Wall clock time and date at job start Tue Mar 9 2021 13:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 109.15374 * 2 1 4 4 C 1.85254 * 109.30796 * 119.51598 * 2 1 3 5 5 C 1.54353 * 110.16559 * 202.02809 * 4 2 1 6 6 C 1.46880 * 111.74584 * 289.10946 * 5 4 2 7 7 C 1.51994 * 115.18028 * 66.46715 * 6 5 4 8 8 N 1.44758 * 108.99497 * 266.91298 * 7 6 5 9 9 C 1.34780 * 121.25509 * 283.04033 * 8 7 6 10 10 O 1.21571 * 120.00434 * 184.51440 * 9 8 7 11 11 C 1.47695 * 119.99795 * 4.51975 * 9 8 7 12 12 C 1.39623 * 120.15706 * 303.82465 * 11 9 8 13 13 C 1.38112 * 119.85553 * 180.02562 * 12 11 9 14 14 F 1.35099 * 119.91722 * 179.97438 * 13 12 11 15 15 C 1.38614 * 120.16145 * 0.25217 * 13 12 11 16 16 C 1.50694 * 119.83937 * 179.74712 * 15 13 12 17 17 O 1.42908 * 109.47275 * 285.00044 * 16 15 13 18 18 Si 1.86300 * 109.47122 * 165.00117 * 16 15 13 19 19 H 1.48502 * 109.47162 * 59.99836 * 18 16 15 20 20 H 1.48508 * 109.47062 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47330 * 299.99818 * 18 16 15 22 22 C 1.38234 * 120.31724 * 359.48913 * 15 13 12 23 23 C 1.38268 * 120.14492 * 0.51250 * 22 15 13 24 24 F 1.35093 * 120.08628 * 179.76517 * 23 22 15 25 25 C 1.48289 * 117.49450 * 103.32172 * 8 7 6 26 26 H 1.08995 * 109.47425 * 300.48870 * 1 2 3 27 27 H 1.09000 * 109.46881 * 60.48421 * 1 2 3 28 28 H 1.08996 * 109.47352 * 180.48000 * 1 2 3 29 29 H 1.09005 * 109.46844 * 170.37164 * 3 2 1 30 30 H 1.09001 * 109.46758 * 290.36288 * 3 2 1 31 31 H 1.08996 * 109.47159 * 50.36651 * 3 2 1 32 32 H 1.08990 * 109.35441 * 81.81414 * 4 2 1 33 33 H 1.08998 * 109.24062 * 322.16295 * 4 2 1 34 34 H 1.09001 * 109.02252 * 168.53032 * 5 4 2 35 35 H 1.08995 * 109.02797 * 49.69396 * 5 4 2 36 36 H 1.09002 * 108.33910 * 304.99277 * 6 5 4 37 37 H 1.09002 * 108.34366 * 187.94756 * 6 5 4 38 38 H 1.09007 * 109.54864 * 147.06224 * 7 6 5 39 39 H 1.08998 * 109.55559 * 26.76990 * 7 6 5 40 40 H 1.08003 * 120.06948 * 0.02562 * 12 11 9 41 41 H 1.09000 * 109.47528 * 45.00012 * 16 15 13 42 42 H 0.96698 * 113.99420 * 300.00054 * 17 16 15 43 43 H 1.07994 * 119.92761 * 180.23505 * 22 15 13 44 44 H 1.08998 * 109.64445 * 81.81675 * 25 8 7 45 45 H 1.09002 * 109.63785 * 202.44675 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7598 0.0000 4 6 2.4755 -0.8614 1.5214 5 6 3.9190 -0.4171 1.8397 6 6 4.8803 -0.9531 0.8671 7 6 4.7374 -0.4153 -0.5473 8 7 3.8828 -1.3044 -1.3053 9 6 4.3415 -2.4799 -1.7791 10 8 3.6302 -3.1712 -2.4820 11 6 5.7084 -2.9281 -1.4443 12 6 6.8050 -2.1159 -1.7396 13 6 8.0805 -2.5415 -1.4242 14 9 9.1425 -1.7569 -1.7099 15 6 8.2741 -3.7742 -0.8206 16 6 9.6694 -4.2338 -0.4848 17 8 10.3376 -4.6409 -1.6807 18 14 9.5822 -5.6708 0.6977 19 1 8.8320 -6.7863 0.0667 20 1 10.9573 -6.1241 1.0281 21 1 8.8880 -5.2479 1.9403 22 6 7.1930 -4.5816 -0.5203 23 6 5.9104 -4.1684 -0.8303 24 9 4.8551 -4.9604 -0.5406 25 6 2.4855 -0.8704 -1.5465 26 1 -0.3634 0.5214 0.8855 27 1 -0.3633 0.5063 -0.8943 28 1 -0.3634 -1.0276 0.0086 29 1 3.5506 1.7706 0.1719 30 1 2.2556 2.2203 -0.9635 31 1 1.9742 2.3181 0.7914 32 1 2.4568 -1.9389 1.3588 33 1 1.8273 -0.6114 2.3613 34 1 4.1876 -0.7690 2.8358 35 1 3.9674 0.6717 1.8240 36 1 4.7675 -2.0368 0.8350 37 1 5.8869 -0.7278 1.2197 38 1 5.7189 -0.3630 -1.0186 39 1 4.2927 0.5794 -0.5161 40 1 6.6561 -1.1570 -2.2136 41 1 10.2201 -3.4151 -0.0217 42 1 9.9020 -5.3678 -2.1465 43 1 7.3508 -5.5391 -0.0465 44 1 2.4558 -0.1845 -2.3930 45 1 1.8623 -1.7404 -1.7538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:42 Heat of formation + Delta-G solvation = -152.259128 kcal Electronic energy + Delta-G solvation = -29575.352485 eV Core-core repulsion = 25352.980549 eV Total energy + Delta-G solvation = -4222.371936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.09806 -50.06675 -41.60638 -39.96716 -38.18330 -37.70052 -35.03876 -33.46693 -31.44887 -30.18059 -29.48693 -28.67033 -28.40666 -26.70738 -25.59056 -24.48986 -23.40220 -21.91412 -20.86861 -19.29583 -18.87849 -18.61826 -17.88551 -17.53335 -17.25071 -16.85617 -16.70685 -16.45236 -16.36145 -15.97640 -15.73385 -15.55463 -15.44892 -15.08332 -14.84486 -14.74136 -14.36718 -14.22213 -14.00097 -13.96205 -13.79643 -13.65123 -13.49835 -13.41569 -13.12495 -13.03376 -12.95431 -12.65589 -12.38673 -12.31489 -11.97010 -11.88766 -11.74449 -11.33898 -11.00887 -10.93614 -10.66385 -10.62303 -10.51019 -9.81772 -9.55736 -0.67499 -0.35503 0.90518 1.25088 1.28091 1.35989 1.48970 1.52496 1.63711 1.75366 1.93484 2.06266 2.37399 2.75864 2.86594 3.03395 3.19897 3.31055 3.44358 3.56704 3.71835 3.84796 3.88845 4.09727 4.22465 4.27833 4.30980 4.34997 4.44106 4.51942 4.55253 4.57554 4.61221 4.63214 4.64160 4.65700 4.69071 4.78228 4.84368 4.90520 5.07204 5.17941 5.27833 5.30135 5.36503 5.41715 5.47553 6.20008 6.34423 6.99618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.011 2.989 3 C -0.455 4.455 4 C -0.411 4.411 5 C -0.105 4.105 6 C -0.146 4.146 7 C 0.071 3.929 8 N -0.583 5.583 9 C 0.561 3.439 10 O -0.515 6.515 11 C -0.121 4.121 12 C -0.101 4.101 13 C 0.121 3.879 14 F -0.119 7.119 15 C -0.110 4.110 16 C -0.083 4.083 17 O -0.529 6.529 18 Si 0.947 3.053 19 H -0.247 1.247 20 H -0.244 1.244 21 H -0.243 1.243 22 C -0.136 4.136 23 C 0.141 3.859 24 F -0.117 7.117 25 C -0.183 4.183 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.379 0.621 43 H 0.153 0.847 44 H 0.075 0.925 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 3.311 3.666 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.205 2.795 3 C -0.562 4.562 4 C -0.498 4.498 5 C -0.142 4.142 6 C -0.185 4.185 7 C -0.051 4.051 8 N -0.316 5.316 9 C 0.348 3.652 10 O -0.390 6.390 11 C -0.126 4.126 12 C -0.120 4.120 13 C 0.101 3.899 14 F -0.097 7.097 15 C -0.112 4.112 16 C -0.193 4.193 17 O -0.334 6.334 18 Si 0.768 3.232 19 H -0.171 1.171 20 H -0.167 1.167 21 H -0.166 1.166 22 C -0.155 4.155 23 C 0.121 3.879 24 F -0.095 7.095 25 C -0.350 4.350 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.226 0.774 43 H 0.170 0.830 44 H 0.094 0.906 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.539 2.678 4.009 4.852 hybrid contribution -0.384 -0.042 -0.561 0.681 sum 0.155 2.636 3.448 4.343 Atomic orbital electron populations 1.26075 1.19816 1.04899 1.04888 0.79531 0.67446 0.66835 0.65682 1.26482 1.06080 1.18578 1.05088 1.26257 1.00798 1.07837 1.14895 1.20215 0.93734 1.01128 0.99123 1.20828 1.00812 1.02097 0.94751 1.21833 0.96441 0.95093 0.91781 1.47535 1.12276 1.18423 1.53336 1.17871 0.85562 0.81617 0.80188 1.90856 1.57416 1.54498 1.36221 1.19798 0.94853 0.94692 1.03209 1.21167 0.89705 1.00703 1.00443 1.17169 0.83544 0.89427 0.99748 1.91586 1.54277 1.72848 1.90999 1.20398 0.97155 0.93697 0.99907 1.25047 0.89789 1.09191 0.95318 1.86601 1.51944 1.56779 1.38043 0.85709 0.82071 0.76934 0.78488 1.17051 1.16736 1.16646 1.20977 0.90107 1.01578 1.02833 1.17378 0.84067 0.88226 0.98254 1.91603 1.54929 1.72303 1.90659 1.27235 0.84752 1.07430 1.15535 0.90742 0.90884 0.90943 0.90539 0.90843 0.90548 0.90589 0.90205 0.91518 0.91474 0.91594 0.90819 0.89666 0.87614 0.82580 0.85602 0.77379 0.82960 0.90615 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.86 16 2 Si 1.01 -3.32 10.34 -169.99 -1.76 -5.08 16 3 C -0.46 1.61 7.85 101.05 0.79 2.40 16 4 C -0.41 0.89 4.74 37.87 0.18 1.07 16 5 C -0.10 0.26 5.28 -28.95 -0.15 0.11 16 6 C -0.15 0.33 4.84 -30.17 -0.15 0.18 16 7 C 0.07 -0.17 4.92 -5.49 -0.03 -0.20 16 8 N -0.58 -0.15 2.60 -114.10 -0.30 -0.44 16 9 C 0.56 1.79 6.54 -12.40 -0.08 1.71 16 10 O -0.51 -3.74 16.61 5.30 0.09 -3.65 16 11 C -0.12 -0.17 4.04 -104.91 -0.42 -0.59 16 12 C -0.10 0.05 7.99 -39.11 -0.31 -0.26 16 13 C 0.12 -0.02 7.23 -39.49 -0.29 -0.30 16 14 F -0.12 -0.12 16.73 2.25 0.04 -0.08 16 15 C -0.11 0.08 5.27 -104.49 -0.55 -0.47 16 16 C -0.08 0.12 2.44 36.00 0.09 0.21 16 17 O -0.53 0.25 12.88 -35.23 -0.45 -0.21 16 18 Si 0.95 -1.86 25.47 -169.99 -4.33 -6.19 16 19 H -0.25 0.50 6.73 56.52 0.38 0.88 16 20 H -0.24 0.12 7.11 56.52 0.40 0.53 16 21 H -0.24 0.38 7.11 56.52 0.40 0.78 16 22 C -0.14 0.06 8.62 -39.57 -0.34 -0.28 16 23 C 0.14 0.23 7.28 -38.97 -0.28 -0.06 16 24 F -0.12 -0.41 16.71 2.25 0.04 -0.38 16 25 C -0.18 0.12 5.33 60.83 0.32 0.44 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.08 -0.31 4.87 -51.93 -0.25 -0.56 16 30 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H 0.08 -0.06 7.91 -51.93 -0.41 -0.47 16 33 H 0.08 -0.20 7.95 -51.93 -0.41 -0.61 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.07 -0.24 6.35 -51.93 -0.33 -0.57 16 36 H 0.07 -0.04 6.78 -51.93 -0.35 -0.39 16 37 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 38 H 0.09 -0.29 4.73 -51.92 -0.25 -0.54 16 39 H 0.11 -0.42 3.50 -51.93 -0.18 -0.60 16 40 H 0.16 -0.37 6.64 -52.48 -0.35 -0.72 16 41 H 0.13 -0.27 7.89 -51.93 -0.41 -0.68 16 42 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 43 H 0.15 -0.30 4.85 -52.49 -0.25 -0.55 16 44 H 0.08 -0.11 7.99 -51.93 -0.41 -0.52 16 45 H 0.10 0.10 7.26 -51.93 -0.38 -0.28 16 LS Contribution 354.84 15.07 5.35 5.35 Total: 0.00 -7.51 354.84 -7.00 -14.50 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: -5.32 Total: -9.65 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -0.35 Total: 5.83 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.30 Total: -0.44 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.37 Total: -3.86 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.08 Total: -0.46 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: -6.09 Total: -11.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -7.51 -7.00 -14.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.754 kcal (2) G-P(sol) polarization free energy of solvation -7.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds