Wall clock time and date at job start Tue Mar 9 2021 13:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35993 * 117.00087 * 2 1 4 4 C 1.38529 * 120.07291 * 0.31772 * 3 2 1 5 5 C 1.38283 * 119.99788 * 180.30108 * 4 3 2 6 6 C 1.50700 * 119.92614 * 179.70270 * 5 4 3 7 7 O 1.42892 * 109.47655 * 104.97173 * 6 5 4 8 8 Si 1.86304 * 109.46933 * 344.97385 * 6 5 4 9 9 H 1.48500 * 109.47173 * 60.00161 * 8 6 5 10 10 H 1.48505 * 109.47120 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47334 * 300.00216 * 8 6 5 12 12 C 1.38209 * 120.15034 * 359.67740 * 5 4 3 13 13 N 1.48006 * 119.92716 * 180.02562 * 12 5 4 14 14 O 1.21797 * 119.99706 * 179.97438 * 13 12 5 15 15 O 1.21804 * 119.99950 * 359.97438 * 13 12 5 16 16 C 1.38282 * 120.14427 * 359.97438 * 12 5 4 17 17 C 1.38519 * 119.99882 * 0.02890 * 16 12 5 18 18 O 1.35998 * 120.07232 * 180.02562 * 17 16 12 19 19 C 1.42898 * 117.00302 * 359.97438 * 18 17 16 20 20 C 1.50693 * 109.47626 * 180.02562 * 19 18 17 21 21 O 1.21280 * 119.99966 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00374 * 179.97438 * 20 19 18 23 23 C 1.44757 * 121.25058 * 0.02562 * 22 20 19 24 24 C 1.51992 * 108.99080 * 283.04005 * 23 22 20 25 25 C 1.46876 * 115.18643 * 266.91199 * 24 23 22 26 26 C 1.54347 * 111.74588 * 66.46669 * 25 24 23 27 27 Si 1.85243 * 110.17009 * 289.11594 * 26 25 24 28 28 C 1.86306 * 109.31230 * 202.02358 * 27 26 25 29 29 C 1.86294 * 109.31535 * 321.44385 * 27 26 25 30 30 C 1.48290 * 121.25531 * 179.97438 * 22 20 19 31 31 H 1.08999 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47368 * 299.99976 * 1 2 3 33 33 H 1.09002 * 109.46735 * 60.00534 * 1 2 3 34 34 H 1.07996 * 119.99926 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47086 * 224.98020 * 6 5 4 36 36 H 0.96703 * 114.00699 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.00292 * 180.02562 * 16 12 5 38 38 H 1.08998 * 109.46680 * 59.99872 * 19 18 17 39 39 H 1.09006 * 109.47055 * 300.00649 * 19 18 17 40 40 H 1.08994 * 109.55639 * 163.18779 * 23 22 20 41 41 H 1.09006 * 109.55354 * 42.88899 * 23 22 20 42 42 H 1.09001 * 108.33923 * 28.39214 * 24 23 22 43 43 H 1.09001 * 108.34091 * 145.61146 * 24 23 22 44 44 H 1.09000 * 109.02422 * 187.05185 * 25 24 23 45 45 H 1.08997 * 109.02590 * 305.88344 * 25 24 23 46 46 H 1.09001 * 109.35140 * 49.33362 * 26 25 24 47 47 H 1.09002 * 109.35416 * 169.04255 * 26 25 24 48 48 H 1.08993 * 109.47095 * 60.00080 * 28 27 26 49 49 H 1.08997 * 109.47188 * 180.02562 * 28 27 26 50 50 H 1.09005 * 109.46824 * 300.00097 * 28 27 26 51 51 H 1.08999 * 109.47316 * 50.76306 * 29 27 26 52 52 H 1.08994 * 109.47780 * 170.76885 * 29 27 26 53 53 H 1.09008 * 109.46863 * 290.77026 * 29 27 26 54 54 H 1.09003 * 109.63623 * 22.71936 * 30 22 20 55 55 H 1.08995 * 109.63907 * 262.09661 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3745 0.0066 5 6 1.9228 3.6057 0.0003 6 6 1.1020 4.8696 0.0008 7 8 1.1406 5.4623 1.3005 8 14 -0.6611 4.4653 -0.4452 9 1 -1.2174 3.5134 0.5496 10 1 -1.4698 5.7108 -0.4453 11 1 -0.7013 3.8494 -1.7958 12 6 3.3029 3.6799 -0.0059 13 7 3.9714 5.0004 -0.0120 14 8 5.1875 5.0672 -0.0170 15 8 3.3053 6.0202 -0.0121 16 6 4.0605 2.5231 -0.0053 17 6 3.4363 1.2865 0.0010 18 8 4.1800 0.1478 0.0021 19 6 5.6007 0.3007 -0.0039 20 6 6.2523 -1.0580 -0.0023 21 8 5.5675 -2.0590 0.0030 22 7 7.5962 -1.1611 -0.0078 23 6 8.4395 0.0154 -0.0147 24 6 8.4581 0.6024 -1.4166 25 6 9.5592 0.1417 -2.2726 26 6 9.4347 -1.3604 -2.6053 27 14 9.7889 -2.3796 -1.0996 28 6 10.2912 -4.0961 -1.6217 29 6 11.1832 -1.5996 -0.1415 30 6 8.2664 -2.4839 -0.0058 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2149 2.3193 0.0114 35 1 1.5104 5.5683 -0.7294 36 1 0.6321 6.2815 1.3746 37 1 5.1388 2.5837 -0.0097 38 1 5.9103 0.8536 0.8829 39 1 5.9035 0.8475 -0.8970 40 1 9.4524 -0.2600 0.2788 41 1 8.0434 0.7524 0.6840 42 1 7.5163 0.3530 -1.9053 43 1 8.5227 1.6873 -1.3334 44 1 9.5507 0.7132 -3.2007 45 1 10.5048 0.3147 -1.7590 46 1 8.4237 -1.5705 -2.9543 47 1 10.1478 -1.6171 -3.3888 48 1 11.1852 -4.0400 -2.2427 49 1 10.4998 -4.6983 -0.7375 50 1 9.4819 -4.5543 -2.1903 51 1 10.9683 -0.5430 0.0176 52 1 11.2858 -2.0986 0.8221 53 1 12.1116 -1.7009 -0.7037 54 1 7.5856 -3.2401 -0.3965 55 1 8.5623 -2.7430 1.0107 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:00 Heat of formation + Delta-G solvation = -121.608670 kcal Electronic energy + Delta-G solvation = -39329.325339 eV Core-core repulsion = 34267.734401 eV Total energy + Delta-G solvation = -5061.590939 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 412.176 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.40302 -42.18544 -41.26781 -39.78579 -39.13230 -38.14965 -37.73909 -37.13169 -34.93877 -32.81476 -32.64343 -30.79595 -29.71911 -29.19593 -28.92196 -28.31369 -27.92887 -26.84329 -25.74543 -25.24590 -23.82781 -23.10647 -21.73093 -20.79126 -20.43316 -19.78429 -19.50710 -18.87917 -18.52620 -18.29718 -18.21852 -17.85294 -17.58841 -17.07425 -16.93474 -16.60098 -16.31582 -15.97299 -15.69606 -15.42547 -15.35027 -15.04512 -14.84887 -14.42198 -14.40479 -14.29631 -14.11176 -13.93708 -13.74913 -13.73155 -13.65960 -13.36634 -13.26713 -13.17221 -12.94567 -12.80111 -12.67980 -12.62497 -12.51960 -12.45992 -12.39639 -12.36070 -12.19277 -12.08419 -11.80667 -11.69285 -11.46084 -11.20114 -10.89333 -10.77206 -10.52769 -10.41320 -10.25234 -9.57414 -9.53505 -1.33738 -0.48547 0.17455 0.29493 0.99951 1.13237 1.33539 1.38537 1.43962 1.67246 1.79423 1.81631 1.84864 1.85247 1.92634 2.30279 2.57069 2.89057 3.07992 3.24500 3.31631 3.41992 3.70213 3.72679 3.79891 3.83404 3.86733 3.97662 4.07646 4.09270 4.13819 4.16330 4.20517 4.31407 4.45158 4.49864 4.57459 4.58832 4.63788 4.69319 4.75855 4.77931 4.83861 4.85801 4.88679 4.94967 5.01049 5.08390 5.27900 5.29867 5.37778 5.42887 5.51729 5.52688 5.59011 5.76276 5.97193 6.22299 6.54927 6.75539 6.97106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.307 6.307 3 C 0.165 3.835 4 C -0.182 4.182 5 C 0.000 4.000 6 C -0.101 4.101 7 O -0.551 6.551 8 Si 0.967 3.033 9 H -0.245 1.245 10 H -0.242 1.242 11 H -0.247 1.247 12 C -0.041 4.041 13 N 0.037 4.963 14 O -0.190 6.190 15 O -0.146 6.146 16 C -0.109 4.109 17 C 0.099 3.901 18 O -0.292 6.292 19 C 0.027 3.973 20 C 0.509 3.491 21 O -0.573 6.573 22 N -0.580 5.580 23 C 0.064 3.936 24 C -0.153 4.153 25 C -0.109 4.109 26 C -0.424 4.424 27 Si 1.083 2.917 28 C -0.468 4.468 29 C -0.458 4.458 30 C -0.206 4.206 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.178 0.822 35 H 0.102 0.898 36 H 0.404 0.596 37 H 0.186 0.814 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.088 0.912 52 H 0.075 0.925 53 H 0.081 0.919 54 H 0.070 0.930 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 1.429 -1.322 2.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.219 6.219 3 C 0.117 3.883 4 C -0.201 4.201 5 C -0.002 4.002 6 C -0.210 4.210 7 O -0.361 6.361 8 Si 0.786 3.214 9 H -0.168 1.168 10 H -0.165 1.165 11 H -0.170 1.170 12 C -0.125 4.125 13 N 0.553 4.447 14 O -0.398 6.398 15 O -0.365 6.365 16 C -0.129 4.129 17 C 0.052 3.948 18 O -0.205 6.205 19 C -0.050 4.050 20 C 0.297 3.703 21 O -0.452 6.452 22 N -0.313 5.313 23 C -0.058 4.058 24 C -0.191 4.191 25 C -0.146 4.146 26 C -0.509 4.509 27 Si 1.272 2.728 28 C -0.575 4.575 29 C -0.566 4.566 30 C -0.370 4.370 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.194 0.806 35 H 0.120 0.880 36 H 0.255 0.745 37 H 0.203 0.797 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.107 0.893 52 H 0.094 0.906 53 H 0.100 0.900 54 H 0.088 0.912 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.100 -0.852 -1.392 1.635 hybrid contribution 0.036 0.765 -0.007 0.766 sum 0.136 -0.088 -1.399 1.408 Atomic orbital electron populations 1.23720 0.75142 1.07029 1.03402 1.86316 1.24419 1.24677 1.86474 1.18651 0.89330 0.86164 0.94164 1.21160 1.01988 0.88978 1.07928 1.19193 0.90669 0.96013 0.94313 1.25174 1.10734 0.93823 0.91240 1.86396 1.77237 1.45063 1.27385 0.85494 0.73241 0.82148 0.80517 1.16842 1.16468 1.17050 1.20498 0.92425 0.82486 1.17094 1.43469 1.00852 1.03031 0.97369 1.94515 0.96196 1.93967 1.55127 1.94479 1.64607 1.24942 1.52451 1.20902 1.03054 0.88054 1.00843 1.17966 0.88590 0.85385 1.02893 1.86302 1.18528 1.26940 1.88719 1.23069 0.78625 0.96529 1.06810 1.20323 0.83067 0.90177 0.76763 1.90737 1.63567 1.39908 1.51005 1.47651 1.03511 1.08436 1.71710 1.22047 0.98075 0.87247 0.98412 1.20946 1.00208 1.02911 0.95046 1.20273 0.99553 0.94754 1.00068 1.26429 1.04597 1.04452 1.15448 0.78440 0.63101 0.66195 0.65036 1.26317 1.05872 1.19164 1.06109 1.26476 1.13418 1.07724 1.08972 1.27665 1.12167 0.85717 1.11444 0.85546 0.90493 0.90202 0.80560 0.88000 0.74475 0.79681 0.85690 0.85820 0.85860 0.87767 0.92739 0.88440 0.91874 0.89669 0.92338 0.89893 0.90271 0.90898 0.92005 0.89328 0.90573 0.90008 0.91163 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -1.52 10.28 -79.63 -0.82 -2.34 16 3 C 0.17 0.70 6.70 22.57 0.15 0.85 16 4 C -0.18 -0.18 7.65 22.35 0.17 0.00 16 5 C 0.00 0.00 5.29 -19.86 -0.11 -0.11 16 6 C -0.10 0.01 1.73 71.24 0.12 0.14 16 7 O -0.55 -0.52 11.77 -129.63 -1.53 -2.04 16 8 Si 0.97 -4.03 25.49 68.60 1.75 -2.28 16 9 H -0.24 1.07 6.73 99.48 0.67 1.74 16 10 H -0.24 1.01 7.11 99.48 0.71 1.72 16 11 H -0.25 0.93 7.11 99.48 0.71 1.63 16 12 C -0.04 -0.21 6.85 36.38 0.25 0.03 16 13 N 0.04 0.33 4.45 -46.46 -0.21 0.12 16 14 O -0.19 -1.82 18.44 18.89 0.35 -1.47 16 15 O -0.15 -1.37 14.62 25.10 0.37 -1.00 16 16 C -0.11 -0.24 8.54 22.35 0.19 -0.05 16 17 C 0.10 0.47 6.70 22.57 0.15 0.62 16 18 O -0.29 -2.30 9.46 -67.12 -0.63 -2.93 16 19 C 0.03 0.02 3.90 71.23 0.28 0.30 16 20 C 0.51 3.42 7.36 87.65 0.65 4.06 16 21 O -0.57 -10.19 16.13 16.01 0.26 -9.93 16 22 N -0.58 0.05 2.61 -629.86 -1.64 -1.59 16 23 C 0.06 -0.49 5.01 86.37 0.43 -0.06 16 24 C -0.15 1.19 4.63 28.36 0.13 1.32 16 25 C -0.11 0.77 5.27 29.15 0.15 0.92 16 26 C -0.42 2.11 4.74 72.44 0.34 2.46 16 27 Si 1.08 -7.62 10.33 68.60 0.71 -6.91 16 28 C -0.47 1.78 8.65 113.37 0.98 2.76 16 29 C -0.46 4.18 7.85 113.37 0.89 5.07 16 30 C -0.21 0.07 5.35 127.42 0.68 0.75 16 31 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.08 -0.52 7.65 -2.39 -0.02 -0.54 16 33 H 0.08 -0.61 7.68 -2.39 -0.02 -0.63 16 34 H 0.18 -0.67 3.12 -2.91 -0.01 -0.68 16 35 H 0.10 -0.05 6.07 -2.39 -0.01 -0.06 16 36 H 0.40 -3.14 8.74 -74.06 -0.65 -3.79 16 37 H 0.19 -0.56 5.85 -2.91 -0.02 -0.57 16 38 H 0.13 -0.69 7.08 -2.39 -0.02 -0.70 16 39 H 0.12 -0.61 5.90 -2.38 -0.01 -0.62 16 40 H 0.12 -1.35 3.50 -2.39 -0.01 -1.36 16 41 H 0.10 -1.20 7.12 -2.38 -0.02 -1.22 16 42 H 0.05 -0.26 6.20 -2.39 -0.01 -0.28 16 43 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.08 -0.87 6.35 -2.39 -0.02 -0.89 16 46 H 0.06 -0.07 7.91 -2.39 -0.02 -0.09 16 47 H 0.08 -0.46 7.95 -2.39 -0.02 -0.48 16 48 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 49 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 50 H 0.06 -0.11 7.96 -2.38 -0.02 -0.12 16 51 H 0.09 -1.00 4.87 -2.39 -0.01 -1.01 16 52 H 0.08 -0.67 7.96 -2.39 -0.02 -0.69 16 53 H 0.08 -0.75 7.96 -2.38 -0.02 -0.77 16 54 H 0.07 0.36 7.21 -2.39 -0.02 0.35 16 55 H 0.08 -0.14 7.98 -2.39 -0.02 -0.16 16 Total: 0.00 -28.71 425.94 6.22 -22.49 By element: Atomic # 1 Polarization: -13.33 SS G_CDS: 1.03 Total: -12.29 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.58 Total: 20.17 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -1.85 Total: -1.47 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.01 Total: -19.71 kcal Atomic # 14 Polarization: -11.65 SS G_CDS: 2.46 Total: -9.19 kcal Total: -28.71 6.22 -22.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.114 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds