Wall clock time and date at job start Tue Mar 9 2021 13:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86299 * 109.15664 * 2 1 4 4 C 1.85254 * 109.30948 * 240.47852 * 2 1 3 5 5 C 1.54345 * 110.17149 * 321.44197 * 4 2 1 6 6 C 1.46871 * 111.75257 * 289.11203 * 5 4 2 7 7 C 1.51437 * 115.13407 * 66.38746 * 6 5 4 8 8 N 1.44763 * 109.29510 * 266.87467 * 7 6 5 9 9 C 1.34770 * 121.25261 * 283.27816 * 8 7 6 10 10 O 1.21564 * 120.00240 * 172.49540 * 9 8 7 11 11 C 1.47727 * 119.99930 * 352.49081 * 9 8 7 12 12 C 1.39638 * 120.11829 * 18.37763 * 11 9 8 13 13 C 1.37853 * 119.88103 * 180.29734 * 12 11 9 14 14 C 1.38640 * 120.11786 * 359.71515 * 13 12 11 15 15 F 1.35100 * 119.87947 * 179.97438 * 14 13 12 16 16 C 1.38674 * 120.23750 * 359.97438 * 14 13 12 17 17 C 1.50697 * 119.93924 * 180.02562 * 16 14 13 18 18 O 1.42900 * 109.47518 * 74.97309 * 17 16 14 19 19 Si 1.86297 * 109.46958 * 314.97398 * 17 16 14 20 20 H 1.48501 * 109.47054 * 60.00209 * 19 17 16 21 21 H 1.48504 * 109.47202 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47281 * 299.99810 * 19 17 16 23 23 C 1.37817 * 120.12083 * 0.02562 * 16 14 13 24 24 C 1.48294 * 117.49687 * 103.01498 * 8 7 6 25 25 H 1.09002 * 109.47112 * 291.39053 * 1 2 3 26 26 H 1.09001 * 109.46843 * 51.38271 * 1 2 3 27 27 H 1.08998 * 109.47427 * 171.38425 * 1 2 3 28 28 H 1.09003 * 109.46849 * 179.52378 * 3 2 1 29 29 H 1.09001 * 109.46944 * 299.51536 * 3 2 1 30 30 H 1.08991 * 109.46933 * 59.51675 * 3 2 1 31 31 H 1.09000 * 109.35250 * 81.66215 * 4 2 1 32 32 H 1.09004 * 109.35209 * 201.22789 * 4 2 1 33 33 H 1.08998 * 109.02616 * 49.70471 * 5 4 2 34 34 H 1.09003 * 109.02590 * 168.53214 * 5 4 2 35 35 H 1.08993 * 108.34313 * 187.94988 * 6 5 4 36 36 H 1.08996 * 108.34074 * 305.17784 * 6 5 4 37 37 H 1.09000 * 109.21949 * 147.03966 * 7 6 5 38 38 H 1.09008 * 109.57682 * 26.92917 * 7 6 5 39 39 H 1.07999 * 120.05873 * 0.02562 * 12 11 9 40 40 H 1.07995 * 119.94307 * 179.69468 * 13 12 11 41 41 H 1.09002 * 109.47222 * 194.97874 * 17 16 14 42 42 H 0.96701 * 114.00190 * 179.97438 * 18 17 16 43 43 H 1.07996 * 120.06207 * 179.97438 * 23 16 14 44 44 H 1.09001 * 109.64274 * 82.33593 * 24 8 7 45 45 H 1.08997 * 109.63718 * 202.75509 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4744 1.7598 0.0000 4 6 2.4756 -0.8615 -1.5213 5 6 1.5824 -2.0794 -1.8394 6 6 1.7733 -3.1632 -0.8668 7 6 1.3152 -2.8510 0.5424 8 7 2.4323 -2.3361 1.3055 9 6 3.3924 -3.1549 1.7790 10 8 4.3880 -2.6883 2.2975 11 6 3.2348 -4.6195 1.6679 12 6 2.3198 -5.1591 0.7615 13 6 2.1723 -6.5264 0.6663 14 6 2.9346 -7.3656 1.4643 15 9 2.7858 -8.7049 1.3674 16 6 3.8493 -6.8352 2.3615 17 6 4.6749 -7.7536 3.2252 18 8 5.7014 -8.3562 2.4345 19 14 3.5820 -9.0819 3.9408 20 1 2.9642 -9.8618 2.8384 21 1 4.3954 -9.9866 4.7924 22 1 2.5153 -8.4558 4.7625 23 6 4.0048 -5.4698 2.4648 24 6 2.4839 -0.8730 1.5417 25 1 -0.3633 0.3748 0.9569 26 1 -0.3633 0.6414 -0.8030 27 1 -0.3634 -1.0160 -0.1539 28 1 3.5643 1.7658 0.0085 29 1 2.1153 2.2692 -0.8943 30 1 2.1012 2.2740 0.8856 31 1 2.4543 -0.1683 -2.3623 32 1 3.4998 -1.1973 -1.3586 33 1 0.5380 -1.7678 -1.8239 34 1 1.8267 -2.4487 -2.8354 35 1 1.2303 -4.0400 -1.2194 36 1 2.8344 -3.4100 -0.8322 37 1 0.9440 -3.7632 1.0094 38 1 0.5202 -2.1058 0.5113 39 1 1.7256 -4.5063 0.1393 40 1 1.4614 -6.9446 -0.0309 41 1 5.1283 -7.1812 4.0344 42 1 6.2731 -8.9611 2.9268 43 1 4.7171 -5.0577 3.1641 44 1 1.8483 -0.6160 2.3892 45 1 3.5106 -0.5713 1.7489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:41 Heat of formation + Delta-G solvation = -59.083963 kcal Electronic energy + Delta-G solvation = -26735.151342 eV Core-core repulsion = 22986.273760 eV Total energy + Delta-G solvation = -3748.877582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.22463 -42.03101 -39.54411 -38.53357 -37.56642 -35.01976 -33.24609 -31.99545 -30.42649 -29.49458 -28.66581 -27.60181 -26.72133 -25.71742 -24.04494 -23.08838 -22.12946 -20.26906 -19.06879 -18.58904 -18.29132 -17.95914 -17.39823 -16.77815 -16.59227 -16.17710 -15.96298 -15.51512 -15.27115 -14.99096 -14.86406 -14.73505 -14.62825 -14.38875 -14.21984 -14.09064 -13.96172 -13.87973 -13.53373 -13.43444 -13.35591 -13.11081 -12.98253 -12.69797 -12.53761 -12.20293 -11.97778 -11.84883 -11.76867 -11.30215 -11.10542 -10.99394 -10.80042 -10.62374 -10.53818 -10.05326 -9.74258 -9.46872 -0.37949 0.03756 1.12413 1.42530 1.45653 1.52933 1.55399 1.64516 1.71891 1.96490 2.08680 2.38992 2.57123 3.09959 3.22938 3.41224 3.41614 3.61252 3.69401 3.79212 3.81139 4.04028 4.17932 4.20000 4.25746 4.27642 4.48740 4.52972 4.55906 4.58029 4.63235 4.64548 4.65468 4.69560 4.77052 4.80162 4.93119 4.94931 5.05495 5.06968 5.11429 5.13556 5.30047 5.33163 5.43190 5.48142 5.66405 6.32963 6.53055 7.17138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.013 2.987 3 C -0.449 4.449 4 C -0.412 4.412 5 C -0.105 4.105 6 C -0.162 4.162 7 C 0.057 3.943 8 N -0.586 5.586 9 C 0.561 3.439 10 O -0.531 6.531 11 C -0.146 4.146 12 C -0.116 4.116 13 C -0.161 4.161 14 C 0.130 3.870 15 F -0.120 7.120 16 C -0.122 4.122 17 C -0.080 4.080 18 O -0.541 6.541 19 Si 0.932 3.068 20 H -0.224 1.224 21 H -0.255 1.255 22 H -0.251 1.251 23 C -0.013 4.013 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.196 0.804 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.383 0.617 43 H 0.147 0.853 44 H 0.073 0.927 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 1.502 -1.551 4.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.207 2.793 3 C -0.557 4.557 4 C -0.499 4.499 5 C -0.142 4.142 6 C -0.200 4.200 7 C -0.066 4.066 8 N -0.318 5.318 9 C 0.351 3.649 10 O -0.409 6.409 11 C -0.149 4.149 12 C -0.133 4.133 13 C -0.180 4.180 14 C 0.110 3.890 15 F -0.098 7.098 16 C -0.123 4.123 17 C -0.190 4.190 18 O -0.348 6.348 19 Si 0.752 3.248 20 H -0.147 1.147 21 H -0.179 1.179 22 H -0.175 1.175 23 C -0.031 4.031 24 C -0.352 4.352 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.212 0.788 40 H 0.163 0.837 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.164 0.836 44 H 0.092 0.908 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.721 1.378 -1.363 5.104 hybrid contribution 0.668 -0.312 0.303 0.797 sum -4.054 1.066 -1.060 4.323 Atomic orbital electron populations 1.26496 1.20030 1.04683 1.05085 0.79461 0.67277 0.66831 0.65723 1.26085 1.06565 1.18259 1.04837 1.26266 1.04593 1.04056 1.14939 1.20223 1.00252 0.94693 0.99043 1.21038 1.03778 1.00120 0.95049 1.22080 0.90330 1.02840 0.91320 1.47405 1.23770 1.07046 1.53574 1.18143 0.82809 0.85870 0.78083 1.90788 1.28581 1.76997 1.44517 1.19927 1.00644 0.93344 1.00987 1.23575 0.96410 0.95876 0.97408 1.21211 1.01947 0.93529 1.01307 1.17975 0.96608 0.77687 0.96692 1.91584 1.94481 1.29350 1.94422 1.19229 0.98727 0.94413 0.99958 1.24631 0.95948 1.01960 0.96440 1.86520 1.45517 1.64073 1.38660 0.86208 0.79744 0.79369 0.79464 1.14668 1.17950 1.17475 1.20999 0.95293 0.90495 0.96363 1.27149 1.08524 0.84141 1.15397 0.90861 0.90572 0.90542 0.90942 0.90796 0.90924 0.90178 0.90467 0.91342 0.91274 0.89729 0.90434 0.88162 0.87633 0.78810 0.83655 0.90131 0.76969 0.83578 0.90827 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.73 7.85 101.05 0.79 2.52 16 2 Si 1.01 -3.57 10.33 -169.99 -1.76 -5.32 16 3 C -0.45 1.02 8.65 101.05 0.87 1.90 16 4 C -0.41 1.04 4.73 37.86 0.18 1.22 16 5 C -0.10 0.34 5.27 -28.96 -0.15 0.19 16 6 C -0.16 0.52 3.48 -30.46 -0.11 0.42 16 7 C 0.06 -0.16 4.74 -5.76 -0.03 -0.19 16 8 N -0.59 -0.07 2.62 -119.93 -0.31 -0.38 16 9 C 0.56 1.79 7.11 -12.39 -0.09 1.71 16 10 O -0.53 -3.63 16.10 5.31 0.09 -3.54 16 11 C -0.15 -0.29 5.76 -104.96 -0.60 -0.89 16 12 C -0.12 0.05 6.88 -39.20 -0.27 -0.22 16 13 C -0.16 0.00 10.01 -39.57 -0.40 -0.40 16 14 C 0.13 0.29 6.67 -39.27 -0.26 0.03 16 15 F -0.12 -0.38 12.82 2.25 0.03 -0.35 16 16 C -0.12 -0.28 4.80 -104.62 -0.50 -0.79 16 17 C -0.08 -0.07 2.79 36.00 0.10 0.03 16 18 O -0.54 -0.78 12.86 -35.23 -0.45 -1.24 16 19 Si 0.93 0.71 26.09 -169.99 -4.43 -3.73 16 20 H -0.22 -0.50 5.28 56.52 0.30 -0.20 16 21 H -0.26 -0.16 7.11 56.52 0.40 0.24 16 22 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 23 C -0.01 -0.03 9.20 -39.20 -0.36 -0.39 16 24 C -0.18 0.14 5.39 60.83 0.33 0.47 16 25 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 26 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 27 H 0.08 -0.35 4.87 -51.93 -0.25 -0.60 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.08 -0.22 7.95 -51.93 -0.41 -0.64 16 32 H 0.08 -0.08 7.91 -51.93 -0.41 -0.49 16 33 H 0.07 -0.30 6.38 -51.93 -0.33 -0.63 16 34 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 35 H 0.08 -0.43 7.18 -51.93 -0.37 -0.81 16 36 H 0.08 -0.11 6.63 -51.93 -0.34 -0.46 16 37 H 0.10 -0.37 5.28 -51.93 -0.27 -0.64 16 38 H 0.11 -0.48 3.48 -51.92 -0.18 -0.66 16 39 H 0.20 -0.59 1.10 -87.83 -0.10 -0.68 16 40 H 0.15 -0.35 8.06 -52.49 -0.42 -0.78 16 41 H 0.08 -0.09 7.77 -51.93 -0.40 -0.49 16 42 H 0.38 -1.18 8.74 45.56 0.40 -0.78 16 43 H 0.15 0.31 7.69 -52.49 -0.40 -0.09 16 44 H 0.07 -0.11 7.98 -51.93 -0.41 -0.53 16 45 H 0.10 0.10 7.14 -51.93 -0.37 -0.28 16 LS Contribution 339.77 15.07 5.12 5.12 Total: 0.00 -8.15 339.77 -7.90 -16.05 By element: Atomic # 1 Polarization: -6.52 SS G_CDS: -5.68 Total: -12.21 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.49 Total: 5.60 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -0.31 Total: -0.38 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.37 Total: -4.78 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.03 Total: -0.35 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: -6.19 Total: -9.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -8.15 -7.90 -16.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.035 kcal (2) G-P(sol) polarization free energy of solvation -8.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds