Wall clock time and date at job start Tue Mar 9 2021 14:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86296 * 109.47157 * 2 1 4 4 C 1.50704 * 109.47275 * 120.00076 * 2 1 3 5 5 C 1.38193 * 119.83853 * 14.99913 * 4 2 1 6 6 C 1.38307 * 120.14347 * 180.02562 * 5 4 2 7 7 F 1.35104 * 120.08452 * 179.97438 * 6 5 4 8 8 C 1.39806 * 119.83143 * 0.25499 * 6 5 4 9 9 C 1.47699 * 120.15430 * 179.72415 * 8 6 5 10 10 O 1.21567 * 120.00099 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00245 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00324 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.84543 * 23.80367 * 12 11 9 14 14 C 1.53779 * 113.61469 * 155.00312 * 12 11 9 15 15 C 1.53782 * 87.08109 * 89.11312 * 14 12 11 16 16 H 1.08997 * 113.61591 * 270.79495 * 15 14 12 17 17 C 1.50703 * 113.61064 * 139.97888 * 15 14 12 18 18 N 1.30500 * 125.64728 * 95.02756 * 17 15 14 19 19 C 1.34126 * 109.25358 * 180.02562 * 18 17 15 20 20 C 1.34662 * 108.02607 * 359.97438 * 19 18 17 21 21 N 1.35043 * 125.65188 * 274.71628 * 17 15 14 22 22 C 1.53774 * 87.08193 * 25.43267 * 15 14 12 23 23 C 1.39661 * 119.68988 * 359.40230 * 8 6 5 24 24 C 1.38063 * 119.84669 * 0.64385 * 23 8 6 25 25 F 1.35104 * 119.91347 * 179.67675 * 24 23 8 26 26 H 0.96697 * 114.00243 * 299.99366 * 1 2 3 27 27 H 1.09003 * 109.47236 * 239.99760 * 2 1 3 28 28 H 1.48504 * 110.00229 * 178.67643 * 3 2 1 29 29 H 1.48498 * 110.00216 * 300.00101 * 3 2 1 30 30 H 1.07998 * 119.92785 * 0.02562 * 5 4 2 31 31 H 0.97006 * 119.99673 * 0.02562 * 11 9 8 32 32 H 1.08997 * 113.61035 * 203.66367 * 14 12 11 33 33 H 1.09001 * 113.61334 * 334.56971 * 14 12 11 34 34 H 1.08003 * 125.98841 * 179.97438 * 19 18 17 35 35 H 1.08005 * 126.59923 * 180.02562 * 20 19 18 36 36 H 0.97000 * 126.39185 * 0.02562 * 21 17 15 37 37 H 1.09000 * 113.61646 * 220.01721 * 22 15 14 38 38 H 1.09000 * 113.61714 * 89.11374 * 22 15 14 39 39 H 1.07999 * 120.06984 * 180.31288 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.0689 -1.4962 1.9710 6 6 1.5231 -2.1506 3.1017 7 9 0.6788 -2.9182 3.8251 8 6 2.8567 -2.0112 3.4974 9 6 3.3478 -2.7019 4.7070 10 8 2.5920 -3.3940 5.3608 11 7 4.6342 -2.5657 5.0854 12 6 5.1215 -3.2513 6.2849 13 1 4.5261 -4.1270 6.5431 14 6 6.6358 -3.5186 6.2693 15 6 6.8068 -2.1377 6.9242 16 1 6.9065 -1.3234 6.2065 17 6 7.8648 -2.1052 7.9969 18 7 9.1078 -1.7451 7.8284 19 6 9.7582 -1.8405 8.9975 20 6 8.8851 -2.2757 9.9258 21 7 7.6823 -2.4382 9.2928 22 6 5.3798 -2.3078 7.4715 23 6 3.7241 -1.2211 2.7398 24 6 3.2566 -0.5729 1.6139 25 9 4.0929 0.1970 0.8837 26 1 -0.3933 0.4416 0.7651 27 1 1.7923 -0.5139 -0.8900 28 1 3.5346 1.7703 0.0322 29 1 1.5614 2.4679 -1.2084 30 1 0.0380 -1.5996 1.6662 31 1 5.2374 -2.0137 4.5634 32 1 6.9396 -4.3463 6.9101 33 1 7.0578 -3.5813 5.2663 34 1 10.7997 -1.6089 9.1651 35 1 9.0926 -2.4572 10.9701 36 1 6.8543 -2.7392 9.6985 37 1 4.7878 -1.3932 7.4390 38 1 5.3402 -2.8046 8.4409 39 1 4.7567 -1.1131 3.0370 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_12360598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:06:19 Heat of formation + Delta-G solvation = -22.074431 kcal Electronic energy + Delta-G solvation = -28094.648767 eV Core-core repulsion = 23642.598541 eV Total energy + Delta-G solvation = -4452.050225 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.42245 -50.07387 -43.09803 -41.54649 -40.27814 -39.20309 -37.64277 -34.82610 -33.44755 -32.88936 -31.41585 -30.56273 -28.06135 -26.82978 -26.21184 -24.19272 -23.95528 -22.59609 -22.02662 -21.77789 -20.56934 -19.65834 -19.10034 -18.89418 -18.50298 -17.79874 -17.53369 -17.26331 -16.86715 -16.71751 -16.24733 -16.05098 -15.94154 -15.79586 -15.71982 -15.51257 -15.44268 -15.05154 -14.62986 -14.55626 -14.36952 -14.17036 -13.69711 -13.63987 -13.45300 -13.23604 -12.94791 -12.52454 -12.48851 -11.90176 -11.58635 -11.51961 -11.17706 -11.03862 -11.00874 -10.99133 -10.31577 -10.17139 -9.70755 -9.34551 -4.99421 -0.76977 -0.26117 1.09907 1.15028 1.47412 1.66229 1.79593 1.99446 2.12482 2.22225 2.29615 2.81737 2.85471 3.14394 3.20732 3.28238 3.36520 3.49798 3.54176 3.60990 3.77419 3.83069 4.07462 4.21907 4.24978 4.34322 4.41478 4.52217 4.54146 4.60926 4.63302 4.66001 4.75771 4.78297 4.81715 4.87539 4.95185 5.01383 5.14566 5.41270 5.44331 5.79482 6.29128 6.49238 6.64661 6.97935 7.13663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.071 4.071 3 Si 0.763 3.237 4 C -0.083 4.083 5 C -0.116 4.116 6 C 0.141 3.859 7 F -0.127 7.127 8 C -0.158 4.158 9 C 0.563 3.437 10 O -0.559 6.559 11 N -0.692 5.692 12 C 0.122 3.878 13 H 0.098 0.902 14 C -0.122 4.122 15 C -0.024 4.024 16 H 0.125 0.875 17 C 0.210 3.790 18 N -0.531 5.531 19 C -0.063 4.063 20 C -0.045 4.045 21 N -0.558 5.558 22 C -0.140 4.140 23 C -0.069 4.069 24 C 0.071 3.929 25 F -0.122 7.122 26 H 0.400 0.600 27 H 0.128 0.872 28 H -0.254 1.254 29 H -0.304 1.304 30 H 0.175 0.825 31 H 0.416 0.584 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.176 0.824 35 H 0.208 0.792 36 H 0.431 0.569 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 2.316 2.743 3.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.180 4.180 3 Si 0.666 3.334 4 C -0.085 4.085 5 C -0.135 4.135 6 C 0.120 3.880 7 F -0.105 7.105 8 C -0.162 4.162 9 C 0.351 3.649 10 O -0.438 6.438 11 N -0.344 5.344 12 C 0.017 3.983 13 H 0.117 0.883 14 C -0.161 4.161 15 C -0.044 4.044 16 H 0.142 0.858 17 C -0.055 4.055 18 N -0.251 5.251 19 C -0.210 4.210 20 C -0.179 4.179 21 N -0.163 5.163 22 C -0.179 4.179 23 C -0.088 4.088 24 C 0.051 3.949 25 F -0.101 7.101 26 H 0.251 0.749 27 H 0.145 0.855 28 H -0.179 1.179 29 H -0.232 1.232 30 H 0.192 0.808 31 H 0.255 0.745 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.194 0.806 35 H 0.224 0.776 36 H 0.272 0.728 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.704 2.365 1.542 2.910 hybrid contribution -0.172 -0.844 0.577 1.037 sum 0.532 1.521 2.119 2.662 Atomic orbital electron populations 1.86501 1.16244 1.81830 1.50967 1.25164 0.86065 1.10592 0.96224 0.94296 0.79062 0.73890 0.86102 1.20467 0.92110 0.97695 0.98208 1.20881 1.03042 0.96668 0.92874 1.17933 0.86944 0.91937 0.91140 1.91599 1.69860 1.72506 1.76509 1.19759 0.93512 1.04248 0.98665 1.18038 0.82599 0.80402 0.83859 1.90871 1.56511 1.40634 1.55773 1.45424 1.10049 1.50737 1.28190 1.21796 0.95571 0.96060 0.84906 0.88346 1.23345 0.93416 0.96449 1.02922 1.21160 0.89235 1.00224 0.93737 0.85752 1.23286 0.94144 1.02485 0.85539 1.70175 1.04811 1.21887 1.28231 1.22735 1.01500 1.07607 0.89199 1.23276 0.85192 1.08269 1.01196 1.43283 1.12417 1.51423 1.09155 1.23499 0.94434 1.01136 0.98835 1.21298 1.01464 0.93821 0.92235 1.17318 0.87974 0.96477 0.93092 1.91606 1.70981 1.71727 1.75752 0.74873 0.85518 1.17902 1.23227 0.80793 0.74485 0.88261 0.88957 0.80634 0.77559 0.72781 0.89723 0.88085 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.52 11.63 -148.98 -1.73 0.79 16 2 C -0.07 0.32 2.96 71.24 0.21 0.53 16 3 Si 0.76 -3.22 30.81 68.60 2.11 -1.11 16 4 C -0.08 0.35 5.14 -19.78 -0.10 0.25 16 5 C -0.12 0.37 9.20 22.28 0.20 0.57 16 6 C 0.14 0.23 7.28 22.67 0.17 0.40 16 7 F -0.13 -1.01 15.55 44.97 0.70 -0.31 16 8 C -0.16 0.11 5.88 -20.05 -0.12 -0.01 16 9 C 0.56 1.31 7.77 86.74 0.67 1.98 16 10 O -0.56 -6.34 14.94 -3.93 -0.06 -6.40 16 11 N -0.69 3.29 5.21 -443.04 -2.31 0.98 16 12 C 0.12 -0.56 4.33 45.52 0.20 -0.37 16 13 H 0.10 -0.08 7.46 -2.39 -0.02 -0.10 16 14 C -0.12 0.75 7.38 31.12 0.23 0.97 16 15 C -0.02 0.11 4.17 -11.01 -0.05 0.07 16 16 H 0.12 -0.75 8.14 -2.39 -0.02 -0.76 16 17 C 0.21 0.23 7.36 138.13 1.02 1.25 16 18 N -0.53 -4.02 11.25 -188.13 -2.12 -6.14 16 19 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 20 C -0.04 0.07 12.04 83.08 1.00 1.07 16 21 N -0.56 1.69 5.94 -186.26 -1.11 0.58 16 22 C -0.14 0.93 7.35 31.12 0.23 1.15 16 23 C -0.07 0.41 9.52 22.57 0.21 0.62 16 24 C 0.07 -0.28 6.65 22.33 0.15 -0.13 16 25 F -0.12 0.20 12.80 44.97 0.58 0.77 16 26 H 0.40 -5.21 8.42 -74.06 -0.62 -5.83 16 27 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 28 H -0.25 -0.06 5.27 99.48 0.52 0.46 16 29 H -0.30 -1.17 7.11 99.48 0.71 -0.47 16 30 H 0.17 -1.01 7.06 -2.91 -0.02 -1.03 16 31 H 0.42 -4.44 6.73 -92.70 -0.62 -5.06 16 32 H 0.10 -0.56 8.09 -2.39 -0.02 -0.58 16 33 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.21 -1.77 8.06 -2.91 -0.02 -1.79 16 36 H 0.43 -3.89 7.53 -92.71 -0.70 -4.59 16 37 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.10 -0.92 6.64 -2.39 -0.02 -0.93 16 39 H 0.18 -2.23 6.41 -2.91 -0.02 -2.25 16 Total: 0.00 -26.32 336.23 0.15 -26.18 By element: Atomic # 1 Polarization: -23.51 SS G_CDS: -0.93 Total: -24.44 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.02 Total: 9.09 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -5.53 Total: -4.57 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -1.79 Total: -5.61 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 1.27 Total: 0.46 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.11 Total: -1.11 kcal Total: -26.32 0.15 -26.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_12360598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.101 kcal (2) G-P(sol) polarization free energy of solvation -26.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds