Wall clock time and date at job start Tue Mar 9 2021 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33817 * 122.44998 * 2 1 4 4 C 1.50699 * 124.51925 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.46970 * 113.27936 * 4 3 2 6 6 Si 1.86304 * 109.47083 * 233.27652 * 4 3 2 7 7 S 1.70618 * 110.95474 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56347 * 359.97438 * 7 3 2 9 9 C 1.46577 * 125.45648 * 179.97438 * 8 7 3 10 10 O 1.21701 * 120.00001 * 180.02562 * 9 8 7 11 11 N 1.34785 * 120.00159 * 0.02894 * 9 8 7 12 12 C 1.46498 * 119.99921 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47069 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.84360 * 43.80808 * 13 12 11 15 15 C 1.53781 * 113.61544 * 175.00045 * 13 12 11 16 16 C 1.53786 * 87.07748 * 140.06943 * 15 13 12 17 17 H 1.09006 * 113.60730 * 219.93858 * 16 15 13 18 18 N 1.46493 * 113.61749 * 89.12100 * 16 15 13 19 19 C 1.35315 * 125.86421 * 274.99992 * 18 16 15 20 20 C 1.35358 * 106.17494 * 180.02562 * 19 18 16 21 21 N 1.33769 * 106.49203 * 359.97438 * 20 19 18 22 22 N 1.28626 * 108.89043 * 0.02562 * 21 20 19 23 23 C 1.53777 * 113.69176 * 272.54045 * 13 12 11 24 24 C 1.36648 * 109.08363 * 0.24487 * 8 7 3 25 25 H 1.09000 * 109.46552 * 84.85385 * 1 2 3 26 26 H 1.09004 * 109.46923 * 204.85204 * 1 2 3 27 27 H 1.08990 * 109.47237 * 324.85133 * 1 2 3 28 28 H 1.08995 * 109.47166 * 353.27865 * 4 3 2 29 29 H 0.96702 * 113.99910 * 59.99931 * 5 4 3 30 30 H 1.48499 * 109.99799 * 58.68184 * 6 4 3 31 31 H 1.48498 * 110.00245 * 180.02562 * 6 4 3 32 32 H 0.96994 * 119.99695 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47012 * 60.00419 * 12 11 9 34 34 H 1.08995 * 109.47322 * 300.00240 * 12 11 9 35 35 H 1.09004 * 113.61208 * 25.52250 * 15 13 12 36 36 H 1.08998 * 113.61353 * 254.61706 * 15 13 12 37 37 H 1.07997 * 126.91575 * 0.02562 * 19 18 16 38 38 H 1.07996 * 126.75377 * 179.97438 * 20 19 18 39 39 H 1.09002 * 113.61561 * 105.46154 * 23 13 12 40 40 H 1.09002 * 113.61518 * 334.55553 * 23 13 12 41 41 H 1.07994 * 123.34885 * 179.75864 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0006 5 8 1.9387 3.1631 1.2370 6 14 2.3596 3.4982 -1.4084 7 16 3.8970 0.7892 -0.0007 8 6 3.5937 -0.9428 -0.0002 9 6 4.6231 -1.9862 -0.0010 10 8 4.3002 -3.1596 -0.0011 11 7 5.9274 -1.6462 -0.0017 12 6 6.9562 -2.6892 -0.0019 13 6 8.3413 -2.0392 -0.0033 14 1 8.4169 -1.2028 0.6916 15 6 9.4954 -3.0482 0.1192 16 6 10.2495 -2.1911 -0.9113 17 1 10.8044 -2.7771 -1.6440 18 7 11.0524 -1.1229 -0.3111 19 6 10.6039 0.1049 0.0386 20 6 11.6698 0.7642 0.5498 21 7 12.7043 -0.0816 0.4892 22 7 12.3057 -1.1908 -0.0259 23 6 8.8731 -1.7209 -1.4106 24 6 2.2446 -1.1601 -0.0051 25 1 -0.3632 0.0922 -1.0236 26 1 -0.3633 -0.9325 0.4319 27 1 -0.3633 0.8402 0.5916 28 1 0.5542 2.4512 -0.1212 29 1 2.8854 3.2555 1.4109 30 1 2.0786 2.8190 -2.6987 31 1 1.7867 4.8681 -1.4196 32 1 6.1847 -0.7111 -0.0020 33 1 6.8452 -3.3088 -0.8918 34 1 6.8459 -3.3085 0.8882 35 1 9.2438 -4.0452 -0.2425 36 1 9.9629 -3.0593 1.1037 37 1 9.5979 0.4829 -0.0687 38 1 11.6825 1.7744 0.9316 39 1 8.8384 -0.6606 -1.6611 40 1 8.4515 -2.3551 -2.1905 41 1 1.8020 -2.1452 -0.0096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946166_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:58 Heat of formation + Delta-G solvation = 93.597045 kcal Electronic energy + Delta-G solvation = -25608.783859 eV Core-core repulsion = 21813.308574 eV Total energy + Delta-G solvation = -3795.475285 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.27457 -41.13270 -40.25049 -39.57204 -37.57898 -35.91652 -33.91784 -32.54782 -31.95125 -29.87368 -29.56835 -26.96758 -26.67840 -25.12558 -24.05007 -23.53259 -22.55249 -21.88254 -20.78107 -20.20566 -19.39900 -18.09128 -17.84685 -17.65920 -17.21994 -16.94960 -16.65915 -16.13123 -16.03241 -15.76614 -15.55155 -15.45389 -15.02515 -14.86547 -14.73920 -14.34803 -14.21972 -13.86220 -13.55689 -13.46893 -13.27243 -13.15914 -12.99164 -12.69117 -12.45329 -12.27641 -12.17385 -11.95512 -11.94802 -11.72440 -11.67632 -11.25490 -10.91677 -10.77061 -10.31430 -10.28223 -9.68564 -9.39797 -5.17857 -0.68686 0.32588 0.67340 0.69456 1.06522 1.26308 1.42001 1.60991 1.65099 1.90224 1.97667 2.06805 3.06262 3.24859 3.36891 3.47479 3.56842 3.62454 3.72853 3.75300 4.06288 4.13264 4.16698 4.17732 4.31912 4.35443 4.40523 4.43980 4.45420 4.63437 4.68258 4.69200 4.72964 4.80755 4.81587 4.90678 4.94439 4.98167 5.14413 5.24497 5.30302 5.31805 5.34963 5.76042 6.34312 6.61514 7.02844 7.55811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.114 4.114 3 C -0.244 4.244 4 C -0.040 4.040 5 O -0.547 6.547 6 Si 0.765 3.235 7 S 0.290 5.710 8 C -0.285 4.285 9 C 0.589 3.411 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.132 3.868 13 C -0.118 4.118 14 H 0.114 0.886 15 C -0.129 4.129 16 C 0.097 3.903 17 H 0.127 0.873 18 N -0.268 5.268 19 C -0.033 4.033 20 C -0.067 4.067 21 N -0.320 5.320 22 N -0.132 5.132 23 C -0.121 4.121 24 C -0.062 4.062 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.394 0.606 30 H -0.283 1.283 31 H -0.279 1.279 32 H 0.413 0.587 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.235 0.765 38 H 0.214 0.786 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 4.480 -2.250 5.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.363 4.363 4 C -0.151 4.151 5 O -0.354 6.354 6 Si 0.667 3.333 7 S 0.560 5.440 8 C -0.405 4.405 9 C 0.376 3.624 10 O -0.454 6.454 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.136 4.136 14 H 0.132 0.868 15 C -0.168 4.168 16 C -0.005 4.005 17 H 0.145 0.855 18 N -0.062 5.062 19 C -0.185 4.185 20 C -0.225 4.225 21 N -0.184 5.184 22 N -0.110 5.110 23 C -0.159 4.159 24 C -0.096 4.096 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.244 0.756 30 H -0.209 1.209 31 H -0.205 1.205 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.231 0.769 39 H 0.122 0.878 40 H 0.146 0.854 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.422 4.099 -2.964 5.076 hybrid contribution -2.730 -0.590 0.337 2.813 sum -3.152 3.508 -2.627 5.398 Atomic orbital electron populations 1.20642 0.88861 1.03673 1.03029 1.18790 0.98725 0.91032 1.04168 1.24716 1.00489 1.00725 1.10418 1.24795 1.03882 0.89693 0.96778 1.86560 1.31558 1.79300 1.38028 0.94287 0.88499 0.76512 0.73988 1.82061 1.00516 0.94954 1.66484 1.24584 0.97620 0.98877 1.19441 1.17118 0.82610 0.86902 0.75743 1.90848 1.82439 1.20148 1.51930 1.45688 1.04366 1.11357 1.74734 1.21411 0.84998 0.89868 1.02824 1.22932 0.92140 0.99773 0.98762 0.86784 1.23367 0.94536 0.99745 0.99130 1.22822 0.92436 0.87717 0.97506 0.85526 1.47455 1.07321 1.12380 1.39081 1.24286 1.04031 0.85711 1.04430 1.24276 0.89064 1.03115 1.06085 1.75099 1.28449 0.98546 1.16351 1.78307 0.95345 1.19276 1.18087 1.23568 0.89725 1.05206 0.97381 1.20725 0.91674 0.99995 0.97217 0.90371 0.90743 0.90835 0.86000 0.75559 1.20891 1.20486 0.74966 0.90459 0.91868 0.85601 0.91436 0.74869 0.76925 0.87750 0.85377 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.21 9.47 71.24 0.67 0.88 16 2 C -0.11 0.00 5.78 -21.05 -0.12 -0.12 16 3 C -0.24 0.80 4.83 24.68 0.12 0.92 16 4 C -0.04 0.17 2.77 71.24 0.20 0.37 16 5 O -0.55 2.08 12.88 -148.98 -1.92 0.16 16 6 Si 0.76 -4.41 32.13 68.60 2.20 -2.21 16 7 S 0.29 -2.41 20.82 -56.49 -1.18 -3.59 16 8 C -0.28 0.10 6.45 24.07 0.16 0.26 16 9 C 0.59 1.10 7.78 86.42 0.67 1.77 16 10 O -0.57 -6.37 16.84 -4.35 -0.07 -6.44 16 11 N -0.71 4.84 5.55 -467.17 -2.59 2.25 16 12 C 0.13 -1.05 5.51 86.38 0.48 -0.58 16 13 C -0.12 1.51 3.33 -10.27 -0.03 1.48 16 14 H 0.11 -1.67 6.97 -2.39 -0.02 -1.69 16 15 C -0.13 1.23 7.44 31.12 0.23 1.46 16 16 C 0.10 -0.80 5.11 45.52 0.23 -0.57 16 17 H 0.13 -1.05 8.14 -2.38 -0.02 -1.06 16 18 N -0.27 0.39 3.52 -324.66 -1.14 -0.75 16 19 C -0.03 0.20 9.68 83.49 0.81 1.01 16 20 C -0.07 0.01 12.06 83.73 1.01 1.02 16 21 N -0.32 -3.12 12.41 -58.26 -0.72 -3.84 16 22 N -0.13 -1.12 13.16 37.02 0.49 -0.63 16 23 C -0.12 1.76 6.88 31.12 0.21 1.98 16 24 C -0.06 -0.13 9.78 21.72 0.21 0.08 16 25 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.07 -0.17 8.10 -2.38 -0.02 -0.19 16 27 H 0.07 -0.18 7.00 -2.39 -0.02 -0.19 16 28 H 0.12 -0.39 6.25 -2.39 -0.01 -0.40 16 29 H 0.39 -4.91 8.70 -74.06 -0.64 -5.56 16 30 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 31 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 32 H 0.41 -5.50 7.59 -92.71 -0.70 -6.21 16 33 H 0.08 -0.55 7.85 -2.39 -0.02 -0.56 16 34 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.13 -1.49 8.10 -2.38 -0.02 -1.51 16 36 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.24 -3.97 6.74 -2.91 -0.02 -3.99 16 38 H 0.21 -1.46 8.06 -2.91 -0.02 -1.48 16 39 H 0.10 -1.81 6.98 -2.39 -0.02 -1.82 16 40 H 0.13 -2.07 7.90 -2.39 -0.02 -2.09 16 41 H 0.14 0.51 8.06 -2.91 -0.02 0.48 16 Total: 0.00 -30.86 359.27 -0.31 -31.17 By element: Atomic # 1 Polarization: -25.86 SS G_CDS: -0.22 Total: -26.08 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.85 Total: 9.95 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -3.97 Total: -2.97 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -1.99 Total: -6.28 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.20 Total: -2.21 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.18 Total: -3.59 kcal Total: -30.86 -0.31 -31.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.768 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds