Wall clock time and date at job start Tue Mar 9 2021 13:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 O 1.42904 * 109.47288 * 180.02562 * 11 9 8 13 13 C 1.35897 * 116.99846 * 179.97438 * 12 11 9 14 14 C 1.38732 * 120.05775 * 359.72509 * 13 12 11 15 15 C 1.38147 * 119.94074 * 179.74355 * 14 13 12 16 16 C 1.38265 * 120.06008 * 0.51183 * 15 14 13 17 17 C 1.50696 * 119.94702 * 179.74667 * 16 15 14 18 18 O 1.42903 * 109.46837 * 245.01947 * 17 16 15 19 19 Si 1.86306 * 109.47125 * 5.01520 * 17 16 15 20 20 H 1.48496 * 109.46963 * 60.00039 * 19 17 16 21 21 H 1.48497 * 109.46842 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46885 * 300.00066 * 19 17 16 23 23 C 1.38264 * 120.10614 * 359.75857 * 16 15 14 24 24 C 1.38144 * 120.05894 * 359.97438 * 23 16 15 25 25 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 26 26 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 27 27 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 28 28 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 29 29 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 30 30 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 31 31 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 32 32 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 33 33 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 34 34 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 35 35 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 36 36 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 37 37 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 38 38 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 39 39 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 40 40 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 41 41 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 42 42 H 1.07994 * 120.02756 * 359.97438 * 14 13 12 43 43 H 1.08001 * 119.97177 * 180.22509 * 15 14 13 44 44 H 1.08993 * 109.47459 * 125.01592 * 17 16 15 45 45 H 0.96699 * 113.99650 * 180.02562 * 18 17 16 46 46 H 1.08004 * 119.97255 * 179.97438 * 23 16 15 47 47 H 1.07999 * 120.02766 * 179.97438 * 24 23 16 48 48 H 1.09000 * 109.63462 * 202.69778 * 25 8 7 49 49 H 1.08995 * 109.64291 * 82.07444 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 8 6.0120 -4.1656 -2.1202 13 6 7.2606 -4.6837 -1.9811 14 6 8.2329 -3.9770 -1.2884 15 6 9.4999 -4.5083 -1.1439 16 6 9.8024 -5.7385 -1.6980 17 6 11.1869 -6.3131 -1.5437 18 8 11.8108 -6.4034 -2.8262 19 14 12.1987 -5.2068 -0.4376 20 1 11.5505 -5.1128 0.8951 21 1 13.5632 -5.7727 -0.2861 22 1 12.2890 -3.8528 -1.0408 23 6 8.8367 -6.4421 -2.3936 24 6 7.5666 -5.9177 -2.5362 25 6 2.4839 -0.8729 -1.5417 26 1 -0.3633 0.5214 0.8857 27 1 -0.3633 0.5064 -0.8942 28 1 -0.3634 -1.0276 0.0087 29 1 3.5499 1.7709 0.1759 30 1 2.2592 2.2192 -0.9648 31 1 1.9713 2.3192 0.7889 32 1 2.4568 -1.9390 1.3586 33 1 1.8275 -0.6114 2.3613 34 1 4.1880 -0.7692 2.8354 35 1 3.9678 0.6715 1.8238 36 1 5.8869 -0.7284 1.2192 37 1 4.7652 -2.0367 0.8320 38 1 4.2908 0.5826 -0.5119 39 1 5.7174 -0.3573 -1.0178 40 1 6.4424 -2.1518 -1.9556 41 1 5.9408 -2.9539 -0.4479 42 1 7.9985 -3.0141 -0.8593 43 1 10.2562 -3.9603 -0.6016 44 1 11.1207 -7.3069 -1.1010 45 1 12.7068 -6.7662 -2.8030 46 1 9.0754 -7.4027 -2.8258 47 1 6.8128 -6.4676 -3.0800 48 1 1.8612 -1.7441 -1.7452 49 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:19 Heat of formation + Delta-G solvation = -99.395139 kcal Electronic energy + Delta-G solvation = -27476.415672 eV Core-core repulsion = 23721.024231 eV Total energy + Delta-G solvation = -3755.391441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70692 -40.77892 -39.02241 -38.10738 -37.18601 -34.92238 -32.53111 -31.85526 -30.66252 -29.65353 -29.18851 -28.31597 -26.86937 -26.03328 -25.29265 -23.91356 -22.25924 -21.64178 -20.31414 -19.55178 -18.45217 -18.14476 -17.68553 -17.41685 -16.84959 -16.69484 -16.34194 -15.80548 -15.67424 -15.45601 -15.33372 -14.86291 -14.48174 -14.45139 -14.31274 -14.26759 -14.03387 -13.82391 -13.74263 -13.60873 -13.42843 -13.35177 -13.27256 -13.18065 -12.78934 -12.52334 -12.46391 -12.24681 -12.09739 -11.84449 -11.70103 -11.68077 -11.42580 -11.18679 -10.86175 -10.77434 -10.41406 -10.27214 -10.07420 -9.55101 -9.25294 0.23195 0.27337 1.19735 1.28921 1.39337 1.48827 1.54150 1.67581 1.92844 1.92926 1.93790 2.48392 2.56976 2.59685 3.31406 3.51835 3.67784 3.78509 3.83103 3.90414 3.91969 4.01238 4.09909 4.15847 4.25427 4.38217 4.44520 4.47002 4.50175 4.57912 4.66383 4.75295 4.77318 4.84237 4.85767 4.89046 4.92716 4.95032 5.01103 5.08836 5.12933 5.20521 5.30335 5.39980 5.43508 5.47437 5.51416 5.58418 5.66319 5.76117 6.16657 6.32481 6.84991 7.00615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.083 2.917 3 C -0.456 4.456 4 C -0.424 4.424 5 C -0.109 4.109 6 C -0.152 4.152 7 C 0.065 3.935 8 N -0.582 5.582 9 C 0.506 3.494 10 O -0.579 6.579 11 C 0.037 3.963 12 O -0.320 6.320 13 C 0.117 3.883 14 C -0.201 4.201 15 C -0.090 4.090 16 C -0.125 4.125 17 C -0.082 4.082 18 O -0.565 6.565 19 Si 0.980 3.020 20 H -0.255 1.255 21 H -0.258 1.258 22 H -0.266 1.266 23 C -0.056 4.056 24 C -0.165 4.165 25 C -0.208 4.208 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.161 0.839 43 H 0.139 0.861 44 H 0.092 0.908 45 H 0.397 0.603 46 H 0.143 0.857 47 H 0.130 0.870 48 H 0.067 0.933 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 5.934 6.157 9.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.272 2.728 3 C -0.564 4.564 4 C -0.509 4.509 5 C -0.146 4.146 6 C -0.190 4.190 7 C -0.057 4.057 8 N -0.315 5.315 9 C 0.294 3.706 10 O -0.459 6.459 11 C -0.040 4.040 12 O -0.233 6.233 13 C 0.072 3.928 14 C -0.220 4.220 15 C -0.108 4.108 16 C -0.125 4.125 17 C -0.191 4.191 18 O -0.374 6.374 19 Si 0.804 3.196 20 H -0.179 1.179 21 H -0.182 1.182 22 H -0.191 1.191 23 C -0.074 4.074 24 C -0.184 4.184 25 C -0.372 4.372 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.178 0.822 43 H 0.157 0.843 44 H 0.110 0.890 45 H 0.247 0.753 46 H 0.161 0.839 47 H 0.148 0.852 48 H 0.085 0.915 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.487 6.193 6.034 9.323 hybrid contribution -0.159 -0.951 -0.468 1.072 sum 3.329 5.242 5.566 8.339 Atomic orbital electron populations 1.26330 1.21850 1.04252 1.05106 0.78445 0.65334 0.66372 0.62644 1.26457 1.06982 1.17434 1.05553 1.26422 1.01917 1.06817 1.15788 1.20277 0.92992 1.02347 0.99009 1.20941 1.02300 1.01127 0.94623 1.22094 0.96854 0.95337 0.91388 1.47723 1.12660 1.17980 1.53123 1.20545 0.89206 0.81918 0.78958 1.90719 1.59554 1.53713 1.41890 1.22877 0.94503 0.85330 1.01327 1.86130 1.28621 1.35101 1.73464 1.19239 0.83590 0.93759 0.96221 1.21415 0.93485 1.02584 1.04496 1.21047 0.96746 0.94420 0.98579 1.19519 0.95353 0.95881 1.01788 1.24784 0.94759 1.07054 0.92534 1.86471 1.34850 1.87933 1.28133 0.85276 0.78353 0.78561 0.77424 1.17853 1.18219 1.19080 1.20974 0.90793 1.00085 0.95522 1.20670 0.98315 0.95073 1.04303 1.27682 0.84734 1.06572 1.18219 0.90210 0.90936 0.92103 0.89203 0.90587 0.89928 0.92478 0.89864 0.91790 0.89582 0.88204 0.92868 0.85877 0.87742 0.86115 0.86115 0.82177 0.84319 0.88971 0.75271 0.83890 0.85165 0.91460 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.63 8.65 113.37 0.98 2.62 16 2 Si 1.08 -7.47 10.32 68.60 0.71 -6.76 16 3 C -0.46 4.33 7.85 113.37 0.89 5.22 16 4 C -0.42 2.14 4.74 72.44 0.34 2.49 16 5 C -0.11 0.85 5.27 29.15 0.15 1.00 16 6 C -0.15 1.30 4.63 28.36 0.13 1.43 16 7 C 0.06 -0.52 5.02 86.33 0.43 -0.09 16 8 N -0.58 -0.29 2.61 -629.34 -1.64 -1.93 16 9 C 0.51 4.02 7.36 87.66 0.65 4.67 16 10 O -0.58 -11.31 16.13 16.01 0.26 -11.05 16 11 C 0.04 0.07 3.90 71.24 0.28 0.35 16 12 O -0.32 -3.23 9.67 -73.35 -0.71 -3.94 16 13 C 0.12 0.83 6.69 22.51 0.15 0.98 16 14 C -0.20 -0.36 9.04 22.37 0.20 -0.16 16 15 C -0.09 -0.19 8.66 22.25 0.19 0.00 16 16 C -0.13 -0.45 5.38 -19.85 -0.11 -0.55 16 17 C -0.08 0.08 2.79 71.23 0.20 0.28 16 18 O -0.56 -0.23 12.81 -148.98 -1.91 -2.14 16 19 Si 0.98 -2.32 25.14 68.60 1.72 -0.60 16 20 H -0.25 0.44 7.11 99.48 0.71 1.15 16 21 H -0.26 0.60 7.11 99.48 0.71 1.30 16 22 H -0.27 -0.11 7.04 99.48 0.70 0.59 16 23 C -0.06 -0.28 9.68 22.25 0.22 -0.06 16 24 C -0.16 -1.25 9.99 22.37 0.22 -1.02 16 25 C -0.21 -0.09 5.35 127.42 0.68 0.59 16 26 H 0.08 -0.37 7.96 -2.38 -0.02 -0.38 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.09 -1.07 4.86 -2.39 -0.01 -1.09 16 30 H 0.07 -0.69 7.96 -2.39 -0.02 -0.71 16 31 H 0.08 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.06 -0.05 7.91 -2.38 -0.02 -0.07 16 33 H 0.08 -0.48 7.95 -2.39 -0.02 -0.49 16 34 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.09 -0.97 6.34 -2.39 -0.02 -0.98 16 36 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 37 H 0.05 -0.26 6.19 -2.39 -0.01 -0.28 16 38 H 0.12 -1.41 3.48 -2.39 -0.01 -1.42 16 39 H 0.10 -1.28 7.14 -2.39 -0.02 -1.29 16 40 H 0.12 -0.55 7.08 -2.39 -0.02 -0.56 16 41 H 0.12 -0.49 5.91 -2.39 -0.01 -0.50 16 42 H 0.16 -0.87 6.30 -2.91 -0.02 -0.89 16 43 H 0.14 -0.25 4.86 -2.91 -0.01 -0.26 16 44 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 45 H 0.40 -3.46 8.74 -74.06 -0.65 -4.10 16 46 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 47 H 0.13 0.96 8.06 -2.91 -0.02 0.93 16 48 H 0.07 0.43 7.21 -2.39 -0.02 0.41 16 49 H 0.08 -0.07 7.98 -2.39 -0.02 -0.09 16 Total: 0.00 -25.65 375.04 5.11 -20.55 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 1.06 Total: -11.87 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.61 Total: 17.74 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -1.64 Total: -1.93 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -2.36 Total: -17.13 kcal Atomic # 14 Polarization: -9.79 SS G_CDS: 2.43 Total: -7.35 kcal Total: -25.65 5.11 -20.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.849 kcal (2) G-P(sol) polarization free energy of solvation -25.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds