Wall clock time and date at job start Tue Mar 9 2021 13:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47184 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47133 * 179.97438 * 12 11 9 14 14 O 1.42900 * 109.47210 * 179.97438 * 13 12 11 15 15 C 1.35897 * 116.99819 * 180.02562 * 14 13 12 16 16 C 1.38708 * 120.06001 * 359.72740 * 15 14 13 17 17 C 1.38172 * 119.94456 * 179.72450 * 16 15 14 18 18 C 1.38242 * 120.05539 * 0.57141 * 17 16 15 19 19 C 1.38286 * 120.11093 * 359.68075 * 18 17 16 20 20 C 1.50699 * 119.97094 * 180.02562 * 19 18 17 21 21 O 1.42910 * 109.47184 * 245.02091 * 20 19 18 22 22 Si 1.86295 * 109.47338 * 5.02126 * 20 19 18 23 23 H 1.48497 * 109.46916 * 60.00114 * 22 20 19 24 24 H 1.48498 * 109.47217 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47322 * 300.00120 * 22 20 19 26 26 C 1.38128 * 120.05876 * 0.04590 * 19 18 17 27 27 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 28 28 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 29 29 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 30 30 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 31 31 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 32 32 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 33 33 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 34 34 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 35 35 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 36 36 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 37 37 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 38 38 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 39 39 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 40 40 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 41 41 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 42 42 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 43 43 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 44 44 H 1.08996 * 109.46864 * 299.99496 * 12 11 9 45 45 H 1.08994 * 109.47471 * 59.99991 * 12 11 9 46 46 H 1.09001 * 109.47354 * 299.99848 * 13 12 11 47 47 H 1.08999 * 109.47182 * 59.99500 * 13 12 11 48 48 H 1.07998 * 120.02506 * 359.97438 * 16 15 14 49 49 H 1.07996 * 119.96892 * 180.27342 * 17 16 15 50 50 H 1.08001 * 119.94452 * 179.69995 * 18 17 16 51 51 H 1.09002 * 109.47392 * 125.02906 * 20 19 18 52 52 H 0.96699 * 113.99348 * 60.00280 * 21 20 19 53 53 H 1.07994 * 120.03225 * 180.02562 * 26 19 18 54 54 H 1.09000 * 109.63462 * 202.69778 * 27 8 7 55 55 H 1.08995 * 109.64291 * 82.07444 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 6 6.0292 -4.2557 -2.1624 13 6 7.4783 -4.6722 -1.9026 14 8 7.7218 -5.9473 -2.5000 15 6 8.9703 -6.4657 -2.3604 16 6 9.9425 -5.7592 -1.6677 17 6 11.2094 -6.2910 -1.5223 18 6 11.5118 -7.5208 -2.0766 19 6 10.5459 -8.2248 -2.7720 20 6 10.8788 -9.5654 -3.3744 21 8 10.7967 -9.4813 -4.7987 22 14 12.6065 -10.0566 -2.8800 23 1 12.6919 -10.1440 -1.4001 24 1 12.9344 -11.3779 -3.4732 25 1 13.5703 -9.0396 -3.3722 26 6 9.2762 -7.7001 -2.9154 27 6 2.4839 -0.8729 -1.5417 28 1 -0.3633 0.5214 0.8857 29 1 -0.3633 0.5064 -0.8942 30 1 -0.3634 -1.0276 0.0087 31 1 3.5499 1.7709 0.1759 32 1 2.2592 2.2192 -0.9648 33 1 1.9713 2.3192 0.7889 34 1 2.4568 -1.9390 1.3586 35 1 1.8275 -0.6114 2.3613 36 1 4.1880 -0.7692 2.8354 37 1 3.9678 0.6715 1.8238 38 1 5.8869 -0.7284 1.2192 39 1 4.7652 -2.0367 0.8320 40 1 4.2908 0.5826 -0.5119 41 1 5.7174 -0.3573 -1.0178 42 1 6.4424 -2.1518 -1.9556 43 1 5.9408 -2.9539 -0.4479 44 1 5.3552 -4.9947 -1.7295 45 1 5.8569 -4.1920 -3.2368 46 1 8.1521 -3.9330 -2.3358 47 1 7.6511 -4.7357 -0.8283 48 1 9.7081 -4.7960 -1.2390 49 1 11.9653 -5.7433 -0.9793 50 1 12.5041 -7.9327 -1.9660 51 1 10.1714 -10.3119 -3.0133 52 1 11.4002 -8.8349 -5.1899 53 1 8.5221 -8.2504 -3.4583 54 1 1.8612 -1.7441 -1.7452 55 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:00 Heat of formation + Delta-G solvation = -115.912551 kcal Electronic energy + Delta-G solvation = -30578.857970 eV Core-core repulsion = 26511.675042 eV Total energy + Delta-G solvation = -4067.182928 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.198 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35248 -41.05455 -39.21221 -38.10509 -37.29769 -34.99422 -34.80373 -32.46607 -31.33185 -30.08191 -29.23933 -28.92740 -28.27910 -27.02332 -26.35723 -25.26338 -23.73600 -23.19080 -21.89573 -21.48235 -20.06959 -19.14869 -18.11900 -17.97424 -17.48694 -17.30842 -17.10993 -16.81073 -16.65030 -16.15880 -15.77622 -15.64214 -15.37729 -14.96593 -14.89452 -14.81655 -14.52250 -14.31477 -14.09314 -14.07048 -13.79893 -13.72477 -13.53588 -13.35324 -13.29826 -13.19714 -13.14480 -13.04228 -12.76187 -12.73213 -12.47013 -12.36649 -12.27630 -12.12241 -11.88378 -11.65182 -11.63902 -11.50590 -11.38452 -11.14756 -10.78947 -10.74761 -10.46446 -10.40837 -9.93133 -9.43988 -9.25973 0.20661 0.38692 1.15893 1.47313 1.51325 1.54296 1.68971 1.72382 1.90394 1.93228 2.06782 2.36835 2.58005 2.66835 3.47911 3.54371 3.69045 3.81969 3.83548 3.86931 3.94840 4.06074 4.09151 4.15866 4.18256 4.21073 4.32477 4.36735 4.42528 4.49433 4.50425 4.55845 4.60499 4.64296 4.69905 4.74634 4.76450 4.85539 4.87104 4.92785 4.96078 4.98308 4.99063 5.04013 5.12584 5.15431 5.27145 5.33352 5.36259 5.43225 5.46261 5.48692 5.51395 5.59632 5.72783 5.76632 6.40830 6.43145 6.68000 7.18377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.078 2.922 3 C -0.456 4.456 4 C -0.422 4.422 5 C -0.110 4.110 6 C -0.148 4.148 7 C 0.071 3.929 8 N -0.590 5.590 9 C 0.501 3.499 10 O -0.597 6.597 11 C -0.129 4.129 12 C -0.101 4.101 13 C 0.060 3.940 14 O -0.338 6.338 15 C 0.116 3.884 16 C -0.206 4.206 17 C -0.073 4.073 18 C -0.173 4.173 19 C -0.084 4.084 20 C -0.089 4.089 21 O -0.554 6.554 22 Si 0.995 3.005 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.246 1.246 26 C -0.147 4.147 27 C -0.208 4.208 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.154 0.846 49 H 0.156 0.844 50 H 0.136 0.864 51 H 0.119 0.881 52 H 0.389 0.611 53 H 0.121 0.879 54 H 0.064 0.936 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 8.483 6.143 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.268 2.732 3 C -0.564 4.564 4 C -0.508 4.508 5 C -0.147 4.147 6 C -0.187 4.187 7 C -0.051 4.051 8 N -0.322 5.322 9 C 0.291 3.709 10 O -0.478 6.478 11 C -0.168 4.168 12 C -0.139 4.139 13 C -0.015 4.015 14 O -0.252 6.252 15 C 0.071 3.929 16 C -0.224 4.224 17 C -0.091 4.091 18 C -0.191 4.191 19 C -0.085 4.085 20 C -0.198 4.198 21 O -0.361 6.361 22 Si 0.819 3.181 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.169 1.169 26 C -0.166 4.166 27 C -0.373 4.373 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.171 0.829 49 H 0.174 0.826 50 H 0.154 0.846 51 H 0.137 0.863 52 H 0.238 0.762 53 H 0.139 0.861 54 H 0.083 0.917 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.779 7.296 6.009 10.592 hybrid contribution -0.761 0.073 -0.520 0.925 sum 4.018 7.369 5.489 10.029 Atomic orbital electron populations 1.26336 1.21984 1.04196 1.05021 0.78498 0.65271 0.66432 0.63034 1.26461 1.06977 1.17546 1.05410 1.26400 1.01952 1.06804 1.15626 1.20289 0.93074 1.02194 0.99134 1.20893 1.01862 1.01313 0.94586 1.21963 0.96848 0.94928 0.91359 1.47857 1.12150 1.18856 1.53311 1.21188 0.90661 0.81028 0.77977 1.90695 1.60361 1.53952 1.42819 1.21658 0.92624 0.97586 1.04953 1.21153 0.94525 0.96555 1.01715 1.22967 0.97021 0.82632 0.98833 1.86058 1.28313 1.36915 1.73921 1.19231 0.84320 0.93466 0.95880 1.21585 0.94126 1.02459 1.04235 1.21263 0.96274 0.94701 0.96867 1.21211 0.99519 0.96879 1.01505 1.20219 0.93084 0.97104 0.98068 1.25226 1.14454 0.96215 0.83954 1.86498 1.66935 1.64827 1.17871 0.85037 0.73791 0.79357 0.79963 1.17841 1.20245 1.16949 1.20352 0.97553 0.95016 1.03672 1.27540 0.85807 1.06382 1.17583 0.90290 0.91016 0.92124 0.89228 0.90711 0.90059 0.92431 0.90067 0.91884 0.89893 0.88517 0.92572 0.86697 0.87751 0.85526 0.85774 0.92377 0.92324 0.89725 0.89820 0.82862 0.82602 0.84650 0.86305 0.76188 0.86098 0.91733 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.39 8.65 113.37 0.98 2.37 16 2 Si 1.08 -6.87 10.32 68.60 0.71 -6.17 16 3 C -0.46 4.01 7.85 113.37 0.89 4.90 16 4 C -0.42 2.01 4.74 72.44 0.34 2.35 16 5 C -0.11 0.83 5.27 29.15 0.15 0.98 16 6 C -0.15 1.31 4.63 28.36 0.13 1.44 16 7 C 0.07 -0.58 5.02 86.33 0.43 -0.15 16 8 N -0.59 0.10 2.61 -629.34 -1.64 -1.54 16 9 C 0.50 2.67 7.28 87.66 0.64 3.31 16 10 O -0.60 -9.81 15.61 -3.03 -0.05 -9.85 16 11 C -0.13 0.42 4.38 29.85 0.13 0.55 16 12 C -0.10 -0.25 4.87 30.60 0.15 -0.10 16 13 C 0.06 -0.06 4.74 71.98 0.34 0.28 16 14 O -0.34 -2.36 10.14 -92.39 -0.94 -3.30 16 15 C 0.12 0.65 6.69 22.51 0.15 0.80 16 16 C -0.21 -0.05 9.04 22.37 0.20 0.15 16 17 C -0.07 0.09 10.04 22.25 0.22 0.31 16 18 C -0.17 -0.11 8.67 22.28 0.19 0.08 16 19 C -0.08 -0.28 5.35 -19.88 -0.11 -0.38 16 20 C -0.09 -0.12 2.80 71.24 0.20 0.08 16 21 O -0.55 -1.77 12.83 -148.98 -1.91 -3.68 16 22 Si 1.00 -0.83 25.14 68.60 1.72 0.89 16 23 H -0.25 0.06 7.11 99.48 0.71 0.76 16 24 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 25 H -0.25 0.47 7.04 99.48 0.70 1.17 16 26 C -0.15 -0.99 9.62 22.37 0.22 -0.78 16 27 C -0.21 -0.13 5.35 127.42 0.68 0.55 16 28 H 0.08 -0.32 7.96 -2.38 -0.02 -0.34 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.06 -0.05 7.96 -2.39 -0.02 -0.06 16 31 H 0.09 -1.00 4.86 -2.39 -0.01 -1.01 16 32 H 0.07 -0.62 7.96 -2.39 -0.02 -0.64 16 33 H 0.08 -0.73 7.96 -2.39 -0.02 -0.75 16 34 H 0.06 -0.05 7.91 -2.38 -0.02 -0.07 16 35 H 0.08 -0.43 7.95 -2.39 -0.02 -0.45 16 36 H 0.06 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.08 -0.88 6.34 -2.39 -0.02 -0.90 16 38 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.06 -0.32 6.19 -2.39 -0.01 -0.34 16 40 H 0.12 -1.26 3.48 -2.39 -0.01 -1.26 16 41 H 0.10 -1.30 7.14 -2.39 -0.02 -1.31 16 42 H 0.13 -1.16 7.57 -2.39 -0.02 -1.18 16 43 H 0.12 -1.03 6.38 -2.39 -0.02 -1.04 16 44 H 0.06 0.42 8.10 -2.39 -0.02 0.40 16 45 H 0.06 0.42 8.10 -2.39 -0.02 0.40 16 46 H 0.08 -0.44 7.65 -2.39 -0.02 -0.46 16 47 H 0.08 -0.43 7.67 -2.39 -0.02 -0.44 16 48 H 0.15 -0.83 6.30 -2.91 -0.02 -0.85 16 49 H 0.16 -1.09 8.06 -2.91 -0.02 -1.12 16 50 H 0.14 -0.37 4.86 -2.91 -0.01 -0.38 16 51 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 52 H 0.39 -1.43 8.70 -74.06 -0.64 -2.07 16 53 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 54 H 0.06 0.43 7.21 -2.39 -0.02 0.41 16 55 H 0.07 -0.02 7.98 -2.39 -0.02 -0.04 16 Total: 0.00 -24.26 417.45 4.83 -19.43 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: 0.99 Total: -12.53 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.95 Total: 16.75 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -1.64 Total: -1.54 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -2.90 Total: -16.83 kcal Atomic # 14 Polarization: -7.71 SS G_CDS: 2.43 Total: -5.28 kcal Total: -24.26 4.83 -19.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.485 kcal (2) G-P(sol) polarization free energy of solvation -24.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds