Wall clock time and date at job start Tue Mar 9 2021 13:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.15229 * 2 1 4 4 C 1.85246 * 109.31358 * 240.48227 * 2 1 3 5 5 C 1.54348 * 110.17026 * 321.44243 * 4 2 1 6 6 C 1.46883 * 111.74464 * 289.11251 * 5 4 2 7 7 C 1.52003 * 115.18485 * 66.46934 * 6 5 4 8 8 N 1.44753 * 108.98841 * 266.91271 * 7 6 5 9 9 C 1.34776 * 121.25504 * 283.08800 * 8 7 6 10 10 O 1.21276 * 120.00332 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.99773 * 359.97438 * 9 8 7 12 12 N 1.46501 * 109.47072 * 180.02562 * 11 9 8 13 13 C 1.36837 * 125.05729 * 264.69203 * 12 11 9 14 14 C 1.34238 * 109.93332 * 179.81234 * 13 12 11 15 15 C 1.50698 * 126.49727 * 180.13293 * 14 13 12 16 16 O 1.42905 * 109.46746 * 105.36382 * 15 14 13 17 17 Si 1.86305 * 109.47543 * 345.36671 * 15 14 13 18 18 H 1.48498 * 109.47265 * 179.97438 * 17 15 14 19 19 H 1.48506 * 109.46709 * 299.99828 * 17 15 14 20 20 H 1.48495 * 109.47101 * 59.99458 * 17 15 14 21 21 C 1.46487 * 107.00089 * 0.44087 * 14 13 12 22 22 C 1.39592 * 134.03367 * 179.75793 * 21 14 13 23 23 C 1.36661 * 119.76125 * 180.02562 * 22 21 14 24 24 C 1.38795 * 120.53048 * 359.95650 * 23 22 21 25 25 C 1.37788 * 120.66458 * 0.02562 * 24 23 22 26 26 C 1.37682 * 125.06471 * 85.00330 * 12 11 9 27 27 C 1.48291 * 117.49775 * 103.06146 * 8 7 6 28 28 H 1.09002 * 109.47097 * 291.07947 * 1 2 3 29 29 H 1.08994 * 109.47324 * 51.07665 * 1 2 3 30 30 H 1.08999 * 109.46899 * 171.08082 * 1 2 3 31 31 H 1.08994 * 109.47397 * 179.51845 * 3 2 1 32 32 H 1.09001 * 109.47210 * 299.52477 * 3 2 1 33 33 H 1.09002 * 109.47087 * 59.51778 * 3 2 1 34 34 H 1.08998 * 109.35496 * 201.22364 * 4 2 1 35 35 H 1.09006 * 109.34992 * 81.65117 * 4 2 1 36 36 H 1.08993 * 109.02911 * 168.52902 * 5 4 2 37 37 H 1.09004 * 109.02788 * 49.69050 * 5 4 2 38 38 H 1.09000 * 108.34062 * 187.94775 * 6 5 4 39 39 H 1.08997 * 108.33707 * 305.17579 * 6 5 4 40 40 H 1.09002 * 109.55003 * 26.76426 * 7 6 5 41 41 H 1.08994 * 109.54601 * 146.96144 * 7 6 5 42 42 H 1.09005 * 109.47117 * 300.00676 * 11 9 8 43 43 H 1.09000 * 109.46828 * 60.00177 * 11 9 8 44 44 H 1.08001 * 125.03650 * 359.97438 * 13 12 11 45 45 H 1.09001 * 109.47302 * 225.36271 * 15 14 13 46 46 H 0.96702 * 114.00055 * 179.97438 * 16 15 14 47 47 H 1.07999 * 120.12175 * 359.97438 * 22 21 14 48 48 H 1.07994 * 119.73726 * 179.97438 * 23 22 21 49 49 H 1.08003 * 119.66517 * 180.02562 * 24 23 22 50 50 H 1.07997 * 120.10892 * 179.97438 * 25 24 23 51 51 H 1.09000 * 109.63593 * 82.06760 * 27 8 7 52 52 H 1.08993 * 109.64438 * 202.48284 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7599 0.0000 4 6 2.4757 -0.8613 -1.5213 5 6 1.5825 -2.0792 -1.8395 6 6 1.7736 -3.1631 -0.8668 7 6 1.3122 -2.8516 0.5476 8 7 2.4325 -2.3359 1.3056 9 6 3.3929 -3.1547 1.7786 10 8 4.3214 -2.6982 2.4114 11 6 3.3125 -4.6375 1.5220 12 7 4.4652 -5.3023 2.1348 13 6 5.6273 -5.6184 1.4851 14 6 6.4785 -6.2155 2.3341 15 6 7.8637 -6.7140 2.0119 16 8 8.8321 -5.8230 2.5692 17 14 8.0819 -6.7908 0.1633 18 1 9.4470 -7.2814 -0.1541 19 1 7.0755 -7.7167 -0.4157 20 1 7.8969 -5.4351 -0.4137 21 6 5.8028 -6.2973 3.6312 22 6 6.1606 -6.8049 4.8814 23 6 5.2791 -6.7271 5.9228 24 6 4.0306 -6.1465 5.7478 25 6 3.6571 -5.6389 4.5225 26 6 4.5384 -5.7075 3.4486 27 6 2.4840 -0.8729 1.5417 28 1 -0.3633 0.3696 0.9589 29 1 -0.3633 0.6456 -0.7995 30 1 -0.3633 -1.0152 -0.1593 31 1 3.5641 1.7661 0.0086 32 1 2.1150 2.2693 -0.8942 33 1 2.1010 2.2742 0.8856 34 1 3.4998 -1.1970 -1.3586 35 1 2.4542 -0.1681 -2.3622 36 1 1.8268 -2.4485 -2.8355 37 1 0.5380 -1.7678 -1.8238 38 1 1.2305 -4.0400 -1.2193 39 1 2.8347 -3.4097 -0.8322 40 1 0.5185 -2.1052 0.5164 41 1 0.9393 -3.7612 1.0182 42 1 2.3933 -5.0319 1.9553 43 1 3.3157 -4.8210 0.4476 44 1 5.8306 -5.4152 0.4440 45 1 7.9994 -7.7091 2.4355 46 1 9.7483 -6.0826 2.4008 47 1 7.1303 -7.2582 5.0250 48 1 5.5562 -7.1203 6.8897 49 1 3.3450 -6.0920 6.5805 50 1 2.6833 -5.1894 4.3963 51 1 1.8485 -0.6160 2.3892 52 1 3.5106 -0.5711 1.7489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:37 Heat of formation + Delta-G solvation = -22.482245 kcal Electronic energy + Delta-G solvation = -31263.356843 eV Core-core repulsion = 27352.566977 eV Total energy + Delta-G solvation = -3910.789867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.59167 -40.99114 -38.26527 -38.01686 -37.60306 -34.92607 -34.23175 -31.62717 -30.34064 -30.13834 -29.37525 -29.16929 -28.34309 -27.05010 -25.69424 -25.02689 -23.71975 -22.60580 -21.68337 -20.58735 -20.30124 -18.51588 -18.35364 -18.24221 -17.76682 -16.91931 -16.74810 -16.45358 -15.96607 -15.81355 -15.67709 -15.18039 -15.04994 -14.83580 -14.77609 -14.59282 -14.56251 -14.29819 -14.13291 -13.86393 -13.76255 -13.64927 -13.44292 -13.37911 -13.22081 -13.20697 -12.81091 -12.73897 -12.57959 -12.53262 -12.49468 -12.14051 -11.99180 -11.71167 -11.69356 -11.48151 -11.23471 -10.96107 -10.80466 -10.55608 -10.43666 -10.19196 -9.54168 -9.18679 -8.65670 0.10885 0.62162 1.17834 1.27087 1.37066 1.46303 1.52661 1.64023 1.66957 1.77258 1.90626 1.91277 2.20648 2.54639 2.91929 3.36930 3.53260 3.62039 3.74349 3.78240 3.80644 3.98173 4.01933 4.08890 4.12912 4.21620 4.26424 4.38709 4.43147 4.48269 4.56363 4.57251 4.68044 4.71479 4.73768 4.76752 4.82021 4.83835 4.87742 4.88854 4.93076 4.99748 5.08920 5.12447 5.29929 5.39476 5.42473 5.48851 5.49353 5.55731 5.64307 5.72082 5.73074 5.74090 6.11083 6.20228 6.32612 6.90099 7.02103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.081 2.919 3 C -0.470 4.470 4 C -0.422 4.422 5 C -0.109 4.109 6 C -0.151 4.151 7 C 0.065 3.935 8 N -0.583 5.583 9 C 0.484 3.516 10 O -0.579 6.579 11 C 0.088 3.912 12 N -0.468 5.468 13 C 0.056 3.944 14 C -0.180 4.180 15 C -0.054 4.054 16 O -0.570 6.570 17 Si 0.984 3.016 18 H -0.248 1.248 19 H -0.248 1.248 20 H -0.270 1.270 21 C -0.117 4.117 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.104 4.104 25 C -0.138 4.138 26 C 0.089 3.911 27 C -0.206 4.206 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.184 0.816 45 H 0.082 0.918 46 H 0.393 0.607 47 H 0.128 0.872 48 H 0.142 0.858 49 H 0.148 0.852 50 H 0.129 0.871 51 H 0.073 0.927 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -1.693 -5.804 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.270 2.730 3 C -0.577 4.577 4 C -0.508 4.508 5 C -0.146 4.146 6 C -0.189 4.189 7 C -0.056 4.056 8 N -0.315 5.315 9 C 0.272 3.728 10 O -0.458 6.458 11 C -0.037 4.037 12 N -0.151 5.151 13 C -0.069 4.069 14 C -0.187 4.187 15 C -0.163 4.163 16 O -0.378 6.378 17 Si 0.805 3.195 18 H -0.171 1.171 19 H -0.171 1.171 20 H -0.195 1.195 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.172 4.172 24 C -0.123 4.123 25 C -0.158 4.158 26 C -0.016 4.016 27 C -0.371 4.371 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.201 0.799 45 H 0.100 0.900 46 H 0.243 0.757 47 H 0.146 0.854 48 H 0.160 0.840 49 H 0.165 0.835 50 H 0.147 0.853 51 H 0.091 0.909 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.280 -1.084 -6.297 9.686 hybrid contribution 1.043 0.242 0.681 1.269 sum -6.237 -0.842 -5.616 8.435 Atomic orbital electron populations 1.26448 1.18609 1.05794 1.05490 0.78468 0.67397 0.64279 0.62840 1.26352 1.05902 1.20347 1.05064 1.26400 1.03810 1.04991 1.15568 1.20276 1.00813 0.94408 0.99109 1.20934 1.02399 1.01021 0.94539 1.22017 0.88823 1.03326 0.91459 1.47767 1.23833 1.06829 1.53055 1.21419 0.82396 0.89934 0.79075 1.90769 1.35427 1.77768 1.41830 1.22089 0.89821 0.88611 1.03130 1.43413 1.14382 1.49720 1.07579 1.21858 0.86035 0.99948 0.99047 1.19865 0.96028 1.10003 0.92803 1.24239 0.85853 0.94792 1.11404 1.86539 1.19117 1.52000 1.80168 0.85284 0.81561 0.79828 0.72782 1.17139 1.17121 1.19481 1.19344 0.94069 1.03914 0.94750 1.20493 0.99874 0.98737 0.91004 1.20954 0.94370 1.02301 0.99530 1.21154 0.97088 0.97525 0.96537 1.20237 0.99395 1.04716 0.91477 1.18466 0.96839 1.00688 0.85599 1.27613 1.06602 0.84966 1.17886 0.90690 0.89958 0.89127 0.92248 0.90213 0.91036 0.92472 0.89957 0.91698 0.89714 0.88161 0.92694 0.86240 0.87620 0.83835 0.83003 0.79910 0.89970 0.75745 0.85432 0.84012 0.83455 0.85285 0.90863 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 4.27 7.85 113.37 0.89 5.16 16 2 Si 1.08 -7.30 10.33 68.60 0.71 -6.60 16 3 C -0.47 1.38 8.65 113.37 0.98 2.36 16 4 C -0.42 2.27 4.73 72.44 0.34 2.61 16 5 C -0.11 0.92 5.28 29.15 0.15 1.07 16 6 C -0.15 1.47 4.63 28.37 0.13 1.60 16 7 C 0.07 -0.59 5.00 86.38 0.43 -0.16 16 8 N -0.58 0.32 2.61 -629.85 -1.64 -1.33 16 9 C 0.48 2.99 7.35 87.66 0.64 3.63 16 10 O -0.58 -10.67 16.05 -3.02 -0.05 -10.71 16 11 C 0.09 -0.03 5.16 85.63 0.44 0.41 16 12 N -0.47 -3.69 2.27 -519.98 -1.18 -4.87 16 13 C 0.06 0.46 9.89 83.00 0.82 1.28 16 14 C -0.18 -1.92 5.61 -18.63 -0.10 -2.03 16 15 C -0.05 -0.27 3.05 71.24 0.22 -0.06 16 16 O -0.57 -4.18 12.86 -148.98 -1.92 -6.09 16 17 Si 0.98 1.02 26.07 68.60 1.79 2.81 16 18 H -0.25 0.00 7.11 99.48 0.71 0.71 16 19 H -0.25 -0.15 7.11 99.48 0.71 0.55 16 20 H -0.27 -1.10 7.04 99.48 0.70 -0.40 16 21 C -0.12 -1.55 6.35 -20.20 -0.13 -1.68 16 22 C -0.08 -0.89 10.05 22.23 0.22 -0.66 16 23 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 24 C -0.10 -0.70 10.01 22.30 0.22 -0.47 16 25 C -0.14 -1.17 10.00 22.37 0.22 -0.95 16 26 C 0.09 1.04 6.80 39.03 0.27 1.30 16 27 C -0.21 -0.10 5.34 127.42 0.68 0.58 16 28 H 0.07 -0.66 7.96 -2.39 -0.02 -0.68 16 29 H 0.08 -0.78 7.96 -2.39 -0.02 -0.80 16 30 H 0.09 -1.09 4.87 -2.39 -0.01 -1.10 16 31 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 32 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.06 -0.08 7.91 -2.39 -0.02 -0.10 16 35 H 0.08 -0.48 7.95 -2.38 -0.02 -0.50 16 36 H 0.06 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.08 -0.98 6.37 -2.39 -0.02 -0.99 16 38 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 39 H 0.05 -0.38 6.18 -2.39 -0.01 -0.40 16 40 H 0.12 -1.42 3.49 -2.39 -0.01 -1.43 16 41 H 0.11 -1.41 7.13 -2.39 -0.02 -1.43 16 42 H 0.14 -0.91 7.56 -2.38 -0.02 -0.93 16 43 H 0.15 -1.10 6.35 -2.39 -0.02 -1.12 16 44 H 0.18 0.46 6.29 -2.91 -0.02 0.45 16 45 H 0.08 0.14 7.96 -2.39 -0.02 0.12 16 46 H 0.39 -1.17 8.74 -74.06 -0.65 -1.82 16 47 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 49 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 50 H 0.13 0.52 8.06 -2.91 -0.02 0.50 16 51 H 0.07 -0.03 7.98 -2.39 -0.02 -0.05 16 52 H 0.06 0.44 7.21 -2.39 -0.02 0.43 16 Total: 0.00 -29.18 401.49 5.40 -23.78 By element: Atomic # 1 Polarization: -11.09 SS G_CDS: 1.03 Total: -10.06 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.66 Total: 13.07 kcal Atomic # 7 Polarization: -3.38 SS G_CDS: -2.82 Total: -6.20 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.96 Total: -16.81 kcal Atomic # 14 Polarization: -6.28 SS G_CDS: 2.50 Total: -3.78 kcal Total: -29.18 5.40 -23.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.296 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds