Wall clock time and date at job start Tue Mar 9 2021 12:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.39161 * 120.07553 * 180.02562 * 3 2 1 5 5 O 1.36003 * 120.06896 * 359.97438 * 4 3 2 6 6 C 1.42892 * 116.99592 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46959 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00180 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00028 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47017 * 180.02562 * 10 9 7 12 12 H 1.09004 * 112.84496 * 43.80429 * 11 10 9 13 13 C 1.53778 * 113.61196 * 174.99730 * 11 10 9 14 14 C 1.53787 * 87.08035 * 140.06532 * 13 11 10 15 15 H 1.08994 * 113.61447 * 220.02014 * 14 13 11 16 16 N 1.46496 * 113.61210 * 89.11438 * 14 13 11 17 17 C 1.36880 * 126.39903 * 119.71918 * 16 14 13 18 18 C 1.34665 * 106.82356 * 179.84079 * 17 16 14 19 19 N 1.34125 * 108.01550 * 0.42087 * 18 17 16 20 20 C 1.30498 * 109.25803 * 359.73237 * 19 18 17 21 21 C 1.53778 * 113.68969 * 272.53495 * 11 10 9 22 22 C 1.38560 * 119.85478 * 180.24986 * 4 3 2 23 23 C 1.38237 * 120.00010 * 359.47191 * 22 4 3 24 24 C 1.38260 * 120.14692 * 0.50452 * 23 22 4 25 25 C 1.50700 * 119.92753 * 179.74150 * 24 23 22 26 26 O 1.42891 * 109.47494 * 245.02463 * 25 24 23 27 27 Si 1.86298 * 109.47185 * 5.02898 * 25 24 23 28 28 C 1.38243 * 120.14345 * 359.77241 * 24 23 22 29 29 H 1.08993 * 109.47241 * 60.00103 * 1 2 3 30 30 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47073 * 299.99868 * 1 2 3 32 32 H 1.08994 * 109.47657 * 59.99487 * 6 5 4 33 33 H 1.08999 * 109.46987 * 299.99415 * 6 5 4 34 34 H 0.96999 * 119.99784 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47253 * 60.00133 * 10 9 7 36 36 H 1.08999 * 109.47048 * 300.00272 * 10 9 7 37 37 H 1.08998 * 113.61879 * 25.52015 * 13 11 10 38 38 H 1.08999 * 113.61887 * 254.61122 * 13 11 10 39 39 H 1.08010 * 126.58616 * 359.97438 * 17 16 14 40 40 H 1.07996 * 125.99482 * 180.11584 * 18 17 16 41 41 H 1.08005 * 125.64863 * 180.02562 * 20 19 18 42 42 H 1.08993 * 113.61229 * 105.46192 * 21 11 10 43 43 H 1.09000 * 113.61263 * 334.55842 * 21 11 10 44 44 H 1.07996 * 120.00033 * 179.72048 * 22 4 3 45 45 H 1.07997 * 119.93147 * 180.25531 * 23 22 4 46 46 H 1.09004 * 109.46539 * 125.02224 * 25 24 23 47 47 H 0.96695 * 114.00186 * 180.02562 * 26 25 24 48 48 H 1.48500 * 109.99971 * 299.99700 * 27 25 24 49 49 H 1.48506 * 110.00306 * 61.31320 * 27 25 24 50 50 H 1.08004 * 119.99894 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1475 -0.0005 6 6 5.6003 0.3005 -0.0005 7 6 6.2518 -1.0583 0.0001 8 8 5.5670 -2.0592 0.0000 9 7 7.5957 -1.1614 -0.0003 10 6 8.2291 -2.4823 -0.0003 11 6 9.7503 -2.3185 -0.0001 12 1 10.0934 -1.5524 0.6952 13 6 10.5130 -3.6482 0.1228 14 6 11.5060 -3.0832 -0.9067 15 1 11.8396 -3.8173 -1.6400 16 7 12.6123 -2.3346 -0.3052 17 6 13.9450 -2.6272 -0.4139 18 6 14.6088 -1.6869 0.2851 19 7 13.7054 -0.8484 0.8142 20 6 12.5074 -1.2301 0.4648 21 6 10.3581 -2.1905 -1.4069 22 6 4.0603 2.5232 0.0047 23 6 3.3030 3.6797 -0.0006 24 6 1.9224 3.6057 -0.0006 25 6 1.1017 4.8696 -0.0005 26 8 0.3652 4.9592 1.2207 27 14 2.2309 6.3433 -0.1543 28 6 1.2932 2.3747 0.0000 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.9066 0.8504 0.8893 33 1 5.9065 0.8502 -0.8906 34 1 8.1435 -0.3608 -0.0006 35 1 7.9226 -3.0323 -0.8900 36 1 7.9231 -3.0319 0.8899 37 1 9.9511 -4.5091 -0.2395 38 1 10.9506 -3.8112 1.1077 39 1 14.3806 -3.4524 -0.9579 40 1 15.6803 -1.6223 0.4035 41 1 11.5849 -0.7432 0.7447 42 1 10.6706 -1.1767 -1.6568 43 1 9.7537 -2.6528 -2.1874 44 1 5.1386 2.5839 0.0089 45 1 3.7908 4.6433 -0.0007 46 1 0.4092 4.8531 -0.8421 47 1 -0.1871 5.7499 1.2898 48 1 3.1801 6.3772 0.9872 49 1 2.9793 6.2783 -1.4354 50 1 0.2146 2.3196 0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:00 Heat of formation + Delta-G solvation = -3.188297 kcal Electronic energy + Delta-G solvation = -32817.375463 eV Core-core repulsion = 28201.074912 eV Total energy + Delta-G solvation = -4616.300551 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.23324 -41.92465 -41.01357 -40.00076 -39.31130 -38.81399 -37.05571 -35.85513 -33.39014 -32.27314 -31.64481 -30.57753 -30.19164 -28.62294 -28.12763 -26.86972 -26.19136 -24.73615 -23.62666 -22.54094 -22.43746 -21.87412 -21.59298 -20.81723 -19.84321 -18.62874 -18.48310 -18.23263 -17.78737 -17.64341 -17.55344 -17.12470 -16.77525 -16.35892 -16.31553 -16.02833 -15.96311 -15.84861 -15.54322 -15.49175 -15.16208 -14.86552 -14.62350 -14.46110 -14.32644 -14.21827 -14.05807 -13.66958 -13.59566 -13.55957 -13.48672 -13.10684 -12.82951 -12.46090 -12.32737 -12.25438 -12.10103 -12.04072 -11.85278 -11.78508 -11.63636 -11.06940 -10.92808 -10.53435 -10.31162 -10.25339 -9.91571 -9.49525 -9.04286 -4.90664 0.03068 0.09896 1.07751 1.31700 1.38402 1.39945 1.68004 1.78189 1.98479 2.18507 2.20976 2.39027 2.48214 3.20479 3.30028 3.37868 3.48284 3.56634 3.63990 3.66541 3.69625 3.73226 3.84540 3.91762 3.95909 3.99768 4.09886 4.14928 4.20335 4.22205 4.26155 4.29063 4.45876 4.46810 4.48773 4.55897 4.63909 4.64054 4.68518 4.72631 4.78452 4.84546 4.87803 4.91917 4.92394 5.16708 5.22342 5.30186 5.34832 5.42409 5.79342 5.85231 6.27155 6.32183 6.43115 6.91247 7.06038 7.11459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.085 3.915 4 C 0.085 3.915 5 O -0.309 6.309 6 C 0.031 3.969 7 C 0.513 3.487 8 O -0.571 6.571 9 N -0.708 5.708 10 C 0.133 3.867 11 C -0.120 4.120 12 H 0.109 0.891 13 C -0.131 4.131 14 C 0.099 3.901 15 H 0.130 0.870 16 N -0.439 5.439 17 C -0.047 4.047 18 C -0.063 4.063 19 N -0.541 5.541 20 C 0.173 3.827 21 C -0.130 4.130 22 C -0.160 4.160 23 C -0.134 4.134 24 C -0.085 4.085 25 C -0.080 4.080 26 O -0.565 6.565 27 Si 0.777 3.223 28 C -0.148 4.148 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.420 0.580 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.200 0.800 40 H 0.175 0.825 41 H 0.224 0.776 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.172 0.828 45 H 0.132 0.868 46 H 0.094 0.906 47 H 0.404 0.596 48 H -0.292 1.292 49 H -0.285 1.285 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 4.056 -4.062 5.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.039 3.961 4 C 0.040 3.960 5 O -0.223 6.223 6 C -0.047 4.047 7 C 0.299 3.701 8 O -0.449 6.449 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.139 4.139 12 H 0.127 0.873 13 C -0.169 4.169 14 C -0.004 4.004 15 H 0.148 0.852 16 N -0.121 5.121 17 C -0.181 4.181 18 C -0.210 4.210 19 N -0.260 5.260 20 C -0.110 4.110 21 C -0.167 4.167 22 C -0.179 4.179 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.190 4.190 26 O -0.375 6.375 27 Si 0.682 3.318 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.258 0.742 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.217 0.783 40 H 0.192 0.808 41 H 0.240 0.760 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.189 0.811 45 H 0.149 0.851 46 H 0.111 0.889 47 H 0.255 0.745 48 H -0.220 1.220 49 H -0.212 1.212 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.516 3.243 -3.611 4.881 hybrid contribution 0.029 -0.900 -0.324 0.957 sum -0.487 2.344 -3.935 4.606 Atomic orbital electron populations 1.23353 0.76432 1.05517 1.02332 1.86194 1.23365 1.26104 1.88876 1.18631 0.89722 0.85829 1.01904 1.18488 0.88452 0.86213 1.02879 1.86223 1.18222 1.28561 1.89268 1.22795 0.79391 0.95734 1.06741 1.20411 0.83165 0.90502 0.75989 1.90776 1.64155 1.39994 1.50010 1.45659 1.04927 1.10815 1.74829 1.21372 0.91412 0.83906 1.02317 1.22988 0.92525 0.99664 0.98679 0.87338 1.23371 0.96015 0.97906 0.99639 1.22537 0.85400 0.95464 0.97033 0.85166 1.45441 1.06622 1.22198 1.37844 1.23180 0.82937 1.04472 1.07469 1.22652 1.00248 0.95375 1.02720 1.70276 1.00425 1.29667 1.25631 1.25417 0.98712 0.89833 0.96988 1.23478 0.95073 1.01072 0.97107 1.21256 1.02000 0.89512 1.05110 1.20824 0.93313 0.98243 1.02759 1.19488 0.93419 0.94508 1.01148 1.24871 1.01569 1.02040 0.90475 1.86445 1.63808 1.50265 1.36984 0.94283 0.78747 0.82343 0.76420 1.21084 1.00995 0.90047 1.04514 0.91275 0.86744 0.91742 0.86004 0.85689 0.74205 0.91146 0.92174 0.86295 0.91018 0.78270 0.80814 0.76025 0.89947 0.86465 0.81117 0.85119 0.88852 0.74511 1.21987 1.21191 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.96 10.28 -79.54 -0.82 -4.77 16 3 C 0.08 0.88 6.70 22.57 0.15 1.03 16 4 C 0.09 0.75 6.70 22.57 0.15 0.90 16 5 O -0.31 -3.25 9.45 -67.17 -0.64 -3.88 16 6 C 0.03 -0.02 5.22 71.24 0.37 0.35 16 7 C 0.51 1.84 7.91 87.66 0.69 2.53 16 8 O -0.57 -8.96 16.50 16.02 0.26 -8.69 16 9 N -0.71 3.76 5.56 -463.07 -2.57 1.19 16 10 C 0.13 -0.69 5.51 86.38 0.48 -0.21 16 11 C -0.12 1.20 3.25 -10.27 -0.03 1.16 16 12 H 0.11 -1.20 5.64 -2.38 -0.01 -1.22 16 13 C -0.13 1.18 7.35 31.12 0.23 1.41 16 14 C 0.10 -0.84 4.88 45.52 0.22 -0.62 16 15 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 16 N -0.44 1.02 2.94 -503.80 -1.48 -0.47 16 17 C -0.05 0.01 11.58 83.09 0.96 0.97 16 18 C -0.06 -0.32 11.87 83.52 0.99 0.67 16 19 N -0.54 -4.60 11.25 -200.32 -2.25 -6.85 16 20 C 0.17 0.18 11.19 180.26 2.02 2.20 16 21 C -0.13 1.39 7.06 31.12 0.22 1.61 16 22 C -0.16 -0.49 9.04 22.35 0.20 -0.29 16 23 C -0.13 -0.58 8.66 22.27 0.19 -0.39 16 24 C -0.09 -0.43 5.38 -19.86 -0.11 -0.54 16 25 C -0.08 0.09 2.79 71.24 0.20 0.29 16 26 O -0.56 0.41 12.81 -148.98 -1.91 -1.50 16 27 Si 0.78 -2.70 29.84 68.60 2.05 -0.66 16 28 C -0.15 -0.95 8.67 22.35 0.19 -0.76 16 29 H 0.07 -0.06 7.66 -2.39 -0.02 -0.07 16 30 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.06 0.03 7.66 -2.38 -0.02 0.01 16 32 H 0.12 -0.82 7.65 -2.39 -0.02 -0.84 16 33 H 0.13 -0.93 7.67 -2.39 -0.02 -0.95 16 34 H 0.42 -5.30 8.47 -92.71 -0.79 -6.09 16 35 H 0.07 -0.25 7.85 -2.39 -0.02 -0.26 16 36 H 0.06 -0.09 8.14 -2.39 -0.02 -0.10 16 37 H 0.12 -1.30 8.10 -2.39 -0.02 -1.32 16 38 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.20 -1.30 8.06 -2.91 -0.02 -1.33 16 40 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.22 -1.27 5.86 -2.91 -0.02 -1.28 16 42 H 0.08 -0.81 8.02 -2.39 -0.02 -0.83 16 43 H 0.12 -1.41 7.90 -2.39 -0.02 -1.43 16 44 H 0.17 -0.86 6.30 -2.91 -0.02 -0.88 16 45 H 0.13 0.27 4.85 -2.91 -0.01 0.26 16 46 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 47 H 0.40 -4.61 8.74 -74.06 -0.65 -5.26 16 48 H -0.29 -1.00 7.05 99.48 0.70 -0.30 16 49 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 50 H 0.15 0.42 6.30 -2.91 -0.02 0.40 16 Total: 0.00 -37.97 411.69 0.49 -37.49 By element: Atomic # 1 Polarization: -22.94 SS G_CDS: -0.40 Total: -23.34 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 8.24 Total: 11.49 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -6.31 Total: -6.13 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -3.10 Total: -18.85 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.05 Total: -0.66 kcal Total: -37.97 0.49 -37.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -37.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds