Wall clock time and date at job start Tue Mar 9 2021 13:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47184 * 180.02562 * 11 9 8 13 13 O 1.42904 * 109.46984 * 180.02562 * 12 11 9 14 14 C 1.35897 * 116.99599 * 179.97438 * 13 12 11 15 15 C 1.38707 * 120.06229 * 359.72473 * 14 13 12 16 16 C 1.38170 * 119.94919 * 179.72260 * 15 14 13 17 17 C 1.38239 * 120.05032 * 0.57153 * 16 15 14 18 18 C 1.38291 * 120.11682 * 359.67979 * 17 16 15 19 19 C 1.50692 * 119.97514 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47322 * 245.02200 * 19 18 17 21 21 Si 1.86299 * 109.47275 * 5.02149 * 19 18 17 22 22 H 1.48499 * 109.46983 * 300.00051 * 21 19 18 23 23 H 1.48497 * 109.47152 * 60.00111 * 21 19 18 24 24 H 1.48506 * 109.47445 * 180.02562 * 21 19 18 25 25 C 1.38126 * 120.04998 * 0.04426 * 18 17 16 26 26 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 27 27 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 28 28 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 30 30 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 31 31 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 32 32 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 33 33 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 34 34 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 35 35 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 36 36 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 37 37 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 38 38 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 39 39 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 40 40 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 41 41 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 42 42 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 43 43 H 1.08996 * 109.46864 * 299.99496 * 12 11 9 44 44 H 1.08994 * 109.47471 * 59.99991 * 12 11 9 45 45 H 1.08000 * 120.02330 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.97483 * 180.27558 * 16 15 14 47 47 H 1.08004 * 119.94380 * 179.69968 * 17 16 15 48 48 H 1.09002 * 109.47397 * 125.02654 * 19 18 17 49 49 H 0.96694 * 114.00368 * 179.97438 * 20 19 18 50 50 H 1.08002 * 120.02340 * 179.97438 * 25 18 17 51 51 H 1.09000 * 109.63462 * 202.69778 * 26 8 7 52 52 H 1.08995 * 109.64291 * 82.07444 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 6 6.0292 -4.2557 -2.1624 13 8 7.3823 -4.6452 -1.9187 14 6 7.7799 -5.8427 -2.4234 15 6 6.8848 -6.6292 -3.1335 16 6 7.2932 -7.8437 -3.6506 17 6 8.5894 -8.2805 -3.4505 18 6 9.4824 -7.5008 -2.7385 19 6 10.8948 -7.9798 -2.5229 20 8 11.1133 -8.2067 -1.1290 21 14 11.1618 -9.5678 -3.4598 22 1 10.2098 -10.5972 -2.9707 23 1 10.9348 -9.3321 -4.9083 24 1 12.5535 -10.0402 -3.2469 25 6 9.0806 -6.2833 -2.2245 26 6 2.4839 -0.8729 -1.5417 27 1 -0.3633 0.5214 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 -0.3634 -1.0276 0.0087 30 1 3.5499 1.7709 0.1759 31 1 2.2592 2.2192 -0.9648 32 1 1.9713 2.3192 0.7889 33 1 2.4568 -1.9390 1.3586 34 1 1.8275 -0.6114 2.3613 35 1 4.1880 -0.7692 2.8354 36 1 3.9678 0.6715 1.8238 37 1 5.8869 -0.7284 1.2192 38 1 4.7652 -2.0367 0.8320 39 1 4.2908 0.5826 -0.5119 40 1 5.7174 -0.3573 -1.0178 41 1 6.4424 -2.1518 -1.9556 42 1 5.9408 -2.9539 -0.4479 43 1 5.3552 -4.9947 -1.7295 44 1 5.8569 -4.1920 -3.2368 45 1 5.8706 -6.2906 -3.2856 46 1 6.5978 -8.4543 -4.2073 47 1 8.9054 -9.2324 -3.8513 48 1 11.5936 -7.2242 -2.8818 49 1 12.0037 -8.5178 -0.9160 50 1 9.7782 -5.6748 -1.6682 51 1 1.8612 -1.7441 -1.7452 52 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:46 Heat of formation + Delta-G solvation = -113.007496 kcal Electronic energy + Delta-G solvation = -28992.045938 eV Core-core repulsion = 25080.526602 eV Total energy + Delta-G solvation = -3911.519336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38089 -40.88407 -38.98939 -38.14030 -37.27331 -34.96718 -33.34220 -32.48639 -30.87235 -30.06357 -29.45095 -28.56559 -27.67772 -26.78184 -25.68657 -24.40671 -23.55647 -21.96389 -21.56873 -20.12260 -18.96602 -18.46544 -17.98692 -17.43957 -17.39127 -17.10552 -16.86406 -16.49052 -15.79337 -15.71961 -15.56073 -15.43092 -14.87636 -14.76046 -14.57336 -14.40876 -14.27106 -14.12914 -14.00975 -13.94560 -13.74174 -13.62353 -13.42681 -13.40628 -13.33636 -12.99159 -12.86335 -12.81883 -12.61865 -12.31552 -12.04700 -11.88276 -11.83314 -11.78485 -11.56629 -11.56381 -11.26073 -10.98490 -10.77206 -10.59700 -10.36533 -9.78481 -9.49560 -9.11947 0.32829 0.52926 1.14807 1.38401 1.45933 1.52539 1.54220 1.63074 1.68512 1.89223 1.94404 2.39659 2.43460 2.75230 3.43868 3.50532 3.61406 3.75365 3.81373 3.88965 3.93870 3.97247 3.98376 4.14368 4.26311 4.28360 4.30573 4.34902 4.37951 4.50041 4.53578 4.54996 4.58991 4.62127 4.64262 4.66968 4.68792 4.69548 4.79488 4.80902 4.87313 4.94241 5.08788 5.09412 5.20257 5.31318 5.33328 5.37365 5.43056 5.49187 5.50682 5.57134 5.78817 6.32998 6.48155 6.59181 7.15062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.013 2.987 3 C -0.456 4.456 4 C -0.411 4.411 5 C -0.106 4.106 6 C -0.149 4.149 7 C 0.079 3.921 8 N -0.591 5.591 9 C 0.520 3.480 10 O -0.540 6.540 11 C -0.142 4.142 12 C 0.074 3.926 13 O -0.316 6.316 14 C 0.133 3.867 15 C -0.203 4.203 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.038 4.038 19 C -0.083 4.083 20 O -0.543 6.543 21 Si 0.950 3.050 22 H -0.248 1.248 23 H -0.249 1.249 24 H -0.257 1.257 25 C -0.122 4.122 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.122 0.878 48 H 0.078 0.922 49 H 0.380 0.620 50 H 0.134 0.866 51 H 0.095 0.905 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 3.933 1.679 4.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.207 2.793 3 C -0.563 4.563 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.188 4.188 7 C -0.044 4.044 8 N -0.324 5.324 9 C 0.308 3.692 10 O -0.417 6.417 11 C -0.182 4.182 12 C -0.002 4.002 13 O -0.230 6.230 14 C 0.087 3.913 15 C -0.221 4.221 16 C -0.090 4.090 17 C -0.179 4.179 18 C -0.039 4.039 19 C -0.193 4.193 20 O -0.349 6.349 21 Si 0.773 3.227 22 H -0.171 1.171 23 H -0.173 1.173 24 H -0.182 1.182 25 C -0.140 4.140 26 C -0.352 4.352 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.139 0.861 48 H 0.096 0.904 49 H 0.228 0.772 50 H 0.152 0.848 51 H 0.113 0.887 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.678 3.077 0.999 3.306 hybrid contribution 0.284 0.204 0.104 0.365 sum 0.962 3.282 1.103 3.593 Atomic orbital electron populations 1.26094 1.20007 1.04831 1.04827 0.79463 0.67291 0.66768 0.65764 1.26499 1.06092 1.18700 1.05004 1.26260 1.00819 1.07790 1.14901 1.20222 0.93765 1.01134 0.99192 1.20892 1.00846 1.02160 0.94872 1.21668 0.96211 0.95022 0.91474 1.47652 1.11952 1.18916 1.53886 1.20238 0.89028 0.81135 0.78759 1.90723 1.58692 1.52112 1.40212 1.21591 0.94612 0.97600 1.04401 1.22434 0.80983 0.95590 1.01147 1.85969 1.30091 1.33795 1.73121 1.18926 0.93528 0.85017 0.93801 1.21380 1.00329 0.96980 1.03447 1.20875 0.95462 0.95157 0.97534 1.20908 0.94273 1.00049 1.02705 1.19007 0.93936 0.93773 0.97144 1.24767 0.96009 1.09468 0.89054 1.86521 1.36861 1.89787 1.21738 0.85686 0.80536 0.77033 0.79444 1.17097 1.17274 1.18169 1.20202 0.93890 0.96929 1.03016 1.27115 0.85454 1.07336 1.15269 0.90800 0.90945 0.90996 0.90530 0.90924 0.90625 0.90624 0.90310 0.91551 0.91547 0.90674 0.91323 0.87919 0.89886 0.87610 0.87399 0.90980 0.90979 0.84950 0.85182 0.86059 0.90399 0.77228 0.84794 0.88666 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.94 8.65 101.05 0.87 1.81 16 2 Si 1.01 -3.32 10.32 -169.99 -1.75 -5.08 16 3 C -0.46 1.53 7.85 101.05 0.79 2.32 16 4 C -0.41 0.93 4.74 37.86 0.18 1.11 16 5 C -0.11 0.28 5.27 -28.96 -0.15 0.13 16 6 C -0.15 0.43 4.63 -30.18 -0.14 0.29 16 7 C 0.08 -0.22 5.02 -5.37 -0.03 -0.25 16 8 N -0.59 0.17 2.61 -112.85 -0.29 -0.13 16 9 C 0.52 1.01 7.28 -10.99 -0.08 0.93 16 10 O -0.54 -3.12 15.61 5.56 0.09 -3.03 16 11 C -0.14 0.03 4.75 -27.88 -0.13 -0.10 16 12 C 0.07 0.12 4.03 37.16 0.15 0.27 16 13 O -0.32 -0.93 10.14 -19.42 -0.20 -1.13 16 14 C 0.13 0.46 6.69 -39.22 -0.26 0.20 16 15 C -0.20 -0.55 9.04 -39.43 -0.36 -0.90 16 16 C -0.07 -0.15 10.04 -39.61 -0.40 -0.55 16 17 C -0.16 -0.39 8.67 -39.56 -0.34 -0.73 16 18 C -0.04 -0.10 5.38 -104.65 -0.56 -0.67 16 19 C -0.08 -0.04 2.79 36.00 0.10 0.06 16 20 O -0.54 -0.49 12.81 -35.23 -0.45 -0.94 16 21 Si 0.95 -0.06 25.14 -169.99 -4.27 -4.33 16 22 H -0.25 -0.33 7.04 56.52 0.40 0.06 16 23 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 24 H -0.26 0.03 7.11 56.52 0.40 0.44 16 25 C -0.12 -0.40 9.62 -39.43 -0.38 -0.78 16 26 C -0.18 0.13 5.35 60.84 0.33 0.46 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.08 -0.30 4.86 -51.93 -0.25 -0.55 16 31 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 32 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 33 H 0.07 -0.08 7.91 -51.92 -0.41 -0.49 16 34 H 0.08 -0.19 7.95 -51.93 -0.41 -0.60 16 35 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.07 -0.24 6.34 -51.93 -0.33 -0.57 16 37 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 38 H 0.07 -0.12 6.19 -51.93 -0.32 -0.44 16 39 H 0.10 -0.41 3.48 -51.93 -0.18 -0.59 16 40 H 0.08 -0.33 7.14 -51.93 -0.37 -0.70 16 41 H 0.11 -0.18 7.57 -51.93 -0.39 -0.58 16 42 H 0.11 -0.16 6.38 -51.93 -0.33 -0.49 16 43 H 0.07 0.15 7.61 -51.93 -0.39 -0.25 16 44 H 0.07 0.14 7.63 -51.93 -0.40 -0.26 16 45 H 0.13 0.22 6.30 -52.49 -0.33 -0.12 16 46 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 47 H 0.12 0.12 4.86 -52.48 -0.25 -0.14 16 48 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 49 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 50 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 51 H 0.09 0.10 7.21 -51.93 -0.37 -0.28 16 52 H 0.07 -0.08 7.98 -51.93 -0.41 -0.50 16 LS Contribution 395.99 15.07 5.97 5.97 Total: 0.00 -8.10 395.99 -9.07 -17.17 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -7.74 Total: -12.11 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.41 Total: 3.60 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -0.29 Total: -0.13 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.56 Total: -5.09 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: -6.03 Total: -9.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -8.10 -9.07 -17.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.836 kcal (2) G-P(sol) polarization free energy of solvation -8.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds