Wall clock time and date at job start Tue Mar 9 2021 13:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.15229 * 2 1 4 4 C 1.85246 * 109.31358 * 240.48227 * 2 1 3 5 5 C 1.54348 * 110.17026 * 321.44243 * 4 2 1 6 6 C 1.46883 * 111.74464 * 289.11251 * 5 4 2 7 7 C 1.52003 * 115.18485 * 66.46934 * 6 5 4 8 8 N 1.44753 * 108.98841 * 266.91271 * 7 6 5 9 9 C 1.34776 * 121.25504 * 283.08800 * 8 7 6 10 10 O 1.21276 * 120.00332 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.99773 * 359.97438 * 9 8 7 12 12 N 1.46501 * 109.47072 * 180.02562 * 11 9 8 13 13 C 1.36837 * 125.05729 * 264.69203 * 12 11 9 14 14 C 1.34238 * 109.93332 * 179.81234 * 13 12 11 15 15 C 1.50698 * 126.49727 * 180.13293 * 14 13 12 16 16 O 1.42905 * 109.46746 * 105.36382 * 15 14 13 17 17 Si 1.86305 * 109.47543 * 345.36671 * 15 14 13 18 18 H 1.48498 * 109.47265 * 179.97438 * 17 15 14 19 19 H 1.48506 * 109.46709 * 299.99828 * 17 15 14 20 20 H 1.48495 * 109.47101 * 59.99458 * 17 15 14 21 21 C 1.46487 * 107.00089 * 0.44087 * 14 13 12 22 22 C 1.39592 * 134.03367 * 179.75793 * 21 14 13 23 23 C 1.36661 * 119.76125 * 180.02562 * 22 21 14 24 24 C 1.38795 * 120.53048 * 359.95650 * 23 22 21 25 25 C 1.37788 * 120.66458 * 0.02562 * 24 23 22 26 26 C 1.37682 * 125.06471 * 85.00330 * 12 11 9 27 27 C 1.48291 * 117.49775 * 103.06146 * 8 7 6 28 28 H 1.09002 * 109.47097 * 291.07947 * 1 2 3 29 29 H 1.08994 * 109.47324 * 51.07665 * 1 2 3 30 30 H 1.08999 * 109.46899 * 171.08082 * 1 2 3 31 31 H 1.08994 * 109.47397 * 179.51845 * 3 2 1 32 32 H 1.09001 * 109.47210 * 299.52477 * 3 2 1 33 33 H 1.09002 * 109.47087 * 59.51778 * 3 2 1 34 34 H 1.08998 * 109.35496 * 201.22364 * 4 2 1 35 35 H 1.09006 * 109.34992 * 81.65117 * 4 2 1 36 36 H 1.08993 * 109.02911 * 168.52902 * 5 4 2 37 37 H 1.09004 * 109.02788 * 49.69050 * 5 4 2 38 38 H 1.09000 * 108.34062 * 187.94775 * 6 5 4 39 39 H 1.08997 * 108.33707 * 305.17579 * 6 5 4 40 40 H 1.09002 * 109.55003 * 26.76426 * 7 6 5 41 41 H 1.08994 * 109.54601 * 146.96144 * 7 6 5 42 42 H 1.09005 * 109.47117 * 300.00676 * 11 9 8 43 43 H 1.09000 * 109.46828 * 60.00177 * 11 9 8 44 44 H 1.08001 * 125.03650 * 359.97438 * 13 12 11 45 45 H 1.09001 * 109.47302 * 225.36271 * 15 14 13 46 46 H 0.96702 * 114.00055 * 179.97438 * 16 15 14 47 47 H 1.07999 * 120.12175 * 359.97438 * 22 21 14 48 48 H 1.07994 * 119.73726 * 179.97438 * 23 22 21 49 49 H 1.08003 * 119.66517 * 180.02562 * 24 23 22 50 50 H 1.07997 * 120.10892 * 179.97438 * 25 24 23 51 51 H 1.09000 * 109.63593 * 82.06760 * 27 8 7 52 52 H 1.08993 * 109.64438 * 202.48284 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7599 0.0000 4 6 2.4757 -0.8613 -1.5213 5 6 1.5825 -2.0792 -1.8395 6 6 1.7736 -3.1631 -0.8668 7 6 1.3122 -2.8516 0.5476 8 7 2.4325 -2.3359 1.3056 9 6 3.3929 -3.1547 1.7786 10 8 4.3214 -2.6982 2.4114 11 6 3.3125 -4.6375 1.5220 12 7 4.4652 -5.3023 2.1348 13 6 5.6273 -5.6184 1.4851 14 6 6.4785 -6.2155 2.3341 15 6 7.8637 -6.7140 2.0119 16 8 8.8321 -5.8230 2.5692 17 14 8.0819 -6.7908 0.1633 18 1 9.4470 -7.2814 -0.1541 19 1 7.0755 -7.7167 -0.4157 20 1 7.8969 -5.4351 -0.4137 21 6 5.8028 -6.2973 3.6312 22 6 6.1606 -6.8049 4.8814 23 6 5.2791 -6.7271 5.9228 24 6 4.0306 -6.1465 5.7478 25 6 3.6571 -5.6389 4.5225 26 6 4.5384 -5.7075 3.4486 27 6 2.4840 -0.8729 1.5417 28 1 -0.3633 0.3696 0.9589 29 1 -0.3633 0.6456 -0.7995 30 1 -0.3633 -1.0152 -0.1593 31 1 3.5641 1.7661 0.0086 32 1 2.1150 2.2693 -0.8942 33 1 2.1010 2.2742 0.8856 34 1 3.4998 -1.1970 -1.3586 35 1 2.4542 -0.1681 -2.3622 36 1 1.8268 -2.4485 -2.8355 37 1 0.5380 -1.7678 -1.8238 38 1 1.2305 -4.0400 -1.2193 39 1 2.8347 -3.4097 -0.8322 40 1 0.5185 -2.1052 0.5164 41 1 0.9393 -3.7612 1.0182 42 1 2.3933 -5.0319 1.9553 43 1 3.3157 -4.8210 0.4476 44 1 5.8306 -5.4152 0.4440 45 1 7.9994 -7.7091 2.4355 46 1 9.7483 -6.0826 2.4008 47 1 7.1303 -7.2582 5.0250 48 1 5.5562 -7.1203 6.8897 49 1 3.3450 -6.0920 6.5805 50 1 2.6833 -5.1894 4.3963 51 1 1.8485 -0.6160 2.3892 52 1 3.5106 -0.5711 1.7489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:38 Heat of formation + Delta-G solvation = -26.524029 kcal Electronic energy + Delta-G solvation = -31263.532108 eV Core-core repulsion = 27352.566977 eV Total energy + Delta-G solvation = -3910.965132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42146 -40.92280 -38.26830 -37.85799 -37.44899 -35.02985 -34.07811 -31.46564 -30.29264 -30.09411 -29.52161 -29.22007 -28.54329 -27.03682 -25.77356 -25.02941 -23.50883 -22.43061 -21.87711 -20.43023 -20.26773 -18.46173 -18.24827 -18.15357 -17.62411 -16.94565 -16.73336 -16.26677 -15.89516 -15.82754 -15.74261 -15.20839 -15.04009 -14.73138 -14.62253 -14.59904 -14.44021 -14.27970 -14.22065 -14.04037 -13.97797 -13.63197 -13.54659 -13.48147 -13.42171 -13.20281 -13.02169 -12.69659 -12.60462 -12.36173 -12.32567 -12.10160 -11.96388 -11.88050 -11.74044 -11.52013 -11.32196 -11.02650 -10.86086 -10.65823 -10.32629 -10.09290 -9.54896 -8.93951 -8.44134 0.34926 0.86800 1.23912 1.30619 1.43343 1.48594 1.54061 1.56232 1.62439 1.69303 1.83212 1.96950 2.15593 2.36139 3.14891 3.33246 3.50123 3.50245 3.74301 3.79051 3.80038 3.86689 3.89465 3.93512 4.15473 4.18642 4.25828 4.38184 4.42050 4.45919 4.49604 4.51658 4.54780 4.56934 4.61858 4.61990 4.71399 4.76136 4.77315 4.86311 4.90486 4.97851 5.01019 5.05945 5.09877 5.25583 5.27778 5.32739 5.40561 5.43944 5.71899 5.88048 5.93775 5.97234 6.19134 6.36681 6.44445 6.81094 7.10397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.013 2.987 3 C -0.450 4.450 4 C -0.411 4.411 5 C -0.105 4.105 6 C -0.150 4.150 7 C 0.076 3.924 8 N -0.591 5.591 9 C 0.491 3.509 10 O -0.512 6.512 11 C 0.091 3.909 12 N -0.466 5.466 13 C 0.064 3.936 14 C -0.154 4.154 15 C -0.042 4.042 16 O -0.544 6.544 17 Si 0.939 3.061 18 H -0.253 1.253 19 H -0.249 1.249 20 H -0.250 1.250 21 C -0.084 4.084 22 C -0.064 4.064 23 C -0.146 4.146 24 C -0.097 4.097 25 C -0.127 4.127 26 C 0.110 3.890 27 C -0.183 4.183 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.165 0.835 45 H 0.071 0.929 46 H 0.375 0.625 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.114 0.886 51 H 0.072 0.928 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -0.914 -4.517 6.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.207 2.793 3 C -0.558 4.558 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.188 4.188 7 C -0.047 4.047 8 N -0.326 5.326 9 C 0.276 3.724 10 O -0.386 6.386 11 C -0.035 4.035 12 N -0.149 5.149 13 C -0.060 4.060 14 C -0.162 4.162 15 C -0.153 4.153 16 O -0.349 6.349 17 Si 0.761 3.239 18 H -0.176 1.176 19 H -0.172 1.172 20 H -0.173 1.173 21 C -0.088 4.088 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.116 4.116 25 C -0.148 4.148 26 C 0.005 3.995 27 C -0.351 4.351 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.182 0.818 45 H 0.089 0.911 46 H 0.222 0.778 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.132 0.868 51 H 0.090 0.910 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.020 -0.296 -5.010 7.098 hybrid contribution 0.338 -0.086 0.244 0.425 sum -4.682 -0.382 -4.766 6.692 Atomic orbital electron populations 1.26487 1.19999 1.04666 1.05079 0.79459 0.67308 0.66847 0.65656 1.26092 1.06545 1.18295 1.04862 1.26262 1.04445 1.04136 1.14939 1.20209 1.00191 0.94794 0.99083 1.20925 1.02682 1.00234 0.95006 1.21647 0.89773 1.01823 0.91440 1.47641 1.23778 1.07054 1.54110 1.20925 0.82808 0.88716 0.79912 1.90801 1.32708 1.76547 1.38549 1.21746 0.89873 0.90642 1.01242 1.43199 1.13624 1.50083 1.07979 1.21449 0.85944 1.00469 0.98178 1.19425 0.94667 1.09212 0.92871 1.23951 0.87025 0.94736 1.09611 1.86597 1.17580 1.51126 1.79580 0.85923 0.81587 0.81278 0.75125 1.17622 1.17225 1.17343 1.18912 0.93124 1.03005 0.93799 1.20270 0.99182 0.98098 0.90730 1.20651 0.94355 1.02557 0.98985 1.20806 0.96746 0.98096 0.96000 1.19945 0.98769 1.04624 0.91431 1.18159 0.96552 1.00248 0.84539 1.27140 1.08311 0.84303 1.15305 0.90876 0.90573 0.90569 0.90980 0.90774 0.90908 0.90653 0.90227 0.91488 0.91421 0.90580 0.91613 0.87689 0.90054 0.86573 0.86116 0.81837 0.91057 0.77849 0.85971 0.85947 0.85766 0.86816 0.90992 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.66 7.85 101.05 0.79 2.45 16 2 Si 1.01 -3.42 10.33 -169.99 -1.76 -5.18 16 3 C -0.45 0.89 8.65 101.05 0.87 1.76 16 4 C -0.41 1.08 4.73 37.86 0.18 1.26 16 5 C -0.11 0.36 5.28 -28.95 -0.15 0.20 16 6 C -0.15 0.59 4.63 -30.17 -0.14 0.45 16 7 C 0.08 -0.28 5.00 -5.48 -0.03 -0.30 16 8 N -0.59 0.27 2.61 -113.01 -0.29 -0.03 16 9 C 0.49 1.21 7.35 -10.98 -0.08 1.13 16 10 O -0.51 -3.91 16.05 5.56 0.09 -3.82 16 11 C 0.09 -0.01 5.16 -5.19 -0.03 -0.03 16 12 N -0.47 -1.59 2.27 -115.70 -0.26 -1.85 16 13 C 0.06 0.22 9.89 -16.73 -0.17 0.06 16 14 C -0.15 -0.68 5.61 -102.71 -0.58 -1.26 16 15 C -0.04 -0.08 3.05 36.00 0.11 0.03 16 16 O -0.54 -1.54 12.86 -35.23 -0.45 -1.99 16 17 Si 0.94 0.40 26.07 -169.99 -4.43 -4.03 16 18 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 19 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 20 H -0.25 -0.40 7.04 56.52 0.40 0.00 16 21 C -0.08 -0.47 6.35 -105.14 -0.67 -1.14 16 22 C -0.06 -0.28 10.05 -39.65 -0.40 -0.68 16 23 C -0.15 -0.48 9.97 -39.95 -0.40 -0.88 16 24 C -0.10 -0.30 10.01 -39.54 -0.40 -0.70 16 25 C -0.13 -0.48 10.00 -39.43 -0.39 -0.88 16 26 C 0.11 0.55 6.80 -83.99 -0.57 -0.02 16 27 C -0.18 0.10 5.34 60.83 0.32 0.42 16 28 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 29 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 30 H 0.08 -0.33 4.87 -51.93 -0.25 -0.58 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.10 7.91 -51.93 -0.41 -0.51 16 35 H 0.08 -0.22 7.95 -51.93 -0.41 -0.63 16 36 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 37 H 0.07 -0.29 6.37 -51.93 -0.33 -0.62 16 38 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 39 H 0.07 -0.20 6.18 -51.93 -0.32 -0.52 16 40 H 0.11 -0.49 3.49 -51.93 -0.18 -0.67 16 41 H 0.08 -0.42 7.13 -51.93 -0.37 -0.79 16 42 H 0.12 -0.28 7.56 -51.93 -0.39 -0.68 16 43 H 0.12 -0.37 6.35 -51.93 -0.33 -0.69 16 44 H 0.16 0.13 6.29 -52.49 -0.33 -0.20 16 45 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 46 H 0.37 -0.78 8.74 45.56 0.40 -0.38 16 47 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 48 H 0.12 0.14 8.06 -52.49 -0.42 -0.29 16 49 H 0.12 0.09 8.06 -52.48 -0.42 -0.33 16 50 H 0.11 0.22 8.06 -52.49 -0.42 -0.20 16 51 H 0.07 -0.07 7.98 -51.93 -0.41 -0.48 16 52 H 0.09 0.16 7.21 -51.93 -0.37 -0.22 16 LS Contribution 401.49 15.07 6.05 6.05 Total: 0.00 -10.79 401.49 -10.31 -21.11 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -7.54 Total: -12.11 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.71 Total: 1.86 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.56 Total: -1.88 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.36 Total: -5.81 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: -6.19 Total: -9.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -10.79 -10.31 -21.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.419 kcal (2) G-P(sol) polarization free energy of solvation -10.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds