Wall clock time and date at job start Tue Mar 9 2021 12:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86296 * 109.47674 * 2 1 4 4 C 1.50705 * 109.47218 * 120.00084 * 2 1 3 5 5 C 1.34236 * 126.50150 * 254.97517 * 4 2 1 6 6 N 1.36837 * 109.93711 * 180.29861 * 5 4 2 7 7 C 1.46495 * 125.05897 * 179.72930 * 6 5 4 8 8 C 1.50702 * 109.47463 * 265.02477 * 7 6 5 9 9 O 1.21281 * 119.99863 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99950 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46810 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.84817 * 314.66263 * 12 11 10 14 14 C 1.53773 * 113.61620 * 85.86731 * 12 11 10 15 15 C 1.53956 * 87.02510 * 139.94788 * 14 12 11 16 16 H 1.08997 * 113.66715 * 220.06618 * 15 14 12 17 17 N 1.46499 * 113.61152 * 89.19490 * 15 14 12 18 18 C 1.35311 * 125.87022 * 347.46858 * 17 15 14 19 19 C 1.35355 * 106.17405 * 180.02562 * 18 17 15 20 20 N 1.33769 * 106.49652 * 0.02562 * 19 18 17 21 21 N 1.28631 * 108.88587 * 359.73520 * 20 19 18 22 22 C 1.53787 * 113.60889 * 183.47249 * 12 11 10 23 23 C 1.37689 * 109.87393 * 359.55777 * 6 5 4 24 24 C 1.39087 * 133.51282 * 180.09798 * 23 6 5 25 25 C 1.37788 * 119.77795 * 180.36513 * 24 23 6 26 26 C 1.38784 * 120.66934 * 359.97438 * 25 24 23 27 27 C 1.36667 * 120.52601 * 0.02562 * 26 25 24 28 28 C 1.39587 * 119.76286 * 359.97438 * 27 26 25 29 29 H 0.96702 * 114.00163 * 59.99710 * 1 2 3 30 30 H 1.09003 * 109.47344 * 239.99746 * 2 1 3 31 31 H 1.48508 * 109.99730 * 298.68251 * 3 2 1 32 32 H 1.48503 * 109.99664 * 59.99898 * 3 2 1 33 33 H 1.08002 * 125.02686 * 0.02929 * 5 4 2 34 34 H 1.09004 * 109.47318 * 25.02832 * 7 6 5 35 35 H 1.09004 * 109.47068 * 145.02521 * 7 6 5 36 36 H 0.97005 * 119.99829 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46835 * 299.99883 * 11 10 8 38 38 H 1.08993 * 109.46921 * 60.00580 * 11 10 8 39 39 H 1.09004 * 113.61262 * 254.52191 * 14 12 11 40 40 H 1.08998 * 113.61625 * 25.42661 * 14 12 11 41 41 H 1.07995 * 126.91654 * 0.02562 * 18 17 15 42 42 H 1.08005 * 126.75051 * 179.97438 * 19 18 17 43 43 H 1.08991 * 113.61462 * 334.56335 * 22 12 11 44 44 H 1.08996 * 113.61185 * 105.47067 * 22 12 11 45 45 H 1.08001 * 120.10869 * 0.38115 * 24 23 6 46 46 H 1.08004 * 119.66581 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.73904 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.11550 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4612 -0.1377 2.3228 6 7 2.8092 -1.0996 3.2317 7 6 3.4213 -0.8414 4.5374 8 6 4.9191 -0.9619 4.4228 9 8 5.4254 -1.2360 3.3554 10 7 5.6959 -0.7642 5.5062 11 6 7.1520 -0.8808 5.3947 12 6 7.7911 -0.6113 6.7584 13 1 7.3714 0.2623 7.2573 14 6 7.8706 -1.8557 7.6582 15 6 9.2666 -1.3625 8.0804 16 1 10.0023 -2.1610 8.1761 17 7 9.2466 -0.4655 9.2385 18 6 8.1480 0.1193 9.7695 19 6 8.5832 0.8587 10.8164 20 7 9.9093 0.6926 10.8735 21 7 10.2706 -0.1016 9.9283 22 6 9.3287 -0.6260 6.7318 23 6 2.4948 -2.3458 2.7379 24 6 2.6306 -3.6364 3.2384 25 6 2.2170 -4.7109 2.4816 26 6 1.6647 -4.5195 1.2228 27 6 1.5219 -3.2601 0.7116 28 6 1.9343 -2.1571 1.4613 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5139 -0.8900 31 1 1.5879 2.4585 -1.2243 32 1 1.5616 2.4678 1.2085 33 1 2.5971 0.9247 2.4616 34 1 3.1619 0.1644 4.8678 35 1 3.0527 -1.5681 5.2615 36 1 5.2909 -0.5446 6.3599 37 1 7.4117 -1.8866 5.0645 38 1 7.5202 -0.1541 4.6705 39 1 7.1426 -1.8552 8.4695 40 1 7.8882 -2.7944 7.1046 41 1 7.1289 0.0168 9.4271 42 1 7.9788 1.4643 11.4755 43 1 9.7456 -1.2279 5.9244 44 1 9.7760 0.3659 6.7962 45 1 3.0586 -3.7957 4.2171 46 1 2.3236 -5.7123 2.8718 47 1 1.3451 -5.3725 0.6426 48 1 1.0917 -3.1188 -0.2688 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946166_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:13 Heat of formation + Delta-G solvation = 144.863867 kcal Electronic energy + Delta-G solvation = -32076.756375 eV Core-core repulsion = 27716.936128 eV Total energy + Delta-G solvation = -4359.820246 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.38172 -42.49453 -41.15504 -40.20415 -38.00652 -37.65156 -36.02556 -34.26926 -33.93110 -32.06643 -31.54541 -30.22210 -29.98891 -28.47442 -27.39874 -25.90884 -25.06399 -23.63694 -23.63226 -22.84987 -22.57787 -21.79162 -20.99394 -20.46202 -18.85122 -18.38599 -18.29714 -18.24886 -17.70483 -17.46615 -17.05626 -16.76138 -16.38786 -16.34458 -15.93135 -15.81405 -15.65211 -15.33328 -15.17999 -14.84765 -14.73743 -14.64594 -14.44276 -14.15915 -14.03384 -14.00220 -13.67099 -13.45656 -13.27579 -12.77772 -12.67921 -12.53752 -12.46974 -12.40349 -12.22840 -12.09034 -11.99828 -11.83106 -11.62783 -11.19856 -11.05585 -10.43563 -10.41463 -10.39120 -10.29138 -9.03563 -8.54533 -4.91213 0.26395 0.52925 0.77333 1.15406 1.31731 1.34140 1.38572 1.59874 1.59931 1.63512 1.96382 2.02669 2.65885 2.83969 3.05887 3.10436 3.21824 3.41173 3.42112 3.44112 3.64368 3.68620 3.74779 3.77771 3.83446 3.85164 3.99303 4.05730 4.06566 4.15097 4.18351 4.25951 4.29956 4.33708 4.39146 4.43847 4.45087 4.52766 4.68225 4.69512 4.75850 4.77805 4.88949 4.97817 5.07426 5.13754 5.23704 5.53341 5.62796 5.78670 5.83851 5.88157 6.05351 6.26360 6.34528 6.58963 6.90531 7.50913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.037 4.037 3 Si 0.678 3.322 4 C -0.150 4.150 5 C 0.071 3.929 6 N -0.466 5.466 7 C 0.092 3.908 8 C 0.491 3.509 9 O -0.510 6.510 10 N -0.730 5.730 11 C 0.132 3.868 12 C -0.130 4.130 13 H 0.102 0.898 14 C -0.135 4.135 15 C 0.111 3.889 16 H 0.127 0.873 17 N -0.274 5.274 18 C -0.053 4.053 19 C -0.049 4.049 20 N -0.270 5.270 21 N -0.081 5.081 22 C -0.130 4.130 23 C 0.109 3.891 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.065 4.065 28 C -0.086 4.086 29 H 0.375 0.625 30 H 0.072 0.928 31 H -0.259 1.259 32 H -0.255 1.255 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.188 0.812 42 H 0.191 0.809 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -0.280 0.716 1.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.148 4.148 3 Si 0.579 3.421 4 C -0.157 4.157 5 C -0.054 4.054 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.275 3.725 9 O -0.383 6.383 10 N -0.383 5.383 11 C 0.008 3.992 12 C -0.148 4.148 13 H 0.121 0.879 14 C -0.174 4.174 15 C 0.008 3.992 16 H 0.145 0.855 17 N -0.068 5.068 18 C -0.204 4.204 19 C -0.206 4.206 20 N -0.135 5.135 21 N -0.060 5.060 22 C -0.169 4.169 23 C 0.005 3.995 24 C -0.148 4.148 25 C -0.116 4.116 26 C -0.165 4.165 27 C -0.083 4.083 28 C -0.090 4.090 29 H 0.223 0.777 30 H 0.090 0.910 31 H -0.184 1.184 32 H -0.180 1.180 33 H 0.186 0.814 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.236 0.764 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.205 0.795 42 H 0.208 0.792 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.133 0.867 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.204 0.012 0.929 0.951 hybrid contribution -2.449 0.059 -0.121 2.453 sum -2.245 0.072 0.807 2.386 Atomic orbital electron populations 1.86639 1.18324 1.79998 1.49400 1.24015 0.83802 1.09790 0.97160 0.95109 0.91781 0.74641 0.80527 1.19429 1.08543 0.91609 0.96095 1.21506 1.01020 0.93911 0.88939 1.43158 1.52431 1.04671 1.14731 1.21575 0.90594 1.05875 0.85369 1.21018 0.89478 0.77598 0.84449 1.90826 1.74884 1.45310 1.27302 1.45917 1.07274 1.72996 1.12157 1.21348 0.78877 1.02775 0.96169 1.23004 0.96742 0.98996 0.96078 0.87943 1.23564 0.94403 0.99374 1.00016 1.22550 1.01656 0.92167 0.82805 0.85496 1.47187 1.05595 1.31949 1.22030 1.23571 0.95026 1.02152 0.99637 1.23694 0.92474 1.04111 1.00322 1.75188 1.12340 1.11768 1.14227 1.78395 1.12557 1.12427 1.02622 1.23341 0.95273 1.02702 0.95554 1.18148 1.01271 0.85859 0.94252 1.19936 1.05082 0.89198 1.00579 1.20817 0.98387 0.97920 0.94491 1.20663 1.02453 0.96893 0.96455 1.20277 0.97968 0.90939 0.99133 1.18943 1.03322 0.92758 0.93960 0.77725 0.90984 1.18401 1.17950 0.81406 0.85989 0.86414 0.76425 0.90623 0.90656 0.89579 0.86653 0.79526 0.79208 0.86726 0.89614 0.86745 0.85722 0.85922 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.24 12.86 -35.23 -0.45 -1.69 16 2 C -0.04 -0.05 3.05 36.01 0.11 0.06 16 3 Si 0.68 -0.23 30.79 -169.99 -5.23 -5.46 16 4 C -0.15 -0.46 5.61 -102.70 -0.58 -1.04 16 5 C 0.07 0.11 9.89 -16.73 -0.17 -0.06 16 6 N -0.47 -0.54 2.27 -115.71 -0.26 -0.80 16 7 C 0.09 -0.29 6.48 -5.20 -0.03 -0.33 16 8 C 0.49 -0.75 7.90 -10.99 -0.09 -0.84 16 9 O -0.51 -1.82 16.43 5.56 0.09 -1.73 16 10 N -0.73 3.60 5.56 -60.29 -0.33 3.27 16 11 C 0.13 -0.59 5.50 -4.04 -0.02 -0.61 16 12 C -0.13 0.80 3.33 -89.81 -0.30 0.50 16 13 H 0.10 -0.66 6.99 -51.93 -0.36 -1.02 16 14 C -0.14 0.87 6.89 -25.83 -0.18 0.69 16 15 C 0.11 -0.43 5.11 -67.02 -0.34 -0.78 16 16 H 0.13 -0.53 8.14 -51.93 -0.42 -0.96 16 17 N -0.27 0.17 3.52 -53.88 -0.19 -0.02 16 18 C -0.05 0.12 9.69 -17.05 -0.17 -0.05 16 19 C -0.05 -0.01 12.05 -17.74 -0.21 -0.22 16 20 N -0.27 -1.14 12.41 30.24 0.38 -0.77 16 21 N -0.08 -0.29 13.16 60.35 0.79 0.51 16 22 C -0.13 0.63 7.44 -25.91 -0.19 0.44 16 23 C 0.11 0.36 6.81 -83.99 -0.57 -0.22 16 24 C -0.13 -0.26 10.00 -39.43 -0.39 -0.66 16 25 C -0.10 -0.17 10.01 -39.54 -0.40 -0.57 16 26 C -0.15 -0.33 9.97 -39.95 -0.40 -0.73 16 27 C -0.06 -0.22 10.05 -39.65 -0.40 -0.62 16 28 C -0.09 -0.37 6.35 -105.14 -0.67 -1.04 16 29 H 0.38 -0.70 8.74 45.56 0.40 -0.30 16 30 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 31 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 32 H -0.25 -0.44 7.04 56.52 0.40 -0.04 16 33 H 0.17 -0.19 6.30 -52.49 -0.33 -0.52 16 34 H 0.12 -0.76 8.12 -51.93 -0.42 -1.18 16 35 H 0.12 -0.63 8.14 -51.93 -0.42 -1.05 16 36 H 0.40 -3.22 8.47 -40.82 -0.35 -3.57 16 37 H 0.08 -0.27 7.87 -51.93 -0.41 -0.68 16 38 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 39 H 0.09 -0.59 6.98 -51.93 -0.36 -0.96 16 40 H 0.12 -0.81 7.92 -51.93 -0.41 -1.22 16 41 H 0.19 -1.20 6.74 -52.49 -0.35 -1.55 16 42 H 0.19 -0.54 8.06 -52.48 -0.42 -0.96 16 43 H 0.11 -0.68 8.10 -51.93 -0.42 -1.10 16 44 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 45 H 0.11 -0.02 8.06 -52.49 -0.42 -0.44 16 46 H 0.12 -0.06 8.06 -52.48 -0.42 -0.49 16 47 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 48 H 0.12 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 404.33 15.07 6.09 6.09 Total: 0.00 -14.41 404.33 -10.55 -24.96 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: -6.44 Total: -18.29 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.99 Total: -6.07 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: 0.38 Total: 2.19 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.36 Total: -3.42 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.23 Total: -5.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -14.41 -10.55 -24.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.827 kcal (2) G-P(sol) polarization free energy of solvation -14.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds