Wall clock time and date at job start Tue Mar 9 2021 13:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 109.15374 * 2 1 4 4 C 1.85254 * 109.30796 * 119.51598 * 2 1 3 5 5 C 1.54353 * 110.16559 * 202.02809 * 4 2 1 6 6 C 1.46880 * 111.74584 * 289.10946 * 5 4 2 7 7 C 1.51994 * 115.18028 * 66.46715 * 6 5 4 8 8 N 1.44758 * 108.99497 * 266.91298 * 7 6 5 9 9 C 1.34780 * 121.25509 * 283.04033 * 8 7 6 10 10 O 1.21571 * 120.00434 * 184.51440 * 9 8 7 11 11 C 1.47695 * 119.99795 * 4.51975 * 9 8 7 12 12 C 1.39623 * 120.15706 * 303.82465 * 11 9 8 13 13 C 1.38112 * 119.85553 * 180.02562 * 12 11 9 14 14 F 1.35099 * 119.91722 * 179.97438 * 13 12 11 15 15 C 1.38614 * 120.16145 * 0.25217 * 13 12 11 16 16 C 1.50694 * 119.83937 * 179.74712 * 15 13 12 17 17 O 1.42908 * 109.47275 * 285.00044 * 16 15 13 18 18 Si 1.86300 * 109.47122 * 165.00117 * 16 15 13 19 19 H 1.48502 * 109.47162 * 59.99836 * 18 16 15 20 20 H 1.48508 * 109.47062 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47330 * 299.99818 * 18 16 15 22 22 C 1.38234 * 120.31724 * 359.48913 * 15 13 12 23 23 C 1.38268 * 120.14492 * 0.51250 * 22 15 13 24 24 F 1.35093 * 120.08628 * 179.76517 * 23 22 15 25 25 C 1.48289 * 117.49450 * 103.32172 * 8 7 6 26 26 H 1.08995 * 109.47425 * 300.48870 * 1 2 3 27 27 H 1.09000 * 109.46881 * 60.48421 * 1 2 3 28 28 H 1.08996 * 109.47352 * 180.48000 * 1 2 3 29 29 H 1.09005 * 109.46844 * 170.37164 * 3 2 1 30 30 H 1.09001 * 109.46758 * 290.36288 * 3 2 1 31 31 H 1.08996 * 109.47159 * 50.36651 * 3 2 1 32 32 H 1.08990 * 109.35441 * 81.81414 * 4 2 1 33 33 H 1.08998 * 109.24062 * 322.16295 * 4 2 1 34 34 H 1.09001 * 109.02252 * 168.53032 * 5 4 2 35 35 H 1.08995 * 109.02797 * 49.69396 * 5 4 2 36 36 H 1.09002 * 108.33910 * 304.99277 * 6 5 4 37 37 H 1.09002 * 108.34366 * 187.94756 * 6 5 4 38 38 H 1.09007 * 109.54864 * 147.06224 * 7 6 5 39 39 H 1.08998 * 109.55559 * 26.76990 * 7 6 5 40 40 H 1.08003 * 120.06948 * 0.02562 * 12 11 9 41 41 H 1.09000 * 109.47528 * 45.00012 * 16 15 13 42 42 H 0.96698 * 113.99420 * 300.00054 * 17 16 15 43 43 H 1.07994 * 119.92761 * 180.23505 * 22 15 13 44 44 H 1.08998 * 109.64445 * 81.81675 * 25 8 7 45 45 H 1.09002 * 109.63785 * 202.44675 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7598 0.0000 4 6 2.4755 -0.8614 1.5214 5 6 3.9190 -0.4171 1.8397 6 6 4.8803 -0.9531 0.8671 7 6 4.7374 -0.4153 -0.5473 8 7 3.8828 -1.3044 -1.3053 9 6 4.3415 -2.4799 -1.7791 10 8 3.6302 -3.1712 -2.4820 11 6 5.7084 -2.9281 -1.4443 12 6 6.8050 -2.1159 -1.7396 13 6 8.0805 -2.5415 -1.4242 14 9 9.1425 -1.7569 -1.7099 15 6 8.2741 -3.7742 -0.8206 16 6 9.6694 -4.2338 -0.4848 17 8 10.3376 -4.6409 -1.6807 18 14 9.5822 -5.6708 0.6977 19 1 8.8320 -6.7863 0.0667 20 1 10.9573 -6.1241 1.0281 21 1 8.8880 -5.2479 1.9403 22 6 7.1930 -4.5816 -0.5203 23 6 5.9104 -4.1684 -0.8303 24 9 4.8551 -4.9604 -0.5406 25 6 2.4855 -0.8704 -1.5465 26 1 -0.3634 0.5214 0.8855 27 1 -0.3633 0.5063 -0.8943 28 1 -0.3634 -1.0276 0.0086 29 1 3.5506 1.7706 0.1719 30 1 2.2556 2.2203 -0.9635 31 1 1.9742 2.3181 0.7914 32 1 2.4568 -1.9389 1.3588 33 1 1.8273 -0.6114 2.3613 34 1 4.1876 -0.7690 2.8358 35 1 3.9674 0.6717 1.8240 36 1 4.7675 -2.0368 0.8350 37 1 5.8869 -0.7278 1.2197 38 1 5.7189 -0.3630 -1.0186 39 1 4.2927 0.5794 -0.5161 40 1 6.6561 -1.1570 -2.2136 41 1 10.2201 -3.4151 -0.0217 42 1 9.9020 -5.3678 -2.1465 43 1 7.3508 -5.5391 -0.0465 44 1 2.4558 -0.1845 -2.3930 45 1 1.8623 -1.7404 -1.7538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:41 Heat of formation + Delta-G solvation = -146.960527 kcal Electronic energy + Delta-G solvation = -29575.122721 eV Core-core repulsion = 25352.980549 eV Total energy + Delta-G solvation = -4222.142171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.27361 -50.10582 -41.69023 -39.98748 -38.22866 -37.64966 -35.00277 -33.46931 -31.47485 -30.04339 -29.25911 -28.59177 -28.26504 -26.65801 -25.49239 -24.48389 -23.40129 -21.81121 -20.87709 -19.29465 -18.91505 -18.67688 -17.93870 -17.57524 -17.26892 -16.85623 -16.70330 -16.55295 -16.33287 -15.94078 -15.74519 -15.50154 -15.38193 -15.04659 -14.81929 -14.66812 -14.24426 -14.19723 -13.89327 -13.78901 -13.74953 -13.54830 -13.40591 -13.19760 -13.07909 -13.03036 -12.79599 -12.54804 -12.35203 -12.19814 -11.86903 -11.74857 -11.61302 -11.27156 -10.98970 -10.78664 -10.56474 -10.52073 -10.43467 -9.87374 -9.58910 -0.70333 -0.37171 1.04215 1.19487 1.40641 1.49489 1.52431 1.66106 1.88223 1.90753 1.95745 2.09160 2.55186 2.72834 2.84593 3.04324 3.28947 3.32033 3.54864 3.71379 3.78619 4.01474 4.05741 4.15927 4.28594 4.38854 4.41991 4.45106 4.53055 4.54905 4.63427 4.70580 4.75732 4.77884 4.82951 4.83251 4.86891 4.93935 4.98156 5.04119 5.25425 5.34272 5.36590 5.39781 5.49904 5.58227 5.74945 6.13252 6.59848 6.84657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.077 2.923 3 C -0.455 4.455 4 C -0.425 4.425 5 C -0.108 4.108 6 C -0.146 4.146 7 C 0.062 3.938 8 N -0.575 5.575 9 C 0.553 3.447 10 O -0.571 6.571 11 C -0.129 4.129 12 C -0.091 4.091 13 C 0.120 3.880 14 F -0.123 7.123 15 C -0.103 4.103 16 C -0.083 4.083 17 O -0.545 6.545 18 Si 0.977 3.023 19 H -0.245 1.245 20 H -0.264 1.264 21 H -0.247 1.247 22 C -0.129 4.129 23 C 0.122 3.878 24 F -0.135 7.135 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.176 0.824 41 H 0.134 0.866 42 H 0.392 0.608 43 H 0.167 0.833 44 H 0.084 0.916 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 5.168 4.353 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.267 2.733 3 C -0.564 4.564 4 C -0.510 4.510 5 C -0.145 4.145 6 C -0.184 4.184 7 C -0.059 4.059 8 N -0.305 5.305 9 C 0.340 3.660 10 O -0.451 6.451 11 C -0.133 4.133 12 C -0.109 4.109 13 C 0.100 3.900 14 F -0.101 7.101 15 C -0.104 4.104 16 C -0.193 4.193 17 O -0.352 6.352 18 Si 0.799 3.201 19 H -0.169 1.169 20 H -0.189 1.189 21 H -0.171 1.171 22 C -0.147 4.147 23 C 0.102 3.898 24 F -0.113 7.113 25 C -0.371 4.371 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.193 0.807 41 H 0.152 0.848 42 H 0.242 0.758 43 H 0.184 0.816 44 H 0.102 0.898 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.569 4.536 4.698 6.716 hybrid contribution -0.704 -0.631 -0.772 1.220 sum 0.866 3.905 3.926 5.605 Atomic orbital electron populations 1.26277 1.21347 1.04355 1.05235 0.78559 0.65673 0.66488 0.62593 1.26439 1.06854 1.17343 1.05743 1.26449 1.01655 1.06770 1.16138 1.20269 0.93091 1.02357 0.98756 1.20830 1.01870 1.00829 0.94869 1.22149 0.96943 0.95381 0.91473 1.47681 1.12867 1.17819 1.52137 1.18232 0.85977 0.82048 0.79700 1.90814 1.58992 1.56260 1.39012 1.19727 0.94492 0.95093 1.04013 1.21259 0.88929 1.01078 0.99678 1.17218 0.83426 0.89541 0.99804 1.91580 1.54451 1.72996 1.91075 1.20501 0.97449 0.93341 0.99138 1.25140 0.89173 1.09788 0.95181 1.86568 1.52576 1.57598 1.38462 0.85285 0.80586 0.76402 0.77870 1.16870 1.18883 1.17060 1.21064 0.89215 1.02082 1.02374 1.17666 0.84350 0.88452 0.99378 1.91552 1.55933 1.72836 1.90997 1.27757 0.84164 1.06841 1.18348 0.90180 0.90713 0.92010 0.89407 0.90309 0.89835 0.92671 0.89679 0.91932 0.89402 0.93637 0.89256 0.88245 0.85436 0.80656 0.84849 0.75846 0.81601 0.89771 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.83 8.65 113.37 0.98 2.82 16 2 Si 1.08 -7.20 10.34 68.60 0.71 -6.49 16 3 C -0.46 4.26 7.85 113.37 0.89 5.15 16 4 C -0.42 1.69 4.74 72.44 0.34 2.03 16 5 C -0.11 0.62 5.28 29.16 0.15 0.77 16 6 C -0.15 0.72 4.84 28.36 0.14 0.85 16 7 C 0.06 -0.34 4.92 86.37 0.43 0.09 16 8 N -0.57 -0.89 2.60 -633.17 -1.65 -2.54 16 9 C 0.55 4.70 6.54 86.74 0.57 5.27 16 10 O -0.57 -10.26 16.61 -3.94 -0.07 -10.33 16 11 C -0.13 -0.51 4.04 -20.05 -0.08 -0.60 16 12 C -0.09 0.11 7.99 22.57 0.18 0.29 16 13 C 0.12 -0.10 7.23 22.33 0.16 0.06 16 14 F -0.12 -0.12 16.73 44.97 0.75 0.63 16 15 C -0.10 0.19 5.27 -19.78 -0.10 0.08 16 16 C -0.08 0.30 2.44 71.23 0.17 0.48 16 17 O -0.54 0.83 12.88 -148.98 -1.92 -1.09 16 18 Si 0.98 -4.19 25.47 68.60 1.75 -2.44 16 19 H -0.24 1.13 6.73 99.48 0.67 1.80 16 20 H -0.26 0.22 7.11 99.48 0.71 0.93 16 21 H -0.25 0.89 7.11 99.48 0.71 1.60 16 22 C -0.13 0.07 8.62 22.28 0.19 0.27 16 23 C 0.12 0.57 7.28 22.67 0.16 0.74 16 24 F -0.13 -1.31 16.71 44.97 0.75 -0.56 16 25 C -0.21 -0.02 5.33 127.42 0.68 0.66 16 26 H 0.08 -0.40 7.96 -2.39 -0.02 -0.41 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H 0.09 -1.00 4.87 -2.38 -0.01 -1.01 16 30 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 31 H 0.08 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.05 0.02 7.91 -2.39 -0.02 0.00 16 33 H 0.08 -0.43 7.95 -2.39 -0.02 -0.45 16 34 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.09 -0.85 6.35 -2.39 -0.02 -0.86 16 36 H 0.04 -0.01 6.78 -2.39 -0.02 -0.02 16 37 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.10 -0.82 4.73 -2.38 -0.01 -0.83 16 39 H 0.13 -1.28 3.50 -2.39 -0.01 -1.28 16 40 H 0.18 -1.01 6.64 -2.91 -0.02 -1.03 16 41 H 0.13 -0.70 7.89 -2.39 -0.02 -0.71 16 42 H 0.39 -3.21 8.70 -74.06 -0.64 -3.85 16 43 H 0.17 -0.65 4.85 -2.91 -0.01 -0.66 16 44 H 0.08 -0.17 7.99 -2.39 -0.02 -0.19 16 45 H 0.07 0.38 7.26 -2.39 -0.02 0.36 16 Total: 0.00 -19.87 354.84 6.31 -13.56 By element: Atomic # 1 Polarization: -10.82 SS G_CDS: 1.12 Total: -9.70 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 4.86 Total: 18.95 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -1.65 Total: -2.54 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.98 Total: -11.41 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 1.50 Total: 0.07 kcal Atomic # 14 Polarization: -11.39 SS G_CDS: 2.46 Total: -8.93 kcal Total: -19.87 6.31 -13.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.404 kcal (2) G-P(sol) polarization free energy of solvation -19.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds