 -2.39 -0.02 0.37 16 41 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.41 -3.79 8.96 -92.71 -0.83 -4.62 16 45 H 0.15 -1.26 4.48 -2.92 -0.01 -1.28 16 46 H 0.10 -0.33 6.39 -2.39 -0.02 -0.35 16 47 H 0.38 -1.88 8.70 -74.05 -0.64 -2.52 16 48 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 49 H -0.31 -1.99 7.11 99.48 0.71 -1.28 16 50 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.07 0.15 5.17 -2.39 -0.01 0.14 16 52 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 53 H 0.05 0.39 5.96 -2.38 -0.01 0.37 16 Total: 0.00 -22.47 396.37 1.41 -21.05 By element: Atomic # 1 Polarization: -12.00 SS G_CDS: -0.93 Total: -12.93 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.03 Total: 11.28 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -3.39 Total: -1.65 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.33 Total: -17.71 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.04 kcal Total: -22.47 1.41 -21.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16902906_15608500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.297 kcal (2) G-P(sol) polarization free energy of solvation -22.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds