Wall clock time and date at job start Tue Mar 9 2021 12:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.35996 * 120.07268 * 0.02562 * 4 3 2 6 6 C 1.42898 * 117.00326 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47463 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99560 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00220 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47442 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84982 * 316.19926 * 11 10 9 13 13 C 1.53784 * 113.61416 * 87.49886 * 11 10 9 14 14 C 1.53787 * 87.07805 * 139.98432 * 13 11 10 15 15 H 1.09000 * 113.61207 * 220.01732 * 14 13 11 16 16 N 1.46494 * 113.68847 * 89.13235 * 14 13 11 17 17 C 1.36888 * 126.39987 * 142.46447 * 16 14 13 18 18 C 1.34666 * 106.81990 * 179.97438 * 17 16 14 19 19 N 1.34138 * 108.02141 * 0.02562 * 18 17 16 20 20 C 1.30502 * 109.25219 * 359.72609 * 19 18 17 21 21 C 1.53778 * 113.61615 * 185.00030 * 11 10 9 22 22 C 1.38559 * 119.85488 * 179.69910 * 4 3 2 23 23 C 1.38247 * 120.00080 * 0.57732 * 22 4 3 24 24 N 1.48000 * 119.92825 * 179.74409 * 23 22 4 25 25 O 1.21793 * 120.00313 * 359.97438 * 24 23 22 26 26 O 1.21806 * 119.99643 * 179.97438 * 24 23 22 27 27 C 1.38252 * 120.14246 * 359.71520 * 23 22 4 28 28 C 1.50701 * 119.92592 * 179.97438 * 27 23 22 29 29 O 1.42898 * 109.46796 * 74.98438 * 28 27 23 30 30 Si 1.86299 * 109.47306 * 194.98296 * 28 27 23 31 31 C 1.38239 * 120.14671 * 359.97438 * 27 23 22 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 35 35 H 1.09001 * 109.46669 * 299.99736 * 6 5 4 36 36 H 1.08996 * 109.47326 * 59.99288 * 6 5 4 37 37 H 0.97002 * 119.99726 * 359.97438 * 9 7 6 38 38 H 1.09007 * 109.47397 * 300.00027 * 10 9 7 39 39 H 1.09007 * 109.47370 * 60.00074 * 10 9 7 40 40 H 1.08994 * 113.61692 * 254.53276 * 13 11 10 41 41 H 1.09004 * 113.61106 * 25.43895 * 13 11 10 42 42 H 1.07991 * 126.58797 * 0.03161 * 17 16 14 43 43 H 1.07993 * 125.98946 * 179.97438 * 18 17 16 44 44 H 1.08002 * 125.64692 * 180.29440 * 20 19 18 45 45 H 1.08997 * 113.61662 * 334.56313 * 21 11 10 46 46 H 1.09002 * 113.61727 * 105.47487 * 21 11 10 47 47 H 1.08000 * 120.00353 * 180.28897 * 22 4 3 48 48 H 1.09005 * 109.47251 * 314.98409 * 28 27 23 49 49 H 0.96707 * 113.99951 * 180.02562 * 29 28 27 50 50 H 1.48504 * 109.99991 * 300.00468 * 30 28 27 51 51 H 1.48501 * 110.00029 * 61.31801 * 30 28 27 52 52 H 1.08005 * 120.00155 * 179.97438 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1796 0.1476 0.0108 6 6 5.6003 0.3005 0.0171 7 6 6.2518 -1.0584 0.0227 8 8 5.5668 -2.0593 0.0219 9 7 7.5956 -1.1614 0.0286 10 6 8.2289 -2.4824 0.0335 11 6 9.7501 -2.3187 0.0390 12 1 10.0961 -1.5539 -0.6563 13 6 10.3506 -2.1891 1.4488 14 6 11.5010 -3.0826 0.9555 15 1 11.8307 -3.8159 1.6915 16 7 12.6116 -2.3364 0.3590 17 6 13.9437 -2.6272 0.4805 18 6 14.6122 -1.6927 -0.2219 19 7 13.7128 -0.8537 -0.7572 20 6 12.5121 -1.2363 -0.4179 21 6 10.5133 -3.6486 -0.0784 22 6 4.0604 2.5232 -0.0006 23 6 3.3031 3.6798 -0.0005 24 7 3.9717 5.0001 -0.0016 25 8 5.1878 5.0670 -0.0020 26 8 3.3057 6.0200 -0.0020 27 6 1.9225 3.6057 -0.0001 28 6 1.1018 4.8696 0.0006 29 8 1.1347 5.4595 -1.3005 30 14 -0.6593 4.4663 0.4552 31 6 1.2934 2.3748 -0.0002 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 5.9106 0.8489 -0.8724 36 1 5.9025 0.8516 0.9075 37 1 8.1434 -0.3609 0.0288 38 1 7.9189 -3.0308 0.9231 39 1 7.9265 -3.0337 -0.8569 40 1 10.6619 -1.1750 1.6993 41 1 9.7421 -2.6505 2.2267 42 1 14.3754 -3.4488 1.0326 43 1 15.6844 -1.6293 -0.3338 44 1 11.5916 -0.7521 -0.7087 45 1 9.9493 -4.5089 0.2820 46 1 10.9560 -3.8128 -1.0608 47 1 5.1387 2.5838 -0.0009 48 1 1.5135 5.5698 0.7276 49 1 0.6266 6.2791 -1.3738 50 1 -1.2320 3.5123 -0.5283 51 1 -0.7105 3.8812 1.8191 52 1 0.2147 2.3196 0.0005 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:31 Heat of formation + Delta-G solvation = 7.816122 kcal Electronic energy + Delta-G solvation = -39851.738815 eV Core-core repulsion = 34404.899016 eV Total energy + Delta-G solvation = -5446.839799 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.166 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.46760 -43.22229 -42.22846 -41.14011 -40.13219 -39.56214 -39.13103 -37.80891 -37.14372 -35.87214 -33.39932 -32.87296 -32.69286 -30.73856 -30.23202 -29.10059 -28.26593 -27.96111 -26.86197 -25.84984 -24.73330 -23.92985 -23.17381 -22.43728 -21.93321 -21.66986 -20.85467 -20.80084 -19.93653 -19.59208 -18.90100 -18.75346 -18.29633 -18.18243 -17.86893 -17.83846 -17.66598 -17.07178 -17.00135 -16.57486 -16.40312 -16.13351 -15.99227 -15.87989 -15.57087 -15.43564 -15.10448 -14.87241 -14.75703 -14.58214 -14.48538 -14.25355 -14.11823 -13.93944 -13.59209 -13.58120 -13.48089 -13.12029 -13.01704 -12.72631 -12.68766 -12.52740 -12.45377 -12.40477 -12.22500 -12.03455 -11.92740 -11.79169 -11.63106 -11.12015 -10.92259 -10.64140 -10.52610 -10.26745 -10.24669 -9.62518 -9.48825 -5.01351 -1.41091 -0.58203 0.09949 0.22337 1.08269 1.14251 1.16337 1.34392 1.56554 1.69533 1.76350 1.78988 1.79605 2.19325 2.26752 2.80937 3.02479 3.18376 3.21187 3.30500 3.32586 3.51012 3.57869 3.65730 3.70848 3.71883 3.76974 3.79537 3.89172 3.92135 3.96640 3.98744 4.06664 4.09786 4.20766 4.21815 4.22549 4.47731 4.49738 4.56411 4.56583 4.59667 4.64576 4.69132 4.72752 4.79177 4.88392 4.92655 5.16016 5.22011 5.29636 5.34853 5.43710 5.80052 5.88118 6.28064 6.32888 6.48959 6.83343 7.01984 7.12403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.304 6.304 3 C 0.163 3.837 4 C 0.104 3.896 5 O -0.290 6.290 6 C 0.023 3.977 7 C 0.516 3.484 8 O -0.568 6.568 9 N -0.707 5.707 10 C 0.133 3.867 11 C -0.121 4.121 12 H 0.108 0.892 13 C -0.130 4.130 14 C 0.098 3.902 15 H 0.130 0.870 16 N -0.439 5.439 17 C -0.047 4.047 18 C -0.064 4.064 19 N -0.541 5.541 20 C 0.173 3.827 21 C -0.130 4.130 22 C -0.107 4.107 23 C -0.043 4.043 24 N 0.036 4.964 25 O -0.192 6.192 26 O -0.140 6.140 27 C -0.004 4.004 28 C -0.101 4.101 29 O -0.553 6.553 30 Si 0.778 3.222 31 C -0.187 4.187 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.421 0.579 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.200 0.800 43 H 0.174 0.826 44 H 0.224 0.776 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.191 0.809 48 H 0.101 0.899 49 H 0.408 0.592 50 H -0.268 1.268 51 H -0.277 1.277 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -1.610 3.939 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.216 6.216 3 C 0.115 3.885 4 C 0.057 3.943 5 O -0.202 6.202 6 C -0.054 4.054 7 C 0.302 3.698 8 O -0.446 6.446 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.139 4.139 12 H 0.126 0.874 13 C -0.168 4.168 14 C -0.005 4.005 15 H 0.148 0.852 16 N -0.121 5.121 17 C -0.180 4.180 18 C -0.210 4.210 19 N -0.260 5.260 20 C -0.109 4.109 21 C -0.169 4.169 22 C -0.126 4.126 23 C -0.127 4.127 24 N 0.552 4.448 25 O -0.399 6.399 26 O -0.360 6.360 27 C -0.006 4.006 28 C -0.209 4.209 29 O -0.364 6.364 30 Si 0.679 3.321 31 C -0.206 4.206 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.217 0.783 43 H 0.191 0.809 44 H 0.240 0.760 45 H 0.138 0.862 46 H 0.090 0.910 47 H 0.208 0.792 48 H 0.119 0.881 49 H 0.260 0.740 50 H -0.195 1.195 51 H -0.203 1.203 52 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.097 -3.933 3.619 7.386 hybrid contribution 1.043 0.135 0.271 1.086 sum -4.054 -3.798 3.891 6.782 Atomic orbital electron populations 1.23679 0.75288 1.07157 1.02860 1.86310 1.24218 1.24578 1.86494 1.18658 0.89600 0.85983 0.94286 1.17862 0.88335 0.85488 1.02659 1.86298 1.18765 1.26520 1.88656 1.22983 0.78492 0.96546 1.07417 1.20223 0.83194 0.90192 0.76199 1.90791 1.64028 1.39772 1.50009 1.45670 1.04957 1.10937 1.74616 1.21387 0.91313 0.83793 1.02469 1.22992 0.92674 0.99639 0.98618 0.87372 1.23485 0.95107 1.01042 0.97130 1.22545 0.85319 0.95504 0.97153 0.85222 1.45443 1.06581 1.22498 1.37593 1.23172 0.82939 1.04574 1.07360 1.22653 1.00268 0.95455 1.02646 1.70285 1.00488 1.29461 1.25785 1.25423 0.98649 0.89859 0.97001 1.23369 0.96042 0.97905 0.99563 1.20973 1.03236 0.87946 1.00472 1.20540 0.92382 0.82769 1.17025 1.43452 1.00864 1.03002 0.97469 1.94523 0.96139 1.93946 1.55333 1.94480 1.64611 1.24855 1.52076 1.19322 0.90890 0.96164 0.94257 1.25235 1.11073 0.93381 0.91194 1.86386 1.77589 1.45341 1.27061 0.93517 0.75721 0.85900 0.76937 1.21048 1.01317 0.89536 1.08707 0.85019 0.90951 0.90876 0.85450 0.85154 0.74153 0.90962 0.91984 0.90028 0.86387 0.78276 0.80859 0.76010 0.86223 0.91042 0.79207 0.88147 0.73960 1.19483 1.20265 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.51 10.28 -79.59 -0.82 -2.33 16 3 C 0.16 0.73 6.70 22.57 0.15 0.88 16 4 C 0.10 0.39 6.70 22.57 0.15 0.54 16 5 O -0.29 -1.45 9.45 -67.09 -0.63 -2.08 16 6 C 0.02 -0.09 5.22 71.24 0.37 0.28 16 7 C 0.52 0.28 7.91 87.66 0.69 0.97 16 8 O -0.57 -6.81 16.50 15.99 0.26 -6.55 16 9 N -0.71 5.13 5.56 -463.06 -2.57 2.56 16 10 C 0.13 -0.92 5.51 86.38 0.48 -0.44 16 11 C -0.12 1.32 3.25 -10.27 -0.03 1.29 16 12 H 0.11 -1.28 5.64 -2.39 -0.01 -1.29 16 13 C -0.13 1.48 7.06 31.12 0.22 1.70 16 14 C 0.10 -0.88 4.87 45.52 0.22 -0.66 16 15 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 16 N -0.44 1.12 2.95 -503.80 -1.48 -0.37 16 17 C -0.05 0.01 11.58 83.08 0.96 0.98 16 18 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 19 N -0.54 -4.64 11.25 -200.30 -2.25 -6.89 16 20 C 0.17 0.17 11.21 180.26 2.02 2.19 16 21 C -0.13 1.28 7.35 31.12 0.23 1.51 16 22 C -0.11 -0.17 8.54 22.35 0.19 0.02 16 23 C -0.04 -0.24 6.85 36.38 0.25 0.01 16 24 N 0.04 0.33 4.45 -46.46 -0.21 0.12 16 25 O -0.19 -1.93 18.44 18.89 0.35 -1.59 16 26 O -0.14 -1.33 14.62 25.10 0.37 -0.96 16 27 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 28 C -0.10 0.01 1.73 71.24 0.12 0.13 16 29 O -0.55 -0.30 11.77 -129.60 -1.52 -1.83 16 30 Si 0.78 -4.11 30.19 68.60 2.07 -2.04 16 31 C -0.19 -0.46 7.65 22.35 0.17 -0.29 16 32 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 34 H 0.07 -0.43 7.66 -2.38 -0.02 -0.45 16 35 H 0.13 -1.23 7.65 -2.39 -0.02 -1.25 16 36 H 0.13 -1.35 7.68 -2.39 -0.02 -1.37 16 37 H 0.42 -5.89 8.47 -92.71 -0.79 -6.67 16 38 H 0.07 -0.39 7.85 -2.38 -0.02 -0.41 16 39 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.08 -0.83 8.03 -2.39 -0.02 -0.85 16 41 H 0.12 -1.53 7.90 -2.39 -0.02 -1.54 16 42 H 0.20 -1.33 8.06 -2.92 -0.02 -1.35 16 43 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 44 H 0.22 -1.29 5.85 -2.91 -0.02 -1.31 16 45 H 0.12 -1.43 8.10 -2.39 -0.02 -1.45 16 46 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.19 -0.81 5.85 -2.91 -0.02 -0.83 16 48 H 0.10 -0.05 6.07 -2.38 -0.01 -0.06 16 49 H 0.41 -3.88 8.74 -74.05 -0.65 -4.53 16 50 H -0.27 0.51 6.74 99.48 0.67 1.18 16 51 H -0.28 0.26 7.11 99.48 0.71 0.96 16 52 H 0.17 -0.16 3.13 -2.91 -0.01 -0.17 16 Total: 0.00 -37.10 433.37 1.35 -35.75 By element: Atomic # 1 Polarization: -24.14 SS G_CDS: -0.40 Total: -24.54 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 8.20 Total: 10.75 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -6.52 Total: -4.58 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -2.00 Total: -15.33 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.07 Total: -2.04 kcal Total: -37.10 1.35 -35.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.565 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds