Wall clock time and date at job start Tue Mar 9 2021 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46942 * 2 1 4 4 C 1.50708 * 109.46889 * 240.00296 * 2 1 3 5 5 C 1.38242 * 119.97007 * 120.01828 * 4 2 1 6 6 C 1.38287 * 120.10924 * 179.97438 * 5 4 2 7 7 C 1.38118 * 120.05557 * 359.68298 * 6 5 4 8 8 C 1.38754 * 119.94188 * 0.59240 * 7 6 5 9 9 O 1.35908 * 120.05580 * 179.69683 * 8 7 6 10 10 C 1.42898 * 116.99594 * 359.73216 * 9 8 7 11 11 C 1.50706 * 109.47060 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 H 1.08998 * 112.84967 * 316.19646 * 15 14 13 17 17 C 1.53789 * 113.61152 * 87.50111 * 15 14 13 18 18 C 1.53780 * 87.07735 * 139.98241 * 17 15 14 19 19 H 1.09004 * 113.61395 * 220.01775 * 18 17 15 20 20 N 1.46497 * 113.69220 * 89.12741 * 18 17 15 21 21 C 1.35311 * 125.86990 * 347.46182 * 20 18 17 22 22 C 1.35349 * 106.17771 * 179.97438 * 21 20 18 23 23 N 1.33772 * 106.49431 * 0.02562 * 22 21 20 24 24 N 1.28635 * 108.88732 * 359.73144 * 23 22 21 25 25 C 1.53781 * 87.08381 * 334.56357 * 18 17 15 26 26 C 1.38163 * 119.97148 * 299.99708 * 4 2 1 27 27 H 0.96702 * 113.99768 * 299.99475 * 1 2 3 28 28 H 1.08993 * 109.47459 * 120.00313 * 2 1 3 29 29 H 1.48500 * 109.99880 * 300.00199 * 3 2 1 30 30 H 1.48498 * 109.99896 * 61.32277 * 3 2 1 31 31 H 1.08005 * 119.94696 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.97147 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.03051 * 180.32258 * 7 6 5 34 34 H 1.09004 * 109.47454 * 60.00038 * 10 9 8 35 35 H 1.08998 * 109.47671 * 299.99818 * 10 9 8 36 36 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 37 37 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 38 38 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 39 39 H 1.09001 * 113.60999 * 254.52627 * 17 15 14 40 40 H 1.09003 * 113.61481 * 25.43474 * 17 15 14 41 41 H 1.08007 * 126.90842 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.75346 * 179.97438 * 22 21 20 43 43 H 1.08997 * 113.61636 * 270.88696 * 25 18 17 44 44 H 1.08997 * 113.61300 * 139.97975 * 25 18 17 45 45 H 1.08002 * 120.02635 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7263 -0.0380 -2.1400 6 6 3.1892 -0.6872 -3.2698 7 6 2.8635 -2.0114 -3.4891 8 6 2.0610 -2.6868 -2.5807 9 8 1.7340 -3.9880 -2.7973 10 6 2.2467 -4.5968 -3.9841 11 6 1.7841 -6.0294 -4.0540 12 8 1.0846 -6.4843 -3.1738 13 7 2.1484 -6.8053 -5.0940 14 6 1.6982 -8.1978 -5.1621 15 6 2.2420 -8.8478 -6.4359 16 1 2.1508 -8.2049 -7.3114 17 6 3.6408 -9.4635 -6.2645 18 6 3.1477 -10.6306 -7.1361 19 1 3.4915 -11.6067 -6.7940 20 7 3.3591 -10.4239 -8.5710 21 6 3.7021 -9.2558 -9.1617 22 6 3.7915 -9.5155 -10.4870 23 7 3.5021 -10.8125 -10.6403 24 7 3.2557 -11.3235 -9.4858 25 6 1.7266 -10.2784 -6.6658 26 6 1.5972 -2.0332 -1.4487 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 0.8899 29 1 1.5613 2.4679 -1.2085 30 1 1.5879 2.4585 1.2243 31 1 2.9863 0.9960 -1.9677 32 1 3.8099 -0.1597 -3.9790 33 1 3.2296 -2.5196 -4.3690 34 1 3.3362 -4.5677 -3.9660 35 1 1.8833 -4.0544 -4.8569 36 1 2.7051 -6.4404 -5.7997 37 1 2.0654 -8.7412 -4.2915 38 1 0.6087 -8.2271 -5.1758 39 1 4.4352 -8.8781 -6.7274 40 1 3.8685 -9.7510 -5.2380 41 1 3.8706 -8.3071 -8.6737 42 1 4.0456 -8.8135 -11.2674 43 1 1.4311 -10.7886 -5.7491 44 1 0.9758 -10.3507 -7.4526 45 1 0.9760 -2.5579 -0.7379 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946166_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:28 Heat of formation + Delta-G solvation = 67.773863 kcal Electronic energy + Delta-G solvation = -28378.723262 eV Core-core repulsion = 24174.293761 eV Total energy + Delta-G solvation = -4204.429501 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.36529 -41.61355 -41.01047 -40.20300 -38.88432 -37.40474 -35.99285 -34.01368 -32.62726 -32.05516 -31.86460 -30.38775 -28.45415 -27.37214 -26.80808 -25.27068 -23.67543 -23.61733 -22.86015 -22.51690 -21.65722 -20.93963 -19.22564 -18.66692 -18.54648 -18.23912 -17.60842 -17.57629 -17.37270 -17.09482 -16.79538 -16.45547 -16.19066 -15.84774 -15.73936 -15.61455 -15.34842 -15.02088 -14.77881 -14.57814 -14.15675 -14.06460 -13.98423 -13.77550 -13.68971 -13.42769 -13.29566 -12.76081 -12.52329 -12.50443 -12.21934 -12.21227 -12.05802 -12.03956 -11.81531 -11.71028 -11.10761 -10.97138 -10.58620 -10.39855 -10.36947 -9.90662 -9.28342 -4.99069 0.18395 0.39478 0.54636 1.17146 1.20930 1.35616 1.37742 1.57648 1.61481 1.93160 2.41754 2.60970 2.69867 2.86394 3.10472 3.23927 3.28680 3.39657 3.45781 3.67538 3.73539 3.76215 3.80710 3.84525 3.85752 4.00827 4.01511 4.08730 4.17233 4.19011 4.20773 4.21888 4.27996 4.41406 4.46512 4.49238 4.54908 4.58086 4.71435 4.77824 4.95591 5.09541 5.15387 5.20757 5.33085 5.44883 5.55093 5.61472 6.10933 6.30752 6.41057 6.95647 7.52504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.079 4.079 3 Si 0.687 3.313 4 C -0.033 4.033 5 C -0.151 4.151 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.128 3.872 9 O -0.289 6.289 10 C 0.041 3.959 11 C 0.515 3.485 12 O -0.510 6.510 13 N -0.728 5.728 14 C 0.132 3.868 15 C -0.130 4.130 16 H 0.103 0.897 17 C -0.135 4.135 18 C 0.111 3.889 19 H 0.127 0.873 20 N -0.274 5.274 21 C -0.053 4.053 22 C -0.049 4.049 23 N -0.270 5.270 24 N -0.081 5.081 25 C -0.130 4.130 26 C -0.119 4.119 27 H 0.381 0.619 28 H 0.080 0.920 29 H -0.255 1.255 30 H -0.261 1.261 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.402 0.598 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.188 0.812 42 H 0.191 0.809 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 4.158 1.109 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.188 4.188 3 Si 0.588 3.412 4 C -0.033 4.033 5 C -0.168 4.168 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.201 6.201 10 C -0.038 4.038 11 C 0.300 3.700 12 O -0.383 6.383 13 N -0.383 5.383 14 C 0.009 3.991 15 C -0.149 4.149 16 H 0.121 0.879 17 C -0.174 4.174 18 C 0.008 3.992 19 H 0.145 0.855 20 N -0.067 5.067 21 C -0.204 4.204 22 C -0.206 4.206 23 N -0.135 5.135 24 N -0.060 5.060 25 C -0.169 4.169 26 C -0.137 4.137 27 H 0.229 0.771 28 H 0.098 0.902 29 H -0.179 1.179 30 H -0.186 1.186 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.205 0.795 42 H 0.208 0.792 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.583 2.709 1.043 5.425 hybrid contribution -0.456 1.252 0.196 1.346 sum 4.127 3.961 1.239 5.853 Atomic orbital electron populations 1.86599 1.17560 1.80232 1.49790 1.24862 0.84704 1.11142 0.98137 0.95017 0.91643 0.74252 0.80319 1.19044 0.96443 0.92916 0.94931 1.20883 1.00924 0.99909 0.95116 1.20876 0.97977 0.93588 0.96585 1.21273 1.03622 0.96624 1.00997 1.18999 0.94953 0.82954 0.94827 1.86170 1.70441 1.22614 1.40887 1.22446 1.00242 0.92072 0.89039 1.20054 0.80775 0.87056 0.82124 1.90805 1.35738 1.74197 1.37577 1.45769 1.54824 1.12594 1.25124 1.21371 1.00250 0.80501 0.96980 1.23014 0.96201 0.96933 0.98710 0.87890 1.23548 0.97417 0.95261 1.01134 1.22511 0.99620 1.02538 0.74522 0.85473 1.47185 1.43961 1.07014 1.08584 1.23578 1.08894 0.93314 0.94614 1.23690 1.06460 0.94687 0.95766 1.75189 1.15004 1.08467 1.14886 1.78395 1.19402 1.16447 0.91754 1.23348 0.95224 0.94969 1.03345 1.20238 1.02414 0.94014 0.97080 0.77096 0.90240 1.17921 1.18602 0.85253 0.84954 0.85226 0.88678 0.88757 0.76359 0.90437 0.90569 0.89558 0.86568 0.79509 0.79205 0.86680 0.89612 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.86 12.74 -35.23 -0.45 -1.31 16 2 C -0.08 -0.01 2.81 36.01 0.10 0.09 16 3 Si 0.69 -0.74 29.79 -169.99 -5.06 -5.80 16 4 C -0.03 -0.05 5.42 -104.64 -0.57 -0.62 16 5 C -0.15 -0.01 8.67 -39.56 -0.34 -0.35 16 6 C -0.07 0.06 10.04 -39.61 -0.40 -0.34 16 7 C -0.21 0.11 9.04 -39.43 -0.36 -0.24 16 8 C 0.13 0.25 6.69 -39.22 -0.26 -0.02 16 9 O -0.29 -0.76 9.67 -39.36 -0.38 -1.14 16 10 C 0.04 -0.07 5.22 36.01 0.19 0.11 16 11 C 0.52 0.01 7.91 -10.98 -0.09 -0.07 16 12 O -0.51 -2.75 16.50 -14.35 -0.24 -2.99 16 13 N -0.73 2.85 5.56 -60.29 -0.33 2.51 16 14 C 0.13 -0.50 5.51 -4.04 -0.02 -0.52 16 15 C -0.13 0.74 3.34 -89.80 -0.30 0.44 16 16 H 0.10 -0.62 6.99 -51.93 -0.36 -0.98 16 17 C -0.14 0.83 6.88 -25.91 -0.18 0.65 16 18 C 0.11 -0.41 5.10 -67.12 -0.34 -0.75 16 19 H 0.13 -0.51 8.14 -51.93 -0.42 -0.94 16 20 N -0.27 0.11 3.52 -53.97 -0.19 -0.08 16 21 C -0.05 0.11 9.69 -17.05 -0.17 -0.06 16 22 C -0.05 -0.02 12.05 -17.74 -0.21 -0.23 16 23 N -0.27 -1.19 12.41 30.23 0.38 -0.81 16 24 N -0.08 -0.30 13.17 60.35 0.79 0.49 16 25 C -0.13 0.59 7.44 -25.92 -0.19 0.39 16 26 C -0.12 -0.32 9.55 -39.44 -0.38 -0.70 16 27 H 0.38 -0.95 8.74 45.56 0.40 -0.55 16 28 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 30 H -0.26 -0.25 7.11 56.52 0.40 0.16 16 31 H 0.13 -0.24 4.87 -52.48 -0.26 -0.49 16 32 H 0.13 -0.45 8.06 -52.49 -0.42 -0.87 16 33 H 0.13 -0.46 6.30 -52.48 -0.33 -0.79 16 34 H 0.10 -0.44 7.65 -51.93 -0.40 -0.84 16 35 H 0.09 -0.40 7.67 -51.93 -0.40 -0.80 16 36 H 0.40 -2.91 8.47 -40.82 -0.35 -3.26 16 37 H 0.08 -0.25 7.84 -51.93 -0.41 -0.66 16 38 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.09 -0.57 6.99 -51.93 -0.36 -0.94 16 40 H 0.12 -0.79 7.90 -51.93 -0.41 -1.20 16 41 H 0.19 -1.16 6.75 -52.48 -0.35 -1.51 16 42 H 0.19 -0.51 8.06 -52.49 -0.42 -0.93 16 43 H 0.11 -0.65 8.10 -51.93 -0.42 -1.07 16 44 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 45 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 LS Contribution 377.76 15.07 5.69 5.69 Total: 0.00 -14.11 377.76 -9.10 -23.21 By element: Atomic # 1 Polarization: -11.77 SS G_CDS: -5.80 Total: -17.57 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -3.52 Total: -2.21 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: 0.64 Total: 2.11 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -1.07 Total: -5.43 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.06 Total: -5.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -14.11 -9.10 -23.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.986 kcal (2) G-P(sol) polarization free energy of solvation -14.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds