Wall clock time and date at job start Tue Mar 9 2021 13:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 O 1.42904 * 109.47288 * 180.02562 * 11 9 8 13 13 C 1.35897 * 116.99846 * 179.97438 * 12 11 9 14 14 C 1.38732 * 120.05775 * 359.72509 * 13 12 11 15 15 C 1.38147 * 119.94074 * 179.74355 * 14 13 12 16 16 C 1.38265 * 120.06008 * 0.51183 * 15 14 13 17 17 C 1.50696 * 119.94702 * 179.74667 * 16 15 14 18 18 O 1.42903 * 109.46837 * 245.01947 * 17 16 15 19 19 Si 1.86306 * 109.47125 * 5.01520 * 17 16 15 20 20 H 1.48496 * 109.46963 * 60.00039 * 19 17 16 21 21 H 1.48497 * 109.46842 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46885 * 300.00066 * 19 17 16 23 23 C 1.38264 * 120.10614 * 359.75857 * 16 15 14 24 24 C 1.38144 * 120.05894 * 359.97438 * 23 16 15 25 25 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 26 26 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 27 27 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 28 28 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 29 29 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 30 30 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 31 31 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 32 32 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 33 33 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 34 34 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 35 35 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 36 36 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 37 37 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 38 38 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 39 39 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 40 40 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 41 41 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 42 42 H 1.07994 * 120.02756 * 359.97438 * 14 13 12 43 43 H 1.08001 * 119.97177 * 180.22509 * 15 14 13 44 44 H 1.08993 * 109.47459 * 125.01592 * 17 16 15 45 45 H 0.96699 * 113.99650 * 180.02562 * 18 17 16 46 46 H 1.08004 * 119.97255 * 179.97438 * 23 16 15 47 47 H 1.07999 * 120.02766 * 179.97438 * 24 23 16 48 48 H 1.09000 * 109.63462 * 202.69778 * 25 8 7 49 49 H 1.08995 * 109.64291 * 82.07444 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 8 6.0120 -4.1656 -2.1202 13 6 7.2606 -4.6837 -1.9811 14 6 8.2329 -3.9770 -1.2884 15 6 9.4999 -4.5083 -1.1439 16 6 9.8024 -5.7385 -1.6980 17 6 11.1869 -6.3131 -1.5437 18 8 11.8108 -6.4034 -2.8262 19 14 12.1987 -5.2068 -0.4376 20 1 11.5505 -5.1128 0.8951 21 1 13.5632 -5.7727 -0.2861 22 1 12.2890 -3.8528 -1.0408 23 6 8.8367 -6.4421 -2.3936 24 6 7.5666 -5.9177 -2.5362 25 6 2.4839 -0.8729 -1.5417 26 1 -0.3633 0.5214 0.8857 27 1 -0.3633 0.5064 -0.8942 28 1 -0.3634 -1.0276 0.0087 29 1 3.5499 1.7709 0.1759 30 1 2.2592 2.2192 -0.9648 31 1 1.9713 2.3192 0.7889 32 1 2.4568 -1.9390 1.3586 33 1 1.8275 -0.6114 2.3613 34 1 4.1880 -0.7692 2.8354 35 1 3.9678 0.6715 1.8238 36 1 5.8869 -0.7284 1.2192 37 1 4.7652 -2.0367 0.8320 38 1 4.2908 0.5826 -0.5119 39 1 5.7174 -0.3573 -1.0178 40 1 6.4424 -2.1518 -1.9556 41 1 5.9408 -2.9539 -0.4479 42 1 7.9985 -3.0141 -0.8593 43 1 10.2562 -3.9603 -0.6016 44 1 11.1207 -7.3069 -1.1010 45 1 12.7068 -6.7662 -2.8030 46 1 9.0754 -7.4027 -2.8258 47 1 6.8128 -6.4676 -3.0800 48 1 1.8612 -1.7441 -1.7452 49 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:20 Heat of formation + Delta-G solvation = -103.254187 kcal Electronic energy + Delta-G solvation = -27476.583013 eV Core-core repulsion = 23721.024231 eV Total energy + Delta-G solvation = -3755.558782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60004 -40.69944 -38.97248 -38.08103 -37.17376 -34.99875 -32.45196 -31.78735 -30.69237 -29.74154 -29.43811 -28.53163 -26.88852 -26.05128 -25.42328 -23.83912 -22.22695 -21.80774 -20.28731 -19.47237 -18.49429 -18.10495 -17.63737 -17.33399 -16.83603 -16.71366 -16.39506 -15.81771 -15.65573 -15.45909 -15.41540 -14.94011 -14.51418 -14.42008 -14.39326 -14.28888 -14.10640 -13.98254 -13.95706 -13.65171 -13.55962 -13.44031 -13.32320 -13.25709 -13.01151 -12.66941 -12.45923 -12.23086 -12.11718 -11.93306 -11.83389 -11.71952 -11.61615 -11.27924 -11.00483 -10.73345 -10.61528 -10.33111 -9.97597 -9.53771 -9.14123 0.34554 0.36486 1.12996 1.26802 1.40868 1.46686 1.47063 1.59023 1.64847 1.80231 1.87492 2.37718 2.49213 2.68169 3.33196 3.44802 3.51397 3.70599 3.75865 3.83008 3.84166 3.89191 3.97973 3.99314 4.21713 4.29346 4.29519 4.39266 4.47552 4.51316 4.52761 4.56981 4.59544 4.63641 4.64068 4.69112 4.75163 4.79331 4.91797 4.99939 5.04202 5.13470 5.21042 5.28410 5.29320 5.31075 5.42176 5.46221 5.57041 5.73580 6.22037 6.38607 6.58737 7.13514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.014 2.986 3 C -0.456 4.456 4 C -0.412 4.412 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.076 3.924 8 N -0.591 5.591 9 C 0.516 3.484 10 O -0.513 6.513 11 C 0.039 3.961 12 O -0.289 6.289 13 C 0.134 3.866 14 C -0.206 4.206 15 C -0.082 4.082 16 C -0.113 4.113 17 C -0.077 4.077 18 O -0.545 6.545 19 Si 0.945 3.055 20 H -0.250 1.250 21 H -0.257 1.257 22 H -0.249 1.249 23 C -0.047 4.047 24 C -0.146 4.146 25 C -0.183 4.183 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.379 0.621 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.096 0.904 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 3.871 4.634 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.208 2.792 3 C -0.563 4.563 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.190 4.190 7 C -0.047 4.047 8 N -0.326 5.326 9 C 0.303 3.697 10 O -0.388 6.388 11 C -0.039 4.039 12 O -0.201 6.201 13 C 0.089 3.911 14 C -0.224 4.224 15 C -0.099 4.099 16 C -0.114 4.114 17 C -0.187 4.187 18 O -0.351 6.351 19 Si 0.768 3.232 20 H -0.174 1.174 21 H -0.181 1.181 22 H -0.172 1.172 23 C -0.065 4.065 24 C -0.164 4.164 25 C -0.350 4.350 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.093 0.907 45 H 0.227 0.773 46 H 0.153 0.847 47 H 0.154 0.846 48 H 0.115 0.885 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.637 4.133 4.503 6.328 hybrid contribution 0.444 -0.307 0.016 0.540 sum 2.081 3.826 4.519 6.276 Atomic orbital electron populations 1.26089 1.19914 1.04895 1.04863 0.79458 0.67402 0.66717 0.65637 1.26495 1.06036 1.18679 1.05076 1.26262 1.00749 1.07865 1.14949 1.20209 0.93777 1.01184 0.99101 1.20931 1.00959 1.02114 0.94963 1.21713 0.96133 0.95401 0.91447 1.47576 1.12186 1.18567 1.54280 1.19974 0.88513 0.81567 0.79654 1.90759 1.57826 1.51549 1.38628 1.22647 0.95693 0.85829 0.99776 1.86170 1.27818 1.33507 1.72609 1.19071 0.83435 0.93368 0.95267 1.21112 0.94133 1.01711 1.05467 1.20757 0.96255 0.94373 0.98551 1.19160 0.94412 0.95595 1.02192 1.24658 0.95686 1.05846 0.92536 1.86522 1.33320 1.87565 1.27675 0.85780 0.78930 0.80085 0.78431 1.17368 1.18109 1.17214 1.20829 0.90995 0.99550 0.95171 1.20522 0.97831 0.94463 1.03606 1.27161 0.84955 1.07402 1.15456 0.90776 0.90901 0.90943 0.90569 0.90862 0.90576 0.90550 0.90220 0.91493 0.91451 0.90654 0.91385 0.87565 0.90066 0.88920 0.88686 0.85147 0.85933 0.90659 0.77339 0.84710 0.84552 0.88534 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.97 8.65 101.05 0.87 1.85 16 2 Si 1.01 -3.47 10.32 -169.99 -1.75 -5.23 16 3 C -0.46 1.66 7.85 101.05 0.79 2.45 16 4 C -0.41 1.04 4.74 37.86 0.18 1.21 16 5 C -0.11 0.33 5.27 -28.96 -0.15 0.18 16 6 C -0.15 0.52 4.63 -30.18 -0.14 0.38 16 7 C 0.08 -0.24 5.02 -5.37 -0.03 -0.27 16 8 N -0.59 0.04 2.61 -112.85 -0.29 -0.25 16 9 C 0.52 1.59 7.36 -10.99 -0.08 1.51 16 10 O -0.51 -4.04 16.13 -14.35 -0.23 -4.27 16 11 C 0.04 0.03 3.90 36.01 0.14 0.17 16 12 O -0.29 -1.20 9.67 -39.33 -0.38 -1.59 16 13 C 0.13 0.40 6.69 -39.22 -0.26 0.14 16 14 C -0.21 -0.25 9.04 -39.43 -0.36 -0.61 16 15 C -0.08 -0.11 8.66 -39.60 -0.34 -0.46 16 16 C -0.11 -0.20 5.38 -104.60 -0.56 -0.77 16 17 C -0.08 0.01 2.79 36.00 0.10 0.11 16 18 O -0.54 -0.23 12.81 -35.23 -0.45 -0.68 16 19 Si 0.94 -0.62 25.14 -169.99 -4.27 -4.89 16 20 H -0.25 0.05 7.11 56.52 0.40 0.45 16 21 H -0.26 0.13 7.11 56.52 0.40 0.53 16 22 H -0.25 -0.15 7.04 56.52 0.40 0.25 16 23 C -0.05 -0.09 9.68 -39.61 -0.38 -0.48 16 24 C -0.15 -0.41 9.99 -39.43 -0.39 -0.80 16 25 C -0.18 0.11 5.35 60.84 0.33 0.43 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.08 -0.33 4.86 -51.93 -0.25 -0.58 16 30 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 32 H 0.08 -0.09 7.91 -51.92 -0.41 -0.50 16 33 H 0.08 -0.22 7.95 -51.93 -0.41 -0.63 16 34 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.07 -0.28 6.34 -51.93 -0.33 -0.61 16 36 H 0.07 -0.36 8.14 -51.93 -0.42 -0.78 16 37 H 0.07 -0.15 6.19 -51.93 -0.32 -0.47 16 38 H 0.11 -0.47 3.48 -51.93 -0.18 -0.65 16 39 H 0.08 -0.38 7.14 -51.93 -0.37 -0.75 16 40 H 0.09 -0.15 7.08 -51.93 -0.37 -0.52 16 41 H 0.10 -0.16 5.91 -51.93 -0.31 -0.46 16 42 H 0.13 -0.21 6.30 -52.49 -0.33 -0.54 16 43 H 0.12 -0.03 4.86 -52.49 -0.25 -0.28 16 44 H 0.08 -0.14 7.96 -51.93 -0.41 -0.56 16 45 H 0.38 -1.52 8.74 45.56 0.40 -1.12 16 46 H 0.14 0.06 8.06 -52.48 -0.42 -0.36 16 47 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 48 H 0.10 0.12 7.21 -51.93 -0.37 -0.25 16 49 H 0.07 -0.08 7.98 -51.93 -0.41 -0.50 16 LS Contribution 375.04 15.07 5.65 5.65 Total: 0.00 -9.39 375.04 -8.92 -18.31 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: -6.90 Total: -12.12 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.29 Total: 5.06 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -0.29 Total: -0.25 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -1.06 Total: -6.54 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: -6.03 Total: -10.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -9.39 -8.92 -18.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.944 kcal (2) G-P(sol) polarization free energy of solvation -9.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds