Wall clock time and date at job start Tue Mar 9 2021 14:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47145 * 2 1 4 4 C 1.50701 * 109.47153 * 119.99897 * 2 1 3 5 5 C 1.38183 * 119.84408 * 15.00291 * 4 2 1 6 6 C 1.38318 * 120.14748 * 180.02562 * 5 4 2 7 7 F 1.35097 * 120.08416 * 179.97438 * 6 5 4 8 8 C 1.39804 * 119.83034 * 359.97438 * 6 5 4 9 9 C 1.47689 * 120.15283 * 180.02562 * 8 6 5 10 10 O 1.21566 * 120.00169 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00127 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00458 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47565 * 179.97438 * 12 11 9 14 14 H 1.08995 * 112.85004 * 316.20263 * 13 12 11 15 15 C 1.53787 * 113.61179 * 87.50108 * 13 12 11 16 16 C 1.53780 * 87.08015 * 139.98195 * 15 13 12 17 17 H 1.09003 * 113.69270 * 220.00786 * 16 15 13 18 18 N 1.46501 * 113.61289 * 89.11926 * 16 15 13 19 19 C 1.34951 * 126.03602 * 347.75851 * 18 16 15 20 20 C 1.35312 * 107.74772 * 180.15058 * 19 18 16 21 21 C 1.39869 * 107.91889 * 359.61173 * 20 19 18 22 22 N 1.30837 * 108.20188 * 0.23962 * 21 20 19 23 23 C 1.53779 * 87.08336 * 334.56857 * 16 15 13 24 24 C 1.39654 * 119.69106 * 0.26821 * 8 6 5 25 25 C 1.38071 * 119.85135 * 359.45372 * 24 8 6 26 26 F 1.35104 * 119.91781 * 180.24825 * 25 24 8 27 27 H 0.96706 * 114.00133 * 299.99857 * 1 2 3 28 28 H 1.09005 * 109.47071 * 239.99687 * 2 1 3 29 29 H 1.48504 * 109.99718 * 178.68145 * 3 2 1 30 30 H 1.48506 * 109.99706 * 299.99682 * 3 2 1 31 31 H 1.08000 * 119.92764 * 359.97438 * 5 4 2 32 32 H 0.97006 * 119.99857 * 359.97438 * 11 9 8 33 33 H 1.09005 * 109.47174 * 59.99548 * 12 11 9 34 34 H 1.09004 * 109.47238 * 299.99783 * 12 11 9 35 35 H 1.09010 * 113.60972 * 25.43550 * 15 13 12 36 36 H 1.08999 * 113.61770 * 254.53463 * 15 13 12 37 37 H 1.08008 * 126.12704 * 0.02562 * 19 18 16 38 38 H 1.08002 * 126.04491 * 179.88067 * 20 19 18 39 39 H 1.08000 * 125.90176 * 180.22054 * 21 20 19 40 40 H 1.08997 * 113.61713 * 139.97505 * 23 16 15 41 41 H 1.08996 * 113.61542 * 270.80307 * 23 16 15 42 42 H 1.08001 * 120.07807 * 179.72740 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.0690 -1.4962 1.9710 6 6 1.5232 -2.1506 3.1018 7 9 0.6790 -2.9181 3.8251 8 6 2.8583 -2.0157 3.4942 9 6 3.3510 -2.7117 4.7000 10 8 2.5951 -3.4035 5.3541 11 7 4.6388 -2.5800 5.0752 12 6 5.1275 -3.2699 6.2716 13 6 6.6115 -2.9555 6.4713 14 1 7.1832 -3.0057 5.5447 15 6 6.8660 -1.6761 7.2857 16 6 8.0132 -2.4356 7.9726 17 1 8.0889 -2.2406 9.0424 18 7 9.2977 -2.3104 7.2793 19 6 9.4849 -1.8160 6.0377 20 6 10.8090 -1.8754 5.7653 21 6 11.4542 -2.4166 6.8821 22 7 10.5492 -2.6778 7.7902 23 6 7.2542 -3.7295 7.6344 24 6 3.7225 -1.2157 2.7435 25 6 3.2567 -0.5730 1.6138 26 9 4.0929 0.1973 0.8838 27 1 -0.3934 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 3.5346 1.7702 0.0321 30 1 1.5614 2.4678 -1.2086 31 1 0.0379 -1.5990 1.6667 32 1 5.2421 -2.0283 4.5530 33 1 4.9975 -4.3452 6.1495 34 1 4.5640 -2.9322 7.1414 35 1 6.0487 -1.4174 7.9591 36 1 7.2006 -0.8330 6.6813 37 1 8.7154 -1.4419 5.3785 38 1 11.2843 -1.5567 4.8494 39 1 12.5159 -2.5895 6.9781 40 1 7.9022 -4.5442 7.3114 41 1 6.5441 -4.0330 8.4037 42 1 4.7539 -1.1036 3.0435 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:00:14 Heat of formation + Delta-G solvation = 1.092893 kcal Electronic energy + Delta-G solvation = -30017.927143 eV Core-core repulsion = 25411.343909 eV Total energy + Delta-G solvation = -4606.583234 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.41501 -50.07370 -42.41244 -41.32993 -40.13683 -39.56208 -37.65335 -35.86271 -33.30141 -32.27201 -31.40916 -31.01135 -29.20874 -27.57765 -26.87649 -24.80670 -24.18281 -23.47181 -22.33300 -21.88063 -21.66470 -20.36517 -19.60140 -19.06452 -18.55446 -17.95575 -17.79628 -17.50035 -17.27610 -16.88206 -16.77118 -16.46038 -16.15463 -16.00865 -15.76138 -15.72459 -15.58906 -15.48446 -15.07774 -14.76265 -14.54096 -14.31772 -14.16684 -13.83376 -13.69388 -13.59989 -13.26063 -13.23311 -12.99825 -12.91142 -12.48294 -12.11532 -11.80691 -11.60979 -11.60175 -11.46569 -11.11034 -10.98569 -10.36946 -10.30962 -10.15482 -9.69456 -9.51160 -4.98635 -0.75703 -0.25571 0.95649 1.15883 1.49749 1.54030 1.66616 1.87075 1.93487 2.00246 2.31485 2.82420 2.86422 3.14055 3.19654 3.21721 3.31737 3.51550 3.53885 3.62927 3.67045 3.84975 3.92816 4.04869 4.16588 4.22093 4.34427 4.37665 4.42071 4.46546 4.64776 4.66139 4.70388 4.72991 4.76695 4.77365 4.81247 4.88025 4.90945 4.98240 5.12365 5.18278 5.30951 5.43465 5.74025 6.18763 6.32309 6.64489 6.77037 7.01285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.084 4.084 5 C -0.117 4.117 6 C 0.138 3.862 7 F -0.128 7.128 8 C -0.158 4.158 9 C 0.557 3.443 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.133 3.867 13 C -0.112 4.112 14 H 0.109 0.891 15 C -0.123 4.123 16 C 0.119 3.881 17 H 0.106 0.894 18 N -0.360 5.360 19 C 0.056 3.944 20 C -0.290 4.290 21 C 0.031 3.969 22 N -0.343 5.343 23 C -0.135 4.135 24 C -0.067 4.067 25 C 0.072 3.928 26 F -0.121 7.121 27 H 0.400 0.600 28 H 0.127 0.873 29 H -0.251 1.251 30 H -0.305 1.305 31 H 0.173 0.827 32 H 0.416 0.584 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.207 0.793 38 H 0.164 0.836 39 H 0.197 0.803 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 5.419 -1.404 5.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.182 4.182 3 Si 0.668 3.332 4 C -0.086 4.086 5 C -0.136 4.136 6 C 0.117 3.883 7 F -0.106 7.106 8 C -0.162 4.162 9 C 0.344 3.656 10 O -0.445 6.445 11 N -0.357 5.357 12 C 0.010 3.990 13 C -0.131 4.131 14 H 0.127 0.873 15 C -0.161 4.161 16 C 0.017 3.983 17 H 0.124 0.876 18 N -0.142 5.142 19 C -0.090 4.090 20 C -0.319 4.319 21 C -0.154 4.154 22 N -0.165 5.165 23 C -0.174 4.174 24 C -0.087 4.087 25 C 0.052 3.948 26 F -0.100 7.100 27 H 0.251 0.749 28 H 0.144 0.856 29 H -0.176 1.176 30 H -0.234 1.234 31 H 0.190 0.810 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.223 0.777 38 H 0.182 0.818 39 H 0.213 0.787 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.573 4.715 -0.610 4.788 hybrid contribution 0.570 -0.479 -1.180 1.395 sum 1.143 4.236 -1.790 4.739 Atomic orbital electron populations 1.86502 1.16332 1.81840 1.50960 1.25196 0.86033 1.10746 0.96223 0.94291 0.79102 0.73749 0.86105 1.20468 0.92194 0.97713 0.98215 1.20875 1.03042 0.96776 0.92869 1.17974 0.87048 0.92031 0.91208 1.91593 1.69925 1.72579 1.76542 1.19796 0.93467 1.04033 0.98891 1.18077 0.82823 0.80713 0.84009 1.90878 1.56892 1.41039 1.55699 1.45711 1.09748 1.50959 1.29326 1.21393 0.93419 0.97033 0.87202 1.22839 0.94163 0.96946 0.99141 0.87252 1.23522 0.96246 0.97047 0.99292 1.22277 0.78819 0.99518 0.97702 0.87583 1.48593 1.05576 1.47785 1.12275 1.23057 0.99119 0.98862 0.87970 1.21891 0.93619 1.13859 1.02546 1.24365 1.00444 0.98419 0.92206 1.77342 0.89729 1.24857 1.24572 1.23377 0.98934 0.96076 0.98999 1.21294 1.01530 0.93695 0.92138 1.17305 0.87915 0.96516 0.93023 1.91606 1.70915 1.71689 1.75743 0.74890 0.85595 1.17593 1.23355 0.80968 0.74517 0.92061 0.90618 0.85949 0.88502 0.77657 0.81833 0.78651 0.91898 0.86556 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.70 11.63 -148.98 -1.73 0.96 16 2 C -0.07 0.37 2.96 71.24 0.21 0.58 16 3 Si 0.76 -3.95 30.81 68.60 2.11 -1.84 16 4 C -0.08 0.42 5.14 -19.78 -0.10 0.31 16 5 C -0.12 0.40 9.20 22.28 0.20 0.61 16 6 C 0.14 0.21 7.28 22.67 0.17 0.37 16 7 F -0.13 -1.06 15.55 44.97 0.70 -0.36 16 8 C -0.16 0.21 5.88 -20.06 -0.12 0.09 16 9 C 0.56 1.06 7.77 86.74 0.67 1.73 16 10 O -0.57 -6.72 15.34 -3.92 -0.06 -6.78 16 11 N -0.70 4.49 5.51 -466.12 -2.57 1.93 16 12 C 0.13 -0.80 5.51 86.38 0.48 -0.33 16 13 C -0.11 1.10 3.34 -10.26 -0.03 1.07 16 14 H 0.11 -1.22 7.00 -2.39 -0.02 -1.23 16 15 C -0.12 1.34 6.88 31.12 0.21 1.56 16 16 C 0.12 -0.51 5.18 45.52 0.24 -0.28 16 17 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 18 N -0.36 -0.37 3.79 -324.98 -1.23 -1.60 16 19 C 0.06 -0.17 9.62 83.54 0.80 0.63 16 20 C -0.29 0.09 10.80 21.99 0.24 0.33 16 21 C 0.03 0.11 12.03 85.24 1.02 1.14 16 22 N -0.34 -2.61 12.58 -57.02 -0.72 -3.32 16 23 C -0.14 0.79 7.44 31.12 0.23 1.02 16 24 C -0.07 0.50 9.51 22.57 0.21 0.72 16 25 C 0.07 -0.38 6.65 22.33 0.15 -0.23 16 26 F -0.12 0.40 12.80 44.97 0.58 0.98 16 27 H 0.40 -5.31 8.42 -74.05 -0.62 -5.94 16 28 H 0.13 -0.53 7.96 -2.38 -0.02 -0.55 16 29 H -0.25 0.31 5.26 99.48 0.52 0.83 16 30 H -0.31 -0.96 7.11 99.48 0.71 -0.25 16 31 H 0.17 -1.00 7.06 -2.91 -0.02 -1.02 16 32 H 0.42 -5.62 6.51 -92.70 -0.60 -6.22 16 33 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.08 -0.37 7.84 -2.39 -0.02 -0.39 16 35 H 0.12 -1.53 7.90 -2.38 -0.02 -1.55 16 36 H 0.10 -1.27 6.96 -2.39 -0.02 -1.29 16 37 H 0.21 -2.42 6.67 -2.91 -0.02 -2.43 16 38 H 0.16 -0.74 8.06 -2.91 -0.02 -0.77 16 39 H 0.20 -0.25 8.06 -2.91 -0.02 -0.28 16 40 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.12 -0.91 8.10 -2.39 -0.02 -0.93 16 42 H 0.18 -2.73 6.41 -2.91 -0.02 -2.75 16 Total: 0.00 -27.49 356.93 1.40 -26.10 By element: Atomic # 1 Polarization: -25.11 SS G_CDS: -0.27 Total: -25.38 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 4.59 Total: 9.32 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -4.52 Total: -3.00 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -1.79 Total: -5.81 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 1.27 Total: 0.62 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.11 Total: -1.84 kcal Total: -27.49 1.40 -26.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds