Wall clock time and date at job start Tue Mar 9 2021 14:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 117.00149 * 2 1 4 4 C 1.38395 * 120.12126 * 359.97438 * 3 2 1 5 5 C 1.38721 * 120.03649 * 180.02562 * 4 3 2 6 6 O 1.35722 * 119.86923 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99402 * 359.97438 * 6 5 4 8 8 C 1.39141 * 120.27039 * 359.97438 * 5 4 3 9 9 C 1.50707 * 119.88012 * 180.02562 * 8 5 4 10 10 O 1.42903 * 109.46442 * 75.00424 * 9 8 5 11 11 Si 1.86293 * 109.47256 * 194.99991 * 9 8 5 12 12 C 1.37580 * 120.24249 * 0.29832 * 8 5 4 13 13 C 1.39825 * 119.96317 * 359.45804 * 12 8 5 14 14 C 1.47290 * 120.13536 * 180.29078 * 13 12 8 15 15 O 1.21623 * 119.99702 * 180.22308 * 14 13 12 16 16 N 1.34774 * 120.00255 * 0.22586 * 14 13 12 17 17 C 1.46510 * 119.99844 * 179.97438 * 16 14 13 18 18 H 1.08992 * 112.84918 * 334.66439 * 17 16 14 19 19 C 1.53780 * 113.61301 * 105.86666 * 17 16 14 20 20 C 1.54042 * 86.98867 * 89.15901 * 19 17 16 21 21 H 1.09003 * 113.61482 * 270.88618 * 20 19 17 22 22 C 1.50697 * 113.70041 * 139.98839 * 20 19 17 23 23 N 1.30501 * 125.65409 * 167.48898 * 22 20 19 24 24 C 1.34127 * 109.25492 * 180.02562 * 23 22 20 25 25 C 1.34675 * 108.02389 * 359.97438 * 24 23 22 26 26 N 1.35046 * 125.64644 * 347.18570 * 22 20 19 27 27 C 1.53779 * 87.08027 * 25.42730 * 20 19 17 28 28 H 1.08997 * 109.47525 * 60.00100 * 1 2 3 29 29 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47364 * 300.00162 * 1 2 3 31 31 H 1.08011 * 119.98243 * 0.04263 * 4 3 2 32 32 H 1.09002 * 109.47184 * 60.00136 * 7 6 5 33 33 H 1.09002 * 109.46532 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46895 * 299.99848 * 7 6 5 35 35 H 1.08999 * 109.47345 * 315.00494 * 9 8 5 36 36 H 0.96700 * 114.00311 * 60.00230 * 10 9 8 37 37 H 1.48506 * 109.99973 * 180.02562 * 11 9 8 38 38 H 1.48493 * 110.00375 * 301.32185 * 11 9 8 39 39 H 1.08007 * 120.02342 * 179.69992 * 12 8 5 40 40 H 0.96995 * 119.99865 * 359.97438 * 16 14 13 41 41 H 1.09004 * 113.60835 * 203.66487 * 19 17 16 42 42 H 1.09001 * 113.61436 * 334.56034 * 19 17 16 43 43 H 1.07999 * 125.98851 * 180.02562 * 24 23 22 44 44 H 1.07997 * 126.59194 * 180.02562 * 25 24 23 45 45 H 0.97008 * 126.39697 * 0.02562 * 26 22 20 46 46 H 1.09000 * 113.62214 * 220.02087 * 27 20 19 47 47 H 1.09008 * 113.61200 * 89.11821 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 -0.0005 5 6 1.9252 3.6060 -0.0011 6 8 1.1851 4.7437 -0.0011 7 6 -0.2359 4.5931 -0.0011 8 6 3.3145 3.6833 -0.0005 9 6 3.9916 5.0297 -0.0005 10 8 3.8935 5.6121 1.3008 11 14 5.7864 4.8223 -0.4544 12 6 4.0724 2.5351 -0.0057 13 6 3.4461 1.2849 0.0000 14 6 4.2538 0.0533 0.0010 15 8 3.7065 -1.0328 0.0019 16 7 5.5994 0.1298 0.0011 17 6 6.4028 -1.0955 0.0026 18 1 5.8756 -1.9466 0.4334 19 6 7.0628 -1.4010 -1.3523 20 6 8.2560 -0.5545 -0.8701 21 1 8.1650 0.5049 -1.1098 22 6 9.5974 -1.1271 -1.2492 23 7 10.7409 -0.5034 -1.1689 24 6 11.7196 -1.3180 -1.5902 25 6 11.1616 -2.4913 -1.9446 26 7 9.8160 -2.3727 -1.7230 27 6 7.8213 -0.9011 0.5637 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2149 2.3164 -0.0003 32 1 -0.5431 4.0438 0.8889 33 1 -0.7055 5.5768 -0.0015 34 1 -0.5431 4.0438 -0.8911 35 1 3.5058 5.6807 -0.7275 36 1 4.3055 5.0855 1.9994 37 1 6.4655 6.1430 -0.4573 38 1 6.4524 3.9114 0.5109 39 1 5.1505 2.5992 -0.0101 40 1 6.0359 0.9959 0.0001 41 1 7.3035 -2.4548 -1.4929 42 1 6.5346 -0.9694 -2.2025 43 1 12.7711 -1.0758 -1.6363 44 1 11.6771 -3.3603 -2.3258 45 1 9.1445 -3.0549 -1.8800 46 1 7.9052 -0.0662 1.2594 47 1 8.2691 -1.8185 0.9460 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:05:38 Heat of formation + Delta-G solvation = -12.577716 kcal Electronic energy + Delta-G solvation = -32436.333457 eV Core-core repulsion = 27975.163370 eV Total energy + Delta-G solvation = -4461.170088 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.06002 -42.10737 -40.94480 -40.06387 -39.05829 -38.47363 -37.05956 -34.50830 -33.40274 -32.25582 -31.77466 -30.41772 -28.97246 -28.18092 -26.78089 -26.36750 -26.05885 -24.57531 -22.99292 -22.43466 -21.73181 -21.65879 -20.48579 -19.99172 -19.13414 -18.70616 -18.09317 -17.96677 -17.21263 -17.15225 -16.61306 -16.51158 -16.33697 -16.18438 -15.85514 -15.80152 -15.74705 -15.51242 -15.39185 -15.22481 -14.79439 -14.52464 -14.37668 -14.20737 -13.96039 -13.67537 -13.47578 -13.34131 -13.18068 -12.68036 -12.52702 -12.51521 -12.45815 -12.19858 -11.85068 -11.79182 -11.66232 -11.46262 -11.00684 -10.97779 -10.93382 -10.54093 -10.13906 -9.91116 -9.31206 -9.18723 -4.90719 -0.25236 0.09044 1.13102 1.31807 1.55605 1.72739 1.98725 2.03829 2.13462 2.15630 2.18693 2.26728 2.60404 3.31670 3.41483 3.44349 3.48400 3.57885 3.66384 3.75755 3.79932 3.83735 4.10216 4.13808 4.19389 4.24871 4.27976 4.28659 4.29279 4.31181 4.53910 4.56292 4.61360 4.64571 4.65688 4.68413 4.68981 4.76649 4.82543 4.91625 4.96212 4.99825 5.03936 5.08841 5.18871 5.31094 5.55763 5.82558 6.04662 6.29799 6.51067 6.52216 6.57139 7.16936 7.23464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.311 4.311 5 C 0.216 3.784 6 O -0.312 6.312 7 C 0.012 3.988 8 C -0.197 4.197 9 C -0.068 4.068 10 O -0.546 6.546 11 Si 0.755 3.245 12 C 0.000 4.000 13 C -0.226 4.226 14 C 0.569 3.431 15 O -0.559 6.559 16 N -0.704 5.704 17 C 0.125 3.875 18 H 0.095 0.905 19 C -0.139 4.139 20 C -0.025 4.025 21 H 0.125 0.875 22 C 0.211 3.789 23 N -0.530 5.530 24 C -0.063 4.063 25 C -0.045 4.045 26 N -0.558 5.558 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.384 0.616 37 H -0.302 1.302 38 H -0.253 1.253 39 H 0.161 0.839 40 H 0.410 0.590 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.176 0.824 44 H 0.208 0.792 45 H 0.431 0.569 46 H 0.088 0.912 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -1.750 -2.567 4.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.170 3.830 4 C -0.330 4.330 5 C 0.167 3.833 6 O -0.224 6.224 7 C -0.082 4.082 8 C -0.199 4.199 9 C -0.177 4.177 10 O -0.354 6.354 11 Si 0.658 3.342 12 C -0.018 4.018 13 C -0.230 4.230 14 C 0.358 3.642 15 O -0.438 6.438 16 N -0.356 5.356 17 C 0.019 3.981 18 H 0.113 0.887 19 C -0.178 4.178 20 C -0.045 4.045 21 H 0.143 0.857 22 C -0.053 4.053 23 N -0.251 5.251 24 C -0.210 4.210 25 C -0.180 4.180 26 N -0.162 5.162 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.180 0.820 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.233 0.767 37 H -0.230 1.230 38 H -0.178 1.178 39 H 0.178 0.822 40 H 0.248 0.752 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.272 0.728 46 H 0.107 0.893 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.483 -1.157 -2.364 3.619 hybrid contribution -0.838 -0.685 0.827 1.362 sum -3.321 -1.843 -1.537 4.097 Atomic orbital electron populations 1.23468 0.76551 1.05759 1.02624 1.86359 1.23157 1.25839 1.86002 1.18963 0.91071 0.84687 0.88287 1.21415 1.02010 0.90754 1.18823 1.18925 0.90902 0.84907 0.88517 1.86151 1.21052 1.28731 1.86463 1.23465 0.76294 1.05817 1.02624 1.19476 0.90824 0.96492 1.13076 1.25043 1.12220 0.92546 0.87849 1.86616 1.80685 1.50836 1.17237 0.94379 0.71384 0.79569 0.88867 1.20996 1.00201 0.89003 0.91593 1.19095 0.90751 0.93718 1.19438 1.17986 0.82287 0.88364 0.75544 1.90822 1.72223 1.30129 1.50664 1.45472 1.05023 1.09739 1.75408 1.21728 0.91056 0.88162 0.97167 0.88651 1.23539 0.95021 1.00925 0.98363 1.21208 0.84972 1.01052 0.97232 0.85708 1.23258 0.96435 0.83454 1.02157 1.70177 0.99010 1.33653 1.22225 1.22731 0.99907 0.92036 1.06339 1.23267 0.83410 1.02674 1.08616 1.43280 1.09105 1.14099 1.49747 1.23349 0.93322 1.03915 0.95749 0.90913 0.86869 0.91238 0.81986 0.91508 0.86380 0.90931 0.86836 0.76711 1.23000 1.17849 0.82203 0.75239 0.88167 0.89702 0.80641 0.77572 0.72799 0.89330 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.11 8.56 -68.75 -0.59 -2.70 16 3 C 0.22 1.07 6.69 22.82 0.15 1.22 16 4 C -0.31 -0.26 8.01 22.42 0.18 -0.08 16 5 C 0.22 0.41 6.67 22.60 0.15 0.56 16 6 O -0.31 -0.59 9.80 -90.45 -0.89 -1.48 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 -0.07 5.27 -19.80 -0.10 -0.17 16 9 C -0.07 0.00 2.37 71.24 0.17 0.17 16 10 O -0.55 -1.75 12.88 -148.98 -1.92 -3.67 16 11 Si 0.75 -2.62 30.23 68.60 2.07 -0.55 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -0.85 5.89 -20.00 -0.12 -0.97 16 14 C 0.57 3.40 7.76 86.62 0.67 4.07 16 15 O -0.56 -7.86 14.77 16.86 0.25 -7.61 16 16 N -0.70 0.78 5.21 -443.41 -2.31 -1.53 16 17 C 0.12 -0.26 4.30 45.52 0.20 -0.06 16 18 H 0.10 0.15 7.50 -2.39 -0.02 0.13 16 19 C -0.14 0.65 7.38 31.21 0.23 0.88 16 20 C -0.02 0.07 4.18 -10.93 -0.05 0.03 16 21 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 22 C 0.21 0.47 7.37 138.13 1.02 1.49 16 23 N -0.53 -4.47 11.25 -188.13 -2.12 -6.59 16 24 C -0.06 -0.30 11.87 83.52 0.99 0.69 16 25 C -0.05 0.04 12.04 83.09 1.00 1.04 16 26 N -0.56 1.19 5.94 -186.27 -1.11 0.08 16 27 C -0.12 0.49 7.37 31.12 0.23 0.72 16 28 H 0.07 -0.41 7.66 -2.39 -0.02 -0.42 16 29 H 0.11 -0.47 8.14 -2.39 -0.02 -0.48 16 30 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 31 H 0.16 -0.65 4.50 -2.90 -0.01 -0.66 16 32 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 33 H 0.12 -0.94 8.14 -2.39 -0.02 -0.95 16 34 H 0.07 -0.58 7.65 -2.39 -0.02 -0.60 16 35 H 0.11 0.06 7.82 -2.39 -0.02 0.04 16 36 H 0.38 -1.22 8.70 -74.06 -0.64 -1.87 16 37 H -0.30 -1.54 7.11 99.48 0.71 -0.83 16 38 H -0.25 0.97 6.69 99.48 0.67 1.64 16 39 H 0.16 -1.07 3.16 -2.91 -0.01 -1.07 16 40 H 0.41 -2.54 6.72 -92.71 -0.62 -3.16 16 41 H 0.10 -0.75 6.66 -2.38 -0.02 -0.77 16 42 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.21 -1.64 8.06 -2.91 -0.02 -1.67 16 45 H 0.43 -3.48 7.54 -92.70 -0.70 -4.17 16 46 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.10 -0.39 8.09 -2.38 -0.02 -0.41 16 Total: 0.00 -28.89 385.45 -0.39 -29.28 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: -0.91 Total: -17.15 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.13 Total: 11.91 kcal Atomic # 7 Polarization: -2.50 SS G_CDS: -5.54 Total: -8.03 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -3.14 Total: -15.46 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.07 Total: -0.55 kcal Total: -28.89 -0.39 -29.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.702 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds