Wall clock time and date at job start Tue Mar 9 2021 12:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46942 * 2 1 4 4 C 1.50708 * 109.46889 * 240.00296 * 2 1 3 5 5 C 1.38242 * 119.97007 * 120.01828 * 4 2 1 6 6 C 1.38287 * 120.10924 * 179.97438 * 5 4 2 7 7 C 1.38118 * 120.05557 * 359.68298 * 6 5 4 8 8 C 1.38754 * 119.94188 * 0.59240 * 7 6 5 9 9 O 1.35908 * 120.05580 * 179.69683 * 8 7 6 10 10 C 1.42898 * 116.99594 * 359.73216 * 9 8 7 11 11 C 1.50706 * 109.47060 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 H 1.08998 * 112.84967 * 316.19646 * 15 14 13 17 17 C 1.53789 * 113.61152 * 87.50111 * 15 14 13 18 18 C 1.53780 * 87.07735 * 139.98241 * 17 15 14 19 19 H 1.09004 * 113.61395 * 220.01775 * 18 17 15 20 20 N 1.46497 * 113.69220 * 89.12741 * 18 17 15 21 21 C 1.35311 * 125.86990 * 347.46182 * 20 18 17 22 22 C 1.35349 * 106.17771 * 179.97438 * 21 20 18 23 23 N 1.33772 * 106.49431 * 0.02562 * 22 21 20 24 24 N 1.28635 * 108.88732 * 359.73144 * 23 22 21 25 25 C 1.53781 * 87.08381 * 334.56357 * 18 17 15 26 26 C 1.38163 * 119.97148 * 299.99708 * 4 2 1 27 27 H 0.96702 * 113.99768 * 299.99475 * 1 2 3 28 28 H 1.08993 * 109.47459 * 120.00313 * 2 1 3 29 29 H 1.48500 * 109.99880 * 300.00199 * 3 2 1 30 30 H 1.48498 * 109.99896 * 61.32277 * 3 2 1 31 31 H 1.08005 * 119.94696 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.97147 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.03051 * 180.32258 * 7 6 5 34 34 H 1.09004 * 109.47454 * 60.00038 * 10 9 8 35 35 H 1.08998 * 109.47671 * 299.99818 * 10 9 8 36 36 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 37 37 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 38 38 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 39 39 H 1.09001 * 113.60999 * 254.52627 * 17 15 14 40 40 H 1.09003 * 113.61481 * 25.43474 * 17 15 14 41 41 H 1.08007 * 126.90842 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.75346 * 179.97438 * 22 21 20 43 43 H 1.08997 * 113.61636 * 270.88696 * 25 18 17 44 44 H 1.08997 * 113.61300 * 139.97975 * 25 18 17 45 45 H 1.08002 * 120.02635 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7263 -0.0380 -2.1400 6 6 3.1892 -0.6872 -3.2698 7 6 2.8635 -2.0114 -3.4891 8 6 2.0610 -2.6868 -2.5807 9 8 1.7340 -3.9880 -2.7973 10 6 2.2467 -4.5968 -3.9841 11 6 1.7841 -6.0294 -4.0540 12 8 1.0846 -6.4843 -3.1738 13 7 2.1484 -6.8053 -5.0940 14 6 1.6982 -8.1978 -5.1621 15 6 2.2420 -8.8478 -6.4359 16 1 2.1508 -8.2049 -7.3114 17 6 3.6408 -9.4635 -6.2645 18 6 3.1477 -10.6306 -7.1361 19 1 3.4915 -11.6067 -6.7940 20 7 3.3591 -10.4239 -8.5710 21 6 3.7021 -9.2558 -9.1617 22 6 3.7915 -9.5155 -10.4870 23 7 3.5021 -10.8125 -10.6403 24 7 3.2557 -11.3235 -9.4858 25 6 1.7266 -10.2784 -6.6658 26 6 1.5972 -2.0332 -1.4487 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 0.8899 29 1 1.5613 2.4679 -1.2085 30 1 1.5879 2.4585 1.2243 31 1 2.9863 0.9960 -1.9677 32 1 3.8099 -0.1597 -3.9790 33 1 3.2296 -2.5196 -4.3690 34 1 3.3362 -4.5677 -3.9660 35 1 1.8833 -4.0544 -4.8569 36 1 2.7051 -6.4404 -5.7997 37 1 2.0654 -8.7412 -4.2915 38 1 0.6087 -8.2271 -5.1758 39 1 4.4352 -8.8781 -6.7274 40 1 3.8685 -9.7510 -5.2380 41 1 3.8706 -8.3071 -8.6737 42 1 4.0456 -8.8135 -11.2674 43 1 1.4311 -10.7886 -5.7491 44 1 0.9758 -10.3507 -7.4526 45 1 0.9760 -2.5579 -0.7379 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946166_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:27 Heat of formation + Delta-G solvation = 61.472304 kcal Electronic energy + Delta-G solvation = -28378.996518 eV Core-core repulsion = 24174.293761 eV Total energy + Delta-G solvation = -4204.702757 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.30938 -41.55533 -40.83860 -40.06720 -38.87795 -37.42123 -35.90789 -33.93776 -32.58651 -31.99823 -31.79410 -30.27035 -28.25388 -26.97711 -26.77394 -25.10477 -23.64076 -23.57149 -22.70582 -22.40938 -21.56040 -20.71481 -19.15381 -18.59818 -18.49449 -17.98904 -17.50582 -17.48535 -17.30042 -17.03622 -16.66511 -16.28099 -16.03839 -15.78716 -15.66893 -15.47827 -15.20679 -14.89910 -14.69430 -14.52575 -14.10897 -13.91392 -13.76111 -13.60233 -13.55360 -13.29294 -13.19366 -12.72614 -12.50282 -12.21550 -12.12837 -12.01543 -11.98280 -11.74491 -11.73522 -11.65091 -11.06141 -10.90943 -10.58169 -10.35280 -10.20928 -9.87998 -9.26922 -4.92059 0.21809 0.40576 0.63747 1.27113 1.38396 1.44503 1.50493 1.61193 1.62314 1.95476 2.58190 2.65122 3.03892 3.22043 3.36606 3.44048 3.58316 3.63647 3.70489 3.79586 3.86469 4.03627 4.09702 4.10267 4.14855 4.15245 4.27543 4.28196 4.29476 4.32170 4.42826 4.50006 4.60452 4.65958 4.66709 4.72763 4.78085 4.88065 4.95125 4.99118 5.13652 5.24770 5.26769 5.33544 5.37939 5.47981 5.69794 5.72559 6.28524 6.47585 6.55181 7.13038 7.52105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.098 4.098 3 Si 0.782 3.218 4 C -0.049 4.049 5 C -0.160 4.160 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.324 6.324 10 C 0.036 3.964 11 C 0.511 3.489 12 O -0.576 6.576 13 N -0.705 5.705 14 C 0.133 3.867 15 C -0.114 4.114 16 H 0.115 0.885 17 C -0.118 4.118 18 C 0.096 3.904 19 H 0.126 0.874 20 N -0.268 5.268 21 C -0.033 4.033 22 C -0.068 4.068 23 N -0.320 5.320 24 N -0.131 5.131 25 C -0.131 4.131 26 C -0.152 4.152 27 H 0.395 0.605 28 H 0.091 0.909 29 H -0.295 1.295 30 H -0.288 1.288 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.423 0.577 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.235 0.765 42 H 0.213 0.787 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 6.129 0.284 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.205 4.205 3 Si 0.686 3.314 4 C -0.049 4.049 5 C -0.178 4.178 6 C -0.088 4.088 7 C -0.219 4.219 8 C 0.069 3.931 9 O -0.238 6.238 10 C -0.042 4.042 11 C 0.297 3.703 12 O -0.455 6.455 13 N -0.360 5.360 14 C 0.009 3.991 15 C -0.132 4.132 16 H 0.133 0.867 17 C -0.156 4.156 18 C -0.006 4.006 19 H 0.144 0.856 20 N -0.062 5.062 21 C -0.184 4.184 22 C -0.226 4.226 23 N -0.184 5.184 24 N -0.110 5.110 25 C -0.170 4.170 26 C -0.170 4.170 27 H 0.245 0.755 28 H 0.108 0.892 29 H -0.222 1.222 30 H -0.215 1.215 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.252 0.748 42 H 0.230 0.770 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.906 4.632 0.186 8.318 hybrid contribution -1.210 0.640 0.451 1.441 sum 5.696 5.272 0.637 7.788 Atomic orbital electron populations 1.86555 1.18708 1.80880 1.50955 1.25253 0.84059 1.12817 0.98407 0.93993 0.90025 0.70931 0.76443 1.19277 0.97059 0.92673 0.95875 1.21176 1.00627 1.00712 0.95269 1.21332 0.97376 0.93593 0.96467 1.21645 1.02281 0.96764 1.01254 1.19158 0.95725 0.82995 0.95215 1.86121 1.71424 1.23159 1.43053 1.22774 1.02196 0.90623 0.88607 1.20539 0.79837 0.88041 0.81855 1.90780 1.38957 1.75548 1.40225 1.45603 1.53788 1.12153 1.24464 1.21335 0.99276 0.80640 0.97828 1.22903 0.96315 0.96017 0.97976 0.86657 1.23547 0.97252 0.93664 1.01157 1.22832 1.00522 1.03911 0.73329 0.85616 1.47454 1.42566 1.07009 1.09168 1.24278 1.06114 0.94131 0.93903 1.24274 1.06732 0.93872 0.97772 1.75105 1.16659 1.10760 1.15917 1.78314 1.22046 1.18160 0.92461 1.23375 0.94363 0.96219 1.03072 1.20285 1.03796 0.94987 0.97978 0.75496 0.89161 1.22212 1.21524 0.83635 0.81700 0.81686 0.85197 0.85883 0.73885 0.90930 0.92497 0.87724 0.85461 0.74827 0.76986 0.85779 0.91556 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.75 12.74 -148.98 -1.90 -4.65 16 2 C -0.10 -0.13 2.81 71.24 0.20 0.07 16 3 Si 0.78 -1.74 29.79 68.60 2.04 0.30 16 4 C -0.05 -0.19 5.42 -19.88 -0.11 -0.30 16 5 C -0.16 0.11 8.67 22.28 0.19 0.31 16 6 C -0.07 0.29 10.04 22.25 0.22 0.51 16 7 C -0.20 0.65 9.04 22.36 0.20 0.86 16 8 C 0.11 0.47 6.69 22.50 0.15 0.62 16 9 O -0.32 -1.93 9.67 -73.47 -0.71 -2.64 16 10 C 0.04 -0.19 5.22 71.24 0.37 0.18 16 11 C 0.51 -0.18 7.91 87.66 0.69 0.51 16 12 O -0.58 -7.21 16.50 16.00 0.26 -6.94 16 13 N -0.71 6.79 5.56 -463.05 -2.57 4.22 16 14 C 0.13 -1.11 5.51 86.38 0.48 -0.64 16 15 C -0.11 1.50 3.34 -10.26 -0.03 1.47 16 16 H 0.12 -1.76 6.99 -2.39 -0.02 -1.78 16 17 C -0.12 1.76 6.88 31.12 0.21 1.97 16 18 C 0.10 -0.77 5.10 45.52 0.23 -0.54 16 19 H 0.13 -0.99 8.14 -2.38 -0.02 -1.01 16 20 N -0.27 0.33 3.52 -324.67 -1.14 -0.81 16 21 C -0.03 0.20 9.69 83.49 0.81 1.01 16 22 C -0.07 -0.01 12.05 83.73 1.01 0.99 16 23 N -0.32 -3.24 12.41 -58.26 -0.72 -3.96 16 24 N -0.13 -1.16 13.17 37.02 0.49 -0.67 16 25 C -0.13 1.21 7.44 31.12 0.23 1.44 16 26 C -0.15 -1.13 9.55 22.36 0.21 -0.92 16 27 H 0.39 -1.39 8.74 -74.06 -0.65 -2.04 16 28 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H -0.29 -1.29 7.11 99.48 0.71 -0.58 16 30 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 31 H 0.15 -0.72 4.87 -2.91 -0.01 -0.73 16 32 H 0.17 -1.79 8.06 -2.91 -0.02 -1.81 16 33 H 0.17 -1.87 6.30 -2.91 -0.02 -1.89 16 34 H 0.13 -1.65 7.65 -2.39 -0.02 -1.66 16 35 H 0.12 -1.40 7.67 -2.39 -0.02 -1.42 16 36 H 0.42 -7.65 8.47 -92.70 -0.79 -8.43 16 37 H 0.07 -0.49 7.84 -2.39 -0.02 -0.51 16 38 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.10 -1.85 6.99 -2.39 -0.02 -1.87 16 40 H 0.13 -2.07 7.90 -2.39 -0.02 -2.08 16 41 H 0.24 -3.98 6.75 -2.91 -0.02 -4.00 16 42 H 0.21 -1.36 8.06 -2.91 -0.02 -1.38 16 43 H 0.12 -1.38 8.10 -2.39 -0.02 -1.40 16 44 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 Total: 0.00 -40.15 377.76 0.48 -39.67 By element: Atomic # 1 Polarization: -31.72 SS G_CDS: -0.35 Total: -32.07 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.08 Total: 7.56 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -3.95 Total: -1.22 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.34 Total: -14.24 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.04 Total: 0.30 kcal Total: -40.15 0.48 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.145 kcal (2) G-P(sol) polarization free energy of solvation -40.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds